morexGenes - Barley RNA-seq Database

Contig contig_9808

Source Contig contig_9808

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_9808 (2838 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_9808

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_81761	1	1377 bp	MLOC_81761.1	Available	Available	None

CDS Structure of MLOC_81761

Contig Sequence (2838 bp)

>contig_9808 2838 assembly3_WGSMorex_rbca.fasta
TTGTTTGAGAAGTAGCAGTCATCACTAAATATGATAGTGCCGGCGTGCAACTCTGGCCAA
CACCATAGGTGTTCGAAATACTACTGGCGTCGTCCCCAAAGCCACCACTAAATTCTAAAA
GTGGTGCCATATTGATGGCGTCGGATGTCCACGCGAGCAAGGCCATTCTCACCACGCCAT
ATCTAGGCTTTTCTGCACTAGTGATAATTTAATTGTTTCGGAGGGCCGGAGGGTCATCGA
GTAGGATTTGAATTTGCAAGGGCGATGGTTATTACTGAGTAGTGATTCCCCCTTCCCCCA
TGCGTTATATGTGTCGACTCTCGCAAACATTTACTCATGTGTATCATGTTTTTGTTTTTA
CCCCTCACTCTCTCTATGTCCCCTACTACCATTAATTCCGTCGAAGCATTCTTGCCCTTC
CAACCGCTGCCGCCTCTCCATAAAAAGCCTAGGGTTCCTTTGCCTCCCGCCGATACAGTC
ATTGGTCCGCCTCGCCTCCGGTGGCCCCTAGGGCCATGGAGGCATAGTGAATCGTGATCC
TTCCCAGAGGGAGGTCTCTGTTTTTAGATGTTTCTTGAATTCTGTTACAGTTTGTTCCCT
CCTCATGAAGACGAGATGGCGACAGATCCCTAAAGATAGAACATGGTTCTTCCAAACTAG
TCCATGTCCCTGTGGTGCATCTAGCATCATCACCGGGTGTGTGGAAGTGTGTCTCTGGCG
GACCTCACGTGATTCGATCGATGGTTGTCTTTGATGGATCTACATGGATCTGATGTTTGT
TCGTCTAATTTTGTGCGTCTTCAGGTCGGATCCTTTCAATATACTCATCTCTTCATCTGT
GGTGGTTGTTGTTCTGTTGCACTAGTCCTACGAGACCTTAACATGATGACTTTTGATTGT
CTACTACAACAAGTTTTGCCTGGCTCCAGCGAAAGAGTGGCGATGACGACGGCGCGCCTT
TGGCTCGCTTCAATACTTGTAATAGTTGCTAGATGGCCTATGAATTTGAATATATTTTTT
ATTATTTCCGGTGTTCATTGTATTGTAATGATTAACGATGAATAGATCAAAAGTTTTCTC
GTAAAAAAAACTCTACTGAAGCAGCAACATGTGAGCTATCAGTTTTGCAGAATACAAGGT
AACATCAATTTTACAACAAAATTAATTAGCAATAAAAAGGTGCATGTACTCATTTCCCCA
ATATATATATATATATATATTGGTAATTGAGTTTTATCTCCTTGTCCTAATAAACCCGAG
CTAAGGGAGTAAAGATCTGAACATTACATGATTCTAGATACAGATCAGAAAACCATGGTT
GACATGATTCTAAATACAAAACAGAAAACCACGGCTAGAAGAGGACGACATGTAGATGCA
TTGCTTCAAATTTGTTTGGATCCTTGTTCAACAATTTTCACAACACTACGAGGCCAATCC
ACAAAAGCGTAAAGTGTCGACCTTTGGTATAACATACTTATCTTGAAAAAGGTTACATTT
AGTACACGAAATGTCATCTATCTCAACAACTTGCACCATTTCTGTTTGCTTATAAAGTAA
CTTTAATTAGTGCCAACTACGTTTGTAAGCATTAGCCAAAGCAACACACCATGGAACGCA
AAAACCGTGTCACTTAGCAATAAATAAGAGGAAGTCTCAACCCATCTATTCATCTCCACC
AACACCAAAACAACGTTGAAAGCATGAAGACCTTATTCCTCCTAGCTATCCTTGCTCTTG
TAGCAAGCACAACCTTCGCGCAATACTCAGTTGGCGGTGGTTACAATGACGTTGGCGGAG
GAGGCGGTTCTCAACAATGCCCACAGGAGCGGCCGAACCTAGGCTCTTGCAAGGATTACG
TGATGGAGCGGTGTTTCACGATGAAGGATTTTCCACTTACCTGGCCCACAAAATGGTGGA
AGGGAGGCTGTGAACAAGAGGTTCGGGAGAAGTGTTGCCAGCAACTGAGCCAGATAGCAC
CACAATGTCGCTGTGATGCTATCCGGGGAGTGATCCAAGGCAAGCTCGGTGGTATCTTTG
GCATTGGGGGAGGTGATGTATTCAAACAAATTCAGAGGGCCCAAATCCTCCCCTCAAAGT
GCAACATGGGCGCCGACTGTAAGTTCCCTAGCGGCTATTACTGGTGATGATATAGCCTCT
ATTTGTGACCAAAAAACTGTCACATACCACAACATGTGACAAATCAATGAGGTCATGTAA
TCATCTATGAATAAAATTCCCCTTGTATATTGGCCCGTGTTGGAGATACCTGTGTATGAG
TTTGTTGATGGTGGGTTGTGTGCATATTTGTGCTCCTTTAACAATTATAAAAATATACAG
ACTTGTTTAATACTTAACCGAGAAAGGGTTTCCCCTCGCTTTGCATATTTGCAACCAACA
TCGTGTAGAGACATTGCTAGGACGAACAACACATCAAGCCCAAAAAAAGAAAAATGAACA
AATGCCAACAGCGTTAGCTCGAAAAAGAGCGGAAGATCCGCCATCGTTGCGCCTTCCGGA
GATAAACCACCACAGCCCGAGGCTTCGATCCGATGCGTGCCAAGCAGCACCTCCAAGAAG
GGATGCGACGTCAACGACGCTGCTGCCGGAGCCCAACCGGAGCCGACCAGCCAAACCACC
GCTTAACACCATACGCTAGCGTAGTTGCGCCACCATCCATGCAGTCTCACTCCAAACACC
AACACGAGGCCAAGGAGACCGGAGAGCTGCGCCAAACAGATTAATTAGCAATAAAAAGGT
GCATGCACTCATTTCCCCAAAAAATATATATTGGTAATTGAGTTTTCTCTCTTTGTCCTA
ATAAACCCGAGCTAAGGG