morexGenes - Barley RNA-seq Database

Contig contig_97564

Source Contig contig_97564

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_97564 (3890 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_97564

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_81672	3	1401 bp	MLOC_81672.2	Available	Available	LOC_Os02g43620.1, FRAME:-1, EVALUE:0.0, 13102.m04846 protein transporter, major facilitator family, putative, expressed

CDS Structure of MLOC_81672

Contig Sequence (3890 bp)

>contig_97564 3890 assembly3_WGSMorex_rbca.fasta
ATCTATCCTACTTGTTCAAATAATTAAAAACCCAATAATCTAACTCCACCACGGGCTTGC
TACATCCACACAAGGCGCTTCATCTACTGGGATCAAAACCAAACGATAAACAAAACAACA
ACAAAAATGATGACCATGACCTACGGTTCATGGGATGGATAGCATTGACGCGCCCAACGG
CCAAACTAGGAGGAACTATGATGTCTAGGAGATAAGACCCGTGATGTTGAGATGGTGTGC
AAGAGGAATTGGATAGAGACTCACCGAGCATGAAGATACAAAGCGATGAACTCGACGAAC
AGTGTATACGGACATGCGGAATTCTTCGCGTGTGGTTGACAAATCACGTTCTTTCTTCTC
TGAACGGAGCTGCGGCATGAAGAAGAAGCTTCTGGCGCAAGGATACGGATGGAGACGACC
TGAGTCACCAAGTTCATGCACGGGCTTCCATGAAGCTTTACAATTCGAGAGGGATGTCTT
GGACAGAGGAGGAAGGCAACAGGGAGGAGAAGTGAGAGGAATGGAAGAGGAGGTCTCGAC
GCACATATATATGCTCACAGATTTTGAAACGCTCAGAGATCAAGCAAGTTTAAAGGGAGG
CACGTTCGTGGCTTTATATTTAGTCTTCTCTGCTGGTTTCATCTTCTCTCCGTCTGTCCC
GTGAATGGAGAGATGAAGCTTAAGGAAGGTGCTATCGTTTCCTCTCATGATGTCTCTCTC
CGTGTTTTCTCTAATGGATGGACATGTACTTAAAAGAAGAACGGTTCAGCCACAAATTAT
AAAGTAAATGGGCTAAGGGGCCGAGTGAGAAGGAATAAAAAATAACGGGAAGCATATTGG
GCAAGGCCCATTGGGAAAAAGACAAACATGTTGAGAAAGAGACAGATTTGGTCTAAGGAT
TTCCAAAGTTTAATTTGAGAGAAGCAATGGATAAGATCTTTTGAAAAGAAAAGATTTGAA
ACAGGAATGGAAACTCAACAAAAGTCAAAAGGAGTTCCAAAAATACAAATGTGCATAATT
TAATATGTCAAATACAATAAGCATAAAACCCAACTTAAAGAAAAGAACAAAATTAAATTT
TAAATTTAAGTTCACATTAATTAATTTAAACACTAATTGTAAAAGCAAAACTCAACTTAA
GCTTTGTTATAACCAAATAAAACAAATAAAATTTTCTCGCCCTGATTTTTNNAAAACTTT
TTCTTAAACATTCCGAGAATCGGGATGTTACATCCGCACGGTTATGTACCTTTTTTCTCT
GGCGAATATTGTACTCCCGTGCAATGCAAGCTACTAAGCATACTTGTGCTTCACCATGGA
GCCCACTTATGTGGCACGGCACATCACACATGTGCTCCGGCTATGTATGACACGAGAAAA
CCAAGAACAATGAAAAAAAGTAACAAAGGAGAAACCATAGAAAACCAGGGGAAAACCACA
TGTACCTCTCGTTCTCACTCGCACGACATGCGGCAGGCTCCCATGTACCTCTCGCTCTCA
CTCGCACGACATGCGGCAGGCTCCCATTGCCCTCACCCCGTAAGCCCACCGCTCCCAGAG
ATGCTATTCAGCCAACATTGACAGCAAAAGTATATACAGTACAAACACTGTGCATAAAGA
GTCTTGAAGTCATTTGACTCTTTCATGTTCATCTATGAGAAAAGATAGGGATCCTACAGT
ACATTGATACATTACAAGATGTTGCAGGAGGTGTATATACAATATACTATTCTGTGACAA
AGAGAAGGCAACATATGCTATCTCAACCATATTTGCTCGACGTCATCTTCGGCAGCAGCA
TACTGAAAGCACTTCCCAACTATGACAACATTACAAAAATGTATACCGCATTCCCACCCC
ACCTGCGCCAAAAACTGCCTTGCCTTCAACTACTCTCCCCTAAAAGTGGTTGAGCGCCAG
TATCTATGAGGTAAAGAGGAAGGCAACATCAGCGCAACAGACAAGAAACTACATTTGCAA
TCTCTATAATGAAGATTAATGCAAGTTCGGCATCTTTATCATTACCTGCAGTTCCATACG
GCGTGTTACTTGATCTATTCCTCCAGTTTTGAATAATCTGCAGAATCTCTGATTTCACAA
GACCTGATAAACACGCTCCAGCAATCAATGCACAAAGTATAAGCATTATGAACACTGAAT
CCCATCCAGTTTTTGAAATGAAGCCTGTCACAAATGGCCCTAAGGCAGCACCAAGCGATC
CTGTCCCGTCTATGATTGCTGTGACAGTGGCCAACGCACGGGAATCTCCTTTGAGAGATT
TGTGAGTGCCCAAATCAGCAGAAACTGCAGTTGTTATCAGAGCATAAGGTCCATTAACAA
ACAAGCCACTGATCATCATCAGGGCAATGTTTGTCACTTTCGAAGTACTGCCATACGCGT
GAAAGGCGTAAAGTGTTGGAATCGCCAGATACATAAACATTGCTGCAGTAGTGGCCCTAG
CATCGAGCTGATCAGACATGAACCCAGCGAGAATTCCACCAATGATTCCTCCTACATCGA
ACAAAACTGATAGATAACCAGCATCCGTGACCGACATGTACTCTCCTCCAATGGCTGGAA
ATATAAGAAGGCGTAAGTACAACCGTATAAGGTTTTAAATTTAGAGTCCACAAAGGCACA
TAAGAGTGGATGAATAGAGGAGAAATCTACAAAGTCAATACAAAAGAAGGCAGTTAGAAG
ACACAGGTCAAACAAGTTACTACGCGGTACTTTAAGTAATGAAGAGAACAACCCAGGCCT
TTACCAAACAGTGCACATAACCAAAGCTACTGTACCCGTGAGTAAACTGTATCTGGTCTG
AAAAAGCAAAATACTACAGTTGGATCAGATAAACAGGACAACAATTTGAGCATGTGAGTC
ATGTTAGCATTATTCTGTTAAAAGCCACACCCAAGATACGTCATGAATAATCTGGCATGG
CATTAGATCCTGCTAAAGTTTGCTACCACAATGCACATTATCATATCATATGAAAGGCAA
TTACTGCAGCACCTTAAAAAAAATGGTGGCAACTACAACAAACTACGGAATTCTGAAACC
AGAGTTCAATAACAATGCACTGTTGATTCTGAAACTACATCATATCAACTGTACATCAAA
GTCAATTCTGAAACCAGAATTCAATATAACAAGATAAAAATGCACTGTTAATCGTACCAA
ATAAATCTCCTCCACAGCTGGAAGATGACAATTCAGAACAATCTAATGTCATAACGTGCA
TCGCTGCTCCTGGTTAAGTCGCAACAGGTGGCCATACCAGTTTGGGTCAAGTAGAACGGG
AGCCAGTACAAGAAGGTGTAGGCGACCAGCTTGGCAAAGAAGAGGCAGACCGCGAAGGTG
AGCACACCCGGGATAGAAAATGCCTTCCAAATCCCTACGGCGTCCCTCCTGTCCTCTTCC
CCACCCGTGCTGGTGCTGCTGTCCTCCTCGTCGGTGCTCGCTCCACCGGCGTGCTTGGGG
TTGGGGGGCAACGAAGCGAAGCCAACGTCCTCCGGGTAAGGCGCTAGGAAGAAGAACACA
AGAACGCCACCGAGTGCCATGAGCCCACCGGGGACCACAAACGACCAGCCCCACCCGTAC
CGCAGCACGGCGGCGGCGATGATTGAGCCGCTGATGTTCCCGACGGAGGTGTGGGCGTTC
CATATGCCCATTATGAGGCCGCGCCTCCGGCCGCCGAACCAATTGCCGACGATGGCGACG
ACCGAGGGCCAGCCGGTGGACTGGAGCAGACCCGCGATCGCCTGGGCGAAGAGGTAGAAC
ACGATGGAGTGCAGGGAGAGGAAGTACCCGGCGCCGAAGAAGGCGACGGCGGCGCCGCGC
CCGGCCACTCCGGCGGCCCGGCAGGGGCGGAGGCGCCTCGGGTCCCTCCG