morexGenes - Barley RNA-seq Database

Contig contig_97847

Source Contig contig_97847

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_97847 (3630 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_97847

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_81715	1	262 bp	AK373304	Not available	Available	None
MLOC_81713	1	997 bp	AK373304	Available	Available	None
MLOC_81714	1	234 bp	MLOC_81714.1	Available	Available	LOC_Os01g34860.1, FRAME:+1, EVALUE:2e-19, 13101.m03521 protein expressed protein

CDS Structure of MLOC_81715

CDS Structure of MLOC_81713

CDS Structure of MLOC_81714

Contig Sequence (3630 bp)

>contig_97847 3630 assembly3_WGSMorex_rbca.fasta
CCCCCGCCGCCACCCGAGCCCATCCGCATCCTCTCCCCCACTCTTCGGCTTCAGTATGGT
CCGTCAGAGGGTCACCACCTACGTTCAACTCATGCCGAAGCGTCGAATGTCGATCGAGGC
AGAGATCCAGGCTCGACGCGTCACCCACATCGCTGCGGGTCTCCTTGTGAACTCGTCAAA
AACGGAGGAGGAGTAGGAGGAGGAACAACCAAATTAGGAGGTGTCGGAGGCCATGGAGGA
CGACGATGCTCCGGAGTTAAACATGGCGGAGGTGGAGTTCATCATCGCCCAAGCCGAGGA
GATGGTGTAGCAGCAAGCCATCCTGGATTCCATCCGAGATGAGGCCGATGTGGAGGCCAA
CCTTCGGCTCATCCGACAAAGGGAGGCGGAGGTCGACGCCCTCTTCGACGAGTTCAAGGC
AGACATAGCGGCGGAGGAAGCTGCAGCGGAGCACCCGGAGGGGTCGGAGGGGGCAACAGC
AGAGGCGTCGGAGGGGATGGAGCTGCAGCTGCAGCTGCCGCACATCTATCCGTCGGAGGA
CATGGAGATCGTCAAAATCTTCGACAAAGGATATACATTTTATATGTAGTACATATGTTT
ATATGTTTGCATGATTTTGTACGGATTCAAAGAATTAACATGAGATGTTCACATGTAGTA
GTTTTTTTAGACGTGCTTGTGAGTACTCGCGGACGTGTTAGATTTGCAAGTTGGGCTGTA
GATGCTCTAAGATCGGAACGACTCGTGTAAGAGGGCACCACATGGCTTTTTTGTTTTTGT
TTTTAGAAGTACGTGGGCTATTTTCTGTGCTATTCTACGTACAAGCGGGTAGCCGCTGAC
ACCAGTGGAAGCCGAATTGAGGCCTGCATAATCGGCCCGGCCCAATCAGCCGGAGGTCGA
CGACTTTGGTCTGCGACTTTGATGCGTGGATGCCCTAGGTCTTCTCCTTCCATCCTCCCC
AACATTACTCGCTGCCGCTGCCCTTCCCATCCACACCCACAAGAAACCGCCGGCGAGGAA
AGAAACTCGATTGACAATGCATGGCAAGCGAGACCGCCTCATCGGCGACCGTTGTCTTTC
CATCCTAACAGATCAGAAGCAGGATACATGCCGTCTGCTTGGTTATATCCATGGTTTCTA
CAAGGAGGTGCTCGACCGGCTTCCGTTGGGGGCGATTCCCTCGCTGGCCGTGCGCCTCCC
CAAGGCCGGCATGCCCATCGGCTTCCTCTACCCAGTCTCCAACATCATCGCCAACACCAT
CGCCTAAATCCCTTCACCGACGCCTGGATCCTTCGACAACAACGAGGAGGGGGATGAGGC
ACCGTCGTCAGACTGGATCCTCTCCAAAATCATCACCGACACCAATGACTTATTTGTCTT
TGAACTGCCGCTTTCCGGGCACCAGTCTACGACCGTCGCGCAGCTGTCGCTTGACGGTCT
TGTCAGCTTCCTCACCTCCCACTACCGCTACCTATGCGGTAGGGAAGCCATGAGCTACTT
GCTCCTGGCCAGGGCCGATCTTCTCACCGCTGTGCGCCTAATCGAGCGAGATCGTGGCAA
TAGGTGCAACTCCTTTAGTATTTCCTCCACTACAACCAAGATCGCCCTGGAATGTGCCAC
TGTGTCAGTGAGGCATCCTGAACCAGACGTCCTGGTGAAAGCGTCGTTGACTATGGCCTC
TTGCCTGACCGATGTCACCGCAGTTCTTGCTGGACAAGGCCCTCTCTCGCTTGCAACTAT
CAGGAGCATCACCAAGCTGCTCACGAGAAAGCCTACGATCATGGATGTTGTCACCAACTT
ATCACTGGATCATCTTTGTGGTTACAAGAAGAACAAGAAGAGAAAGAGAAGCGAGCAAAC
AACAGAAACCAACCCATCACTGGAATGGATCATCTTTGTGGTAAGCAGAAGAACAAGAGG
AATAAGAAGAGGAAGCGAAGCGGGCAAACAACAGACACCATAGAGGGGAGCAGGGCACAG
GAAAAGCTTGGGCCTGAGTTCACGTTCAGATACACACTGGCTCTGAAGCTTTTGCTCTTA
GGCAAAATCCATGGGCACTACTTGCAAGCACTTGCCAAGCTGCCTTGGGATGGCTTGCAC
AAGCATCACCACCGCAGCCTCCTCAGGGGTGGATATTGCTATGGCCCCAATGATCTGGTC
TCCAACATCATACTCAACACCATCTGGTATGGCTCCATGTTTCCCACACCCCAAAAGTTT
GAGCTACAGTTTAAGGTGGATATGATATGCACAGACATGCTTACACGCATTGAGTGCTGT
TCTCTTTACGGCCTTGTTGCCTTCCTTCGCACCTGTATCCCCTCTATCTCGGAGCACGAT
GCAATTTGGTATCTGTTCAGGAGTGATGCTGATGTCCACAAGGCCATCTGTGAGGCAATG
AAGCATGATCATTCTGTGTCTGGCAGTTACCAGGACGCCTATAAGCAAGCAGCGGTTGTT
TCATGGCATGATGACCCTGATGTGGTGGTGAAATTTACCACGTCTTCGTTTAACATGGAG
TTTGCTAAGTTGTTAGCTATATTGCAGGGCACACTCACCGACGGCAGAGTTTAATGCCTC
ACCATGGCTCTGCCACATAAATATCCACCTACCATGTCTGAGGAGCAGGCTCAGCAAGTG
ACCCAGCCGACGTCAAACTCACATGTCTTGAGAAAAAAACAGAAAAGGTTCATTTCGGAG
TTCCAGAAAAAATTTCGTCGCGACCAAAACTTCTACGTCAGAAAGGTCAAGGCGGCATTG
AGCGACTACTCTCAGCAAAATGGGGTAGGTACATTTGCTTCTGTTTTTTGTTTTCTTCCT
TGTGAATTCTAACATGCACCAATTACTTTCATTTGGTCAAAACCTTTTTTCACATATTGC
CTGCCCTTTTCTGCATTGTTACTTATAGGTGGACTATAAACTTCATATCATCTGCGGTGT
GAATCCTAATGTACCAGGCGGATCAAGTGTTGCTCTTTTTAAGAAGAGGTTCCCATTTGA
GTACTTCCATATCAACTTCTTGGCAACAGCCAAGGGACCAAATTCTCCTGTTGCTGCTCC
ACAACTGTTCCTCGCTCAATGTAGCAATAGTGTCAAAGAGAGGCGGAAGAGACCATCCTA
GTCCTCCCGTGTATCAGATTCTCGCATAGATAATGGTATGCTCTCAGCTCTCTCTTTTCA
TGAACATACTGGTATTTGGTGGCAATTTGAAGTTGTCATTATTGCCTGTATATTTAACAG
TTGCAAGACATAAAATAGTTGGTCGAATTAGTTATGCTTGCACTACTAGCTGTATATCAT
TACTGTCATACAAATTGGACAATAGTTTTTTTTGTACTATCACAAAGCTTGATTAGTAGG
CGCAATCAAGCCCCTCATATAAATGAATTAAATGTTGTTTCTAAAAACTGGAAGGGAACA
TTTATCACAGCCGAATTGCGAAAATGCGTTGGTGAAATTTCTTAACTTTTCTGTTAATGC
ATTTATATGTAGCTGCGCTATGAGGCTGCTCATAGTGGGGAGTAAAATATAATAGTATCA
TGCATATGTTACTANNNNNNNNNNNNNNNNNNNNNNTGCATAGTATCATAAACTAGTATC
ATAGATGTTCTCATTTATTGACATGCATGA