| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location |  |
Predicted Genes from contig_97933
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_81733 |
1 |
918 bp |
MLOC_81733.1 |
Available |
Available |
LOC_Os06g42380.1, FRAME:+1, EVALUE:2e-120, 13106.m04433 protein retrotransposon protein, putative, unclassified |
| MLOC_81734 |
1 |
1121 bp |
MLOC_81734.1 |
Available |
Available |
LOC_Os10g37170.1, FRAME:+1, EVALUE:2e-49, 13110.m03370 protein retrotransposon protein, putative, unclassified |
| MLOC_81735 |
4 |
1315 bp |
MLOC_81735.1 |
Available |
Available |
None |
CDS Structure of MLOC_81733
CDS Structure of MLOC_81734
CDS Structure of MLOC_81735
Contig Sequence (6811 bp)
>contig_97933 6811 assembly3_WGSMorex_rbca.fasta
ATATTTAGAAACGGAGGAAGTATAAGTCTTTCTAGAGATTATATTAGAGGACTACATACA
GATGTATGTAGACATACTTTAGAGTATATATTCACTCATTTTGTTTTGTATGTAGTCATC
TAGTGAAATCTCTTAAAAGATTTATATTTAGGAACGGAGGGAGTACTAGTTAGGCCCTAT
GTTTTATGCGATGGAATAGAAACCTAACTCTGCGTTTGGATGTCTGTATTGGAGGTCTTC
GTATTGAATTGGTTTCAATTTTAATTCAGCAAGAAAATTGTAATGGACACGAATACGAAT
TTGCTTGTTTGGATCCTCATTGAATTGGCTCAAGTAATCTTAGTGAGGTTTCAATACCAA
ATCATGTTTGGCCATGCAATTACATAGTGCTTTGTTCTATACACACCAAATCAAATTTGT
GCAATGTGTGACTATAATTGAATGTTTTTTTACGGGTGTATAATTGAATGATTATATAGC
AATAAAAAATAACAAATATTCCAGAAATGCATGACGACACCAAATAATATTCACACAACA
ACACCAACAATAATACTTTTTTAGGGCTAAAAGAGAGCTTTATATATCTCTATCAACGGT
GATACAGTCGTTCAAGATTACATCACCAATACTCTTTGCCATACTACCTAACATCTCGCA
TAAGAAGCTAACTACTGTGCGGTCAGATTACACTCTCTCTGAACTTTGCTAATAGTGCAG
GACTGGAAAGCTTTTCTTAATTCGCCTCCTCGTAGATAATCCACCATGTAGATCGGTTGA
TGGTCCTGGCATTCAGCGCCGCAACAACAACAAAGTAGTTATATCTGTGTAGCATTAAAG
CAAGAAAGCTTGGGAAGAAAGAGAGGGCAGTAGAGGGGGGTCTGACAGCAGAGCACATAT
GGAAGGAGAAGACGAGATGGGAAATCAGGTAGAGGAGGAGGGGGTCGATGGTATGGAGGA
ACGCTGGAGCAGAGGTACGGGTAAAGGAGCAGCGATGGACGACTAGATCCTCGCCAGGGC
GGACATGGGAGGAGGACATCGAGCGGCACAGGAGATGGGACGCCATGGGGGGAGGGGAAC
AAGCAGCAGCGGTGGGTACGCCGTTACTGGAGGAGGACCGGTGAGAGGAGCTTACGTGGG
CGCCGCCGCCGCCGCCGCCGCAGTGAGTGTGCTGCCCTGGGCGCGGCTCCTCCAGCCATT
AGGGCCGTTTTTTTTACCCTGGATTCTAGAGAATCAGGATTATGGGAAATTCTCCCAGAA
TCTACTTCTTCCTGTAGTCGAGTTCTTTTCAGAGATTGTAGTTTGAGATTCTGAAAAGTG
TTGTGTGTTGAAATGTCTGTACTGCCCTTAGACAGAAGTTGTTTGATGTTAACAGTTTGT
TGTTTCCATCAGTAACGAAAGTGTAATTTACGACAGTCCATAAAAAGTGCTAAATATTAC
AATGGGTTTAAAGTTTTGTTCATGACAAAAAGTGCATAAACTAAAAAAAAGAATACTCTC
AAGGTACGAGACTAGCAGCAATCGCCTCACGTGTTGCGTTCATGGTACCATCATCTAACA
AATTCAAACACCAATCCATCCATCCATCTAACAAATTCAAGCATCAATCCATCTATCTAT
TTTATCTATCAACAATAGCTATTTTATCTATCACCAATAGCAGACAGAATGAATAGGGAA
GAAACGGAGATAGGAAAAAGAAGGCTCACCGTGAGCTTCAGCGTGGTGTACTGGCCAGCA
AGGGCAGACTACAGGGTGGGGCGGACCTGAGGAGGTAGGCTGGCCAGCGGCAGCGCCGTA
ACCCTAGCCGCGGGGCGGGGCGAACTGTGGGGCGGGGCGGGGCGGACCTGAGGAGCGAAT
ATGCCGGCGGGGGGCGACGACGGCTTGGCCGGCAGTGACGGCGAGATGGGCGGCGAGGTG
AGACAGGAGCAGAGCGACACCCCGATGCGGGAATCGTGCGAGCGAGACCGCGATGCGGGA
GGCGCTCGGTCGTTTTCGGGTCCAGCGGATGATAGCTCGCTGGCAGTTTGCACATATTTA
CGTGATACAATAAGGGCATAGCTTTATTTGGGAACGTTTTTTTTTGGACCAGGCAGAATC
TTGAGATTGTGGGAGAAACTAGGTTTTCCATAGATTTTGAATTGGACTCGGATTCTACAC
AATCTGATTGAGATTTTGGAAGTTCTTTTGACTCAGGATTTTCGGGACTAAGATTCTCTA
GAATCTGCTCAAAAGAACTGGGCCCTAGGTCTCACAGCGGAAAGAAGGCAGATTCTGCGC
GGGGCCATCGCACCAATCGTTTTCTTTTGCTCATTGTAAAGAATACACAGATGACGAAAT
AAAAACTGCATTGTTTCAAATGGGACCTACGAAGGCACCTGGACCGGATGGTTTCCCTGC
TCTTTTTTATCAAACACATTGGGATTTTGTGCAGATGGAAATTTGTAACGATGTCCGAAG
TTTCTTGACTGGAGGAACCATCCCCACTGGTTTTTGTGATTCAGTGATTGTGCTCATTCC
AAAGGTTAATAACCCTCAACATCTCAAGAACTTTCGGCCAATTAGCCTCTGTAATGTCCT
TTATAAACTCGCCTCGAAGGTACTCTCAAACCGACTTAAAAAAATTCTGCCTGAGGTGAT
TTTAGAGAATCAAAGTGCTTTCATTCCTGGTCATCTTATCACGGATAATGCTCTTATTGC
TTTTGAAAGTTTACATACGATAAGATCTCAAAGAGTGAAAAGCCTTACTTTGCTCTCAAG
ATTGATATGATGAAAGCATATGACCATGTTGAGTGGAATTTTCTTCGTGGATTCCTATCA
CGGTTGGGTTTTGCTGATTCCTGGATATACTCGGCGATGAGGTGTGTTACTTCTACTCAT
TATGCTGTCCGGGTCAATGGAGATCTAACAGAACCTGTGGTGCCAACCCGGGGTATTCGC
CAAGGTGATCCAATCAACCCCTATCTCTTTCTTCTTTGTACTGAAGGACTGTCTTGTTTG
CTCAAACAGTAGGAGGACCAAGGTGTGCTACATGGCATTAAAAATGGTCGACTTGGTCCT
GCTATTTCCCATTTACTGTTTGCAGATGACATCATTTTCTTTGCAAGAAGTGACATGAGA
AGTGTACAATCTTTGAAAGATACCCTTCACCTATATTGTCACGGCTCTGGACAAAAGATT
AATTTGGATAAGTATTCTATTTTCTTTGGTAATGGTTGTCCGGAGGTGATCAAGAATGAG
GTTAAACATATCCTTGGCGTTTTCAATGAGTCACTACAAGATTCTTATCTTGGTATGCCA
ACAGAAGTGGGGCGATCAACTACTATGACCTTCAAATTTTTGTATGATCGGATGTGGAAG
CGTATAAATGGTATGTCTGATCGATCTTTGTCTAGGAAAGGAGTGGAGATTCTTTTGAAA
TCTATGATTCAGGCGATTCCAACATACATTATGAGTTGTTTCCATCTTCTTGTTGGTACT
TGTGAGCAAATGAGGAGAATTATTGCTGATCAGTGGTGGGGTTTTGCTGATGGAAAACGA
AAGATGCATTGGCGTTCATGGGACTGGTTGACATGTACAAAAGCTATGGGTGGTCTTGGT
TTCAGAGATATGAGTATGTTCAATCAAGCTATGTTAGGCAAACAATGTTGGCGGTTACTC
GCAGAACCAAATACCCTATGTGCTCGTGTTCTTAAGGGACGTTATTACCCAAACATGGAT
CTTTGATTTTTTGGCAAGTTGCGATGATCTTTCTGCTATAGTTCTTGCAGTCATGTGTTG
GCATATTTGGGATGCTAGAAATAAACTACGAGAAGAAAATATTACTCTGCATCCTTCTAG
TCTGGCTCTGAAAGTTAAAGCTTATGTTGACATGATAGTGGAGCATTTGTTCATTACCAC
AACCAACCATAGGCGTGAACCCTCTACAACAGCATCCTTCCGCTGCCGGCACGTAAGGTG
ATGATAAACGTTGATGCTGGCCTATTTACACATGACAGGAGCATGGGGGTAGGTGTGGTG
ATGCGAGAACATTCAGGATCTTGCATTGTTTGTTGTGGTATTGGTGTTTCTGATGTGATC
CTTCCTGAGCTAGCAGAGGCCATTGCAATTCAGAGAGGTTTGCATTTTGCATTGTGTGAA
GGAATTCAGGAAGTCTTACTTGGTTCTGGTTGTTTGACGGTTGTCCAACGTATCAACTCA
CTGGGCCAGGATCGTTCTATTTGTGGTCGTGTGATTCAGGACATCAAGCAACTAAGAGCT
TTGTTCACTAGTTGTTCTATATTTCATGTGCGTAGGGAACAAAATGTTGTTGCACATTTG
TTGGCTCGATCATGTAATCAACTAGAGTGTCGTGTTTGGCGTGGTGTGTCCTCGAAATGT
ATCCGGGATGCTATTTGTATGGAAATTATGCCATAATCTATAAAGTGAGTATGTTATCAA
AAAATCGGTTTCTTTTGCGGGAGTGTGTCAATTCGACCGAAAACGGAGTGGCGGAGGTCT
GTATTGTGGGAGGCGTTCGTGCGTGAGAGCCAATTCGCTCCTGTATTTGGGCTGAATTCA
GCCTTGCATTTCAGTGCGCATTCAAACAACTGAATTGGCTACCAGACAATATCAAATCCA
ATTCGAAGGTCGAATACAGACATCCAAACACAGTAAGGGTAAATTTTTGAATTGAACTTA
TGTGCCTCCGTGGCATAAGTCCTTCATCGCTCACTTTTTTTTGAGTTTTTTTTTCGTCGC
TCACTTTCAAACACACACGACACGAACATACGGTGTATGTACGGTATAATACTTAGAAAT
GAAGGAGGACAATGAAAACATACCGGCAACACGAATTGCTTAGCTGCTGCTTGGTTATCG
CGAGAGAAGATCCTCCGCCCGTGCTTGCCTGCTCGGCCTCGGCTAGGTCTGCCGCCGGAC
CCGCGTTTCCTCGGGTTCTTCCTGTCTTCCTAGACGAACACGAACGGAGCGGAGGTGGAG
GATGATGGCCAGGGGAAGTCGGTAGGTAGACTCACGGTGGCTGGTGCGTGGCGCGGTGCG
GCCAGTCGGCAGCTGCGCGGCGGCGGCGGAAAACGGGATCGGGTTCATACGAGATGAAGC
GAAAGATACGAGAGGGAAACAATCGCTTATGCCCATGATTCGTGCATTCCCATTATGTTT
TTTCACAAAAATTAAAGAACTTTGAGGGTATTTTCGTATTTGTGGCAACGACAGTGAACC
ACCCGTTTCTGCCAAAACCGTCCGGCTCACGATTTTAGCAAAAAACACACGGTTCACAGG
TTCACAAAATCGTCCGGTTCAAACGTTTTCTGTTGTTCGATGTTGGGAACGTTTGGTAGA
GCCGGTTGTGGGTTTTTCCGGTTCGTTTGTCACTCAAGTAAGAGCATCTACAGCCTGGCG
GCCATACCCGCATCATACGTCTGGGCAGGCTGTCCGATCACTGACCGGTCATAAAATTCC
GATCCAATCGGGTGCTTCAAACGGGTCTCAAACGTCTGGACTGACCAGCATCCCTCATAC
GCGCGTTGACCCGCATCGAGCCCACATATATTCGTCCCATCCGCTCGCCACACTAAACCC
TAGTCACTTCACTTCACTCCCCTCCACTTCCATCTGTCATCCAAGCTCACCTTCGGCCTT
CTCCGTCATGGCGGGCAGTGGATCCGAGTCATTCATCTACAAATTCGTCAACCACAAGCT
CATCACACGCGCCCGTGAGGAGGAGATGGACGTCCGACTTGTGCTCCACCGCTTCCGGGA
GGCAGCTGGCCGACGGCAACGCTCGGACTCGCAACGTCAGAAATCCATTGCATCGGCACA
ACTGGTGCATGGATTTGGCGTCGCTACCTCACCAGAGGCGGTACGGTCCGTCTGGTGCCT
GAATGTTGTGGCAGACATGCAACCCCTCCGTTGGTGTGTCAAGGACGCATCGTGGGCGTT
CGAGGACGCAAACATGGCGCGGCGTGCCCGCCATGCGAGGCAGCAGGAGGCTATGGAGGC
CCTTGCAATGGTGGACGTTGGAGAGGCGGAGTCACACTCTCCCCCCTTCCCACCTATGGT
GCACCAGTGCGGGCGCCACACCTGCATCATGGCGGATGTCGGCTCCTTCCAGGAGGGGCT
CGTCATCGATCTCGCGTTCACCGACATCGTCTGGGTTACGGGATCCGAAGAGGAAGAGGA
GGGCATGGGAGATGAAGGGAGCTTGACTCCCGTGAGTCGGCTAGTGTCTCATGTTTCTAC
TCTACTTCGTCGGCGACCGGACCGACACTACGAGGGGCGCAACTAACCATCGGACATGAA
CACAATGGAGCCAAACGAGTTCCACTTATTATTAGGTTTATGTTGCATGTAGTAATATGG
ATTTGAGGTTTCTAATTGAAAATATCCGGTTGTAGAATACATTATTTTGGGCTTGACCGG
TTAATGCCGCACACACGCTCGGACGTATCCCATTTGAGTGATTAGATTTACCAAATTCGG
ATATAGATGCTTTAACCTTATTCATACTTGCAACCACGTTACTTTGGATTCAAGATTCCC
TATAGTCAAAAACAACTCTATCGATAAACTCTACAATAACTATCGATACAACGATTCTTA
AAAATGTACTAGTATAATTCTAGGAGAGGCATCATATCTATCCAGATAATCGTAATTTAT
AAAAGCGTCCTTCATATCACACTTTCTAGCCTTCATATTTACCGTCTCAAAGCTAGCTTG
TGAAGTTCACTCTATATAACAACTGTGTATGACGCAATGAAATTCAATAAAAAAATCTTA
TTAACAAATGGAAGTAGATGAGTTCTCCGGC
