morexGenes - Barley RNA-seq Database

Contig contig_97394
Source Contig contig_97394
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_97394 (5871 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_97394

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_81642	4	672 bp	AK252922.1	Available	Available	None
CDS Structure of MLOC_81642

Contig Sequence (5871 bp)

>contig_97394 5871 assembly3_WGSMorex_rbca.fasta
GAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGTGGACCTGCTTGAGC
ACCTTGAAGATGTAGATCTTGTAGGTCTCCACGCTCTTCTTGCCCTTCTTCTTGCCCTTC
TTCTCGCCGCCGCCCTCCTTGGAGGCCGTCTTGCCCGCCGGTAGCCGCTTCTCGGCCTTG
GGCTTCTTGCCTGCCGGGGTCTTCTCTGCTGCCTTCTCCACCTTGTTCTCGGCGGCCGGC
TTCTTGTCTGCCTTGGGGGCCATGGCTGCGGCTGGAGCTTCGGAGGTGAGAGAGGGAGTG
AGGTGTTTCGCTCGGAGGTGGGGAATTGCAGATGTGAAATGAGGATCGGGCCGGCGAGAT
TATATGGTGGGGAGGAGGTCGCGCTGATTGGTGGAGAGGCCGGTGCCCTGGATCGGTAAG
CTGAAGTGATCCCAGCCGTTCACAGATCCAGGGGATGGACGGGCCGGATGCGCTTCGTAG
CGGATTGATGACCTGGCTCAAATGGCCGGCGGGAATTTTATGACTCTCCACGTACTGCAC
CTAGGTCCAAGCTACCGGTGATACACAGTTTGTGTGTGTGGGAAACCGGTGGTACAAGGA
CAAGGATGGTATTACCACATTTTTTAATGAATAAATGTAAAATATCTGGATTCCATGCAG
AGCCTAAGGAAAATGATGGTACCACATTTTTGAATGAGTGAACAAAAAAGGTCTCTACTC
TTATATACTCCCTCCATTTTAAAACGTAGCGCATATTTTATTTTCTAAAAGTCAAAAATG
CTTATGTGGTCCAAAGTTTATAGAAAAAATATTGACATCTATAATATCAAACTCAAACAA
AACAAATAAAAAATGAATCTCATGATCGATATAATGATACTAATTTTGCACTACGAATAT
TATATTTTTATCTATGAACTGTGTCAAACATAGGCTTGTTTGACTTTAAAAGAATATATT
ATGCACTGCATTTTGGAATGGATGGGGTATAGATCATCTTATAGAGATTTGAGTTACAGT
CGTTGACAGCTAATTCACGCTCACTAATATTACCACACAAGTTATCGCGGCGGTCGTCTT
CCCTTATGTATGGTTGATTCAATTTGACATGTTTCTGAAATAATAATTTTACTTTGGACA
ATGTTAGAGATTATAATGGAACGAGTTCATTTTAAAGGACTTACCAATATTGTACATTTA
AATATCTTGTTATTTTGAATGATTGAAGGTAGTTGAGCAAAGTCATTTGTGTGTTTGGTT
AAAGGGGTGGATAGGTTGTTGTGGTGAACTCTATGATAGAGCTCCTAGCACTTATAGATG
GCAAACAATATTTACATCAAGGCAAGAGAGCTTCATCTTGGTTCTCCATCAACGCAAGAG
AACTTCATGTGCGAGTGCATAATATATGAGAGACGCTCAACATTTTAATCATATATTGGC
TCTTTTATTAGACCATCAATAATGCATATGAGAGACGCTCGACATTTTCATCAAGGTCTT
CTCCTTTCAACGACTCAAAGAAAAAGAAAAGAATTTTAGAGAAACACACCGAAGTTTTTT
CTGAAGTTTTTTTTTAAGAAAACAAACAAACAATGGAAAAAACGTAAAGACTATTTACAA
GCGAATCTCCTAACAAGCAAAGGAAATAATTTTTGGTTTCGTTTTAATACTACAACTAAT
TAATCAGGAAAGAAAAAAAACTAGAAATAATTTTGGATTTTTCAAAAAAAAATCAAACAC
ACAATAAGAAAGCGGAAAATAAAGCTAACATGGATATACNNNNNNNNNNNATGAACACCG
ACAATTTATATGAAGCGTGTGAACATGAATGTAATATCGATGGAAAATACGTACTCCCCG
AGCCTAGGCATTTGCCTAACTTGGTGGTCACCATTCGTAGTAGCCATCTGGTCCGGAAAA
GTACTGAGGCTGAGGCACGTGAGCATCCCATGTGTGAGCAGCGACTTTCACCTCAGCCAG
CTCCTTTCGATAAGCGATTATGTCGACTGACAAATGTTGTATATGTTTCTGGCATGATAG
TTAAACAAAGAGGGTGCATGCAACACAATAAGGTCATGAGTATTCTTGATGTATACTAAG
TTAAAACAAATATGCTGCGGGGGGTAGGTTCATGAGTAAACTTATGCTCTATCATGGACT
GGTGATCTAGATAAACCTTAGGCAATAAGTAATCAGTTTGGCGTATGTCCACTTTAAAGT
GCCTTGCTAAGCGAGTGGCATAAATACCACAATGAACCTTGCCCTTGGTTCGGTTAGGTG
CAAGTGGTGTACGACAATAGCTCCTAGGTTGTAACTGCTATCACCATAAAGCGTGCGATG
CAATATAGAAATGGTGGGGGCCCTAAGACCACCACTCTCACTCGTAGTAGTTATACATTC
CCCATGGATACAACAAAGTAATGCATAGACAAGAAATATAAACTGGTCGCCCTAGCATTT
GCTACGCCCCTAGTTTCTCCCAAATTTAAGGTAGGGATGAAGCTCTCCAACTCCTTAATT
TAGGGTCACGCATTGCTCTGTCAAAAGGAAGCAATCACATTTCACAAATTTCACATAGTG
GTATATCATAATGCATTGCATATAAGTCAAAGTGTACCATGGGAGTATCAGGCCCATTGT
TAAAAAAAAAGTTTTGCACAAAGGAATTCATACGGAGATAGTATTGGTCACACTTATCCG
CAAGGAAATTGGTCAACCCGACATTTGCAATGAATTGCATGAACTCTTGATGAAAACCTG
CCTTGCTCATGAAAGGGATGTGTATCCATTCACATGGCCTAACTTTCGTGTTGCGAAAGA
TATGGATGCCATGGTCCTGGATCCTCCCAATAACTCCTTTGGGGCTTCGGCTTGAAGAAC
CTCTCCTTAGGAAATTCATTTTTCTACACAAAAAATTCTCAATGGGGATATGCATATCCT
CGACAATAAGGGTATAATACTTCTTCTTGACAGTAGGAAGAGAAATTTTAGAACCTCCAA
TGGTGACTGTGGCAATTGGCTCAGTGATATTTATATTATTAACCAAAGTTTGCTTCTTCG
GAAAGTGCACGGTATGTTGTTTTCCATTTATATGAAAAGTGACTTTGCTTTTGTTGCAAC
CAATAACAGCCCCTGGAGTGTTCAAAAAGGGTCTACCAAGGATGTTCAACATGTTGTCAT
CCTCAGGCATAATAAGAATAAAGAAGTTTGTTAAAATAGTAACATTTGCAACCACAANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGGATTTATCAGCCATTTGCAATGGTA
TCTCAGTAGGTGTAAGCTTACTGAAATCAAGTCTTTTATATAGAGAGAAAGGCAAAACAC
TAACACCGGCTCCTAAATCACATAAAACAATCTTTAACATAAAAAAATTTAATGGAGCAA
GGTATTGTGTGTATACCCGCATGTGCCAAGTTTGTAGGCACTCCACCATCAAAAGAATAA
TTAGAAAGCATAATAGCATTGACTTTATCCTAAGATCGTTTGCTTAGACATAAAGTCATC
CACAACGTCTTCAATCACTTTCTTGGAGCTAGCTCCACCCCTCGCTGATGCAGCACTCTG
TCGTGCTACCCTCACCTCCGGTATAAGGCCCCACATACACTTCATCCATCCAAAGTTGAA
GATATTCTTTTTCAACAATTCCGCGTACGTAGGGTACCTCTGAAAATTAGAAACAACAAT
AAAAATAATAATTACATAAGAGCATGGGATCTAACTGGGTACAATCTGAAATGAATTATC
AATTACCTTAATGTGGTGCTCATGTTGCTTATGTGGTAAGCTCATTCTTGGTTTGCCAAC
AAGTAAATGCCTACCAGTAACGCGGGGCACTCATATGTTTTAGTTCAACAATCCTATCCC
ACCTTTGCTGAATCTCCTCTAAGTTGCTTTTTGAGCACTTGTTCGGGAGCCTCGGACGGG
GAAAACACTTACCCAACTTCGTACGGTACCTATCACTACAAACTAATTCTTCAAAACACA
CACCTCCCCTAATAGGCATTTGGTTTCTGACGACATTGTACAAGAGCAAATGAGACATAA
GTGGAGTAATATCGCGGAAATTGTCGCCTGACATGACTGGAAATATTGCTAAGGAAAGAT
GCAGAAGATAACATGCGACCGGGCGGGGTTATAGAATGAGGGTAAGGGGTTGGAGGGAAA
ATCTAGCAAAAAGGATGGTGGAAAAATATGAGCGGGAAAAAATGGGCGGAAAAAGAACGG
GAACGTTAAATGGTTAAGGTGGAAACAATGTACTAGTCAGAAAAACAAATTGAACAAAAA
ATACTCTTCAGCCTAGAGGACACCAAAAAACAATTGAGTTTAAGTTAGAGATAAGGAGAT
AAGGAGATAGAGATAGAATTAGTTTAAACCACATGTAACTTGTCTTGTACTTCAAGCCTC
TACCCCTCATGTACTCCTATATATACCCCTATAAGGGTTAGATCAATACAACACAATATA
CAAAACAACAACAATATTCAGCCTTACACAATTTCCACACGGGGGGCGTTTGCTTGATTC
AACAACCGTCCAAACCTGACAAACTATTTGATTGATTTTGGGTTGTATATGGCCCTGAAA
CTCTCTGCCGCACATTCGAGTTGTTATGGTCGATTTAAGCAACTCAGACTTTGGTAATTC
CTGGTTGATTTACAGAACAGGCAACTGAAAATTGGCAGAGGTGATGTCTCTTTCCGCGTT
CTAAAGCAAAATCATAGGCAAGCAAAAGATGACCAAATTGGCAGAGGTGCCTCCTAGTCC
TGCAGATTCAGGGTCTTGACTTTTGGAGACCACCGCTGCGCCTTCACATTTTTCAGTTGC
GCCTTCACATTGTCTAGGTCACGCAGGTGCACACTTGTATTGAACTTAAACTTCTCGATC
GAAGATTACGAAAAATAAATAAGTAATCCAAGATTAAGAAAACAGACATGCAGGTTTGGC
AATGTAAAACAGAGCATCATCTTGTTTTAGCTCAAAATTAAACTAAAAGTACCACTGCAA
GTATTTTGGAACGGGGGTACTTTACAAGAAATGGACAACTCACATTTCCTATTTTCAGGG
TAACACTCTCATGTATGACACCAAGCTACTCGAGTACAAACAATTCTCATTTTGCCACGT
TAATGATCCAAACTCTTTTTTGCCGGGTATAATCATCAGTCAGTGGCAGCAGGTATTTAC
GCCCGGTCAATTGAAGACTAGATTCTGCACCTAATGCAGAAACGGAACCTAATGCTGGAG
GATCAAGAATCTGCAAACTTACTTGCATTGTCAGCAATGAAGGCACGATCATGGCAGAGA
TTAGTTTAAGCACATAGTGAAAATCAAAATCACCAATCATGGCACAGAATTGCATAACCA
TTTCTGAATCTCTGTTGGAACAACAGAACAGTTCGCACTACCAACGAGGGGTCGGCAAGC
ATTAAGCGATTCCCATGAAATTCAGTACTCCAACATTAACATTCAGATAGATCAACAACT
TCAGTTATCACAACCAAACTAGCCAAGCCAACGAAGCGTTGGCAATCATCCAGCACGCAG
GCGGCTACTACTACCACTACTTGGAGATACATAAGCAGAGTCAACGACCACTACATTTGT
CACAGCAGGCGACGCATCATCAGCCTAGGAGGAGGTGAACTTGGTGACTGCCTTCGTGCC
CTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGAT
CTCCCTGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGACTCGCCGGC
GAGCTTCTCGACGATGTCGTTGATGAAGGAGGTCATGACGGACATGGACTT