Contig Data
morexGenes
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Map Locations of contig_9641 (6213 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_9641

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_81456 3 3594 bp MLOC_81456.3 Available Available LOC_Os02g48010.1, FRAME:+3, EVALUE:9e-48, 13102.m05420 protein nuclear matrix constituent protein 1-like, putative, expressed
MLOC_81457 5 1841 bp None Available Available None
MLOC_81455 1 924 bp AK354773 Available Available None





CDS Structure of MLOC_81456






CDS Structure of MLOC_81457






CDS Structure of MLOC_81455






Contig Sequence (6213 bp)

>contig_9641 6213 assembly3_WGSMorex_rbca.fasta
GCCTACTGCCTCTTCTCCGGCGCCGGCGCCGGCCGCCGGAAGCAGGTGCGCGGAAAGTCC
GTCTCTTTACTAGACCAATCATCTCCCGTGACCAAGATTTGGCTGGGTTTTAGATTTGCT
TTGGGTTCAAATTTTGGATTCATGGTTAAATTTGGTGACTGCACAGATAACCTGCTAAAT
GCTAGTATCGACATTGTTCCTGTCTAGTACAGTAACTGATAATCGCAATCCTGCATCGAG
TTAACAGTCGATGCTGATGTTGGATTTAGGAACACATTCAGAATGTCTAGATTTTTCTTT
AATCTTGTACTGTACTTACTACATAAGAACATAGCTAAGACGAATAAGGCTGATACTATT
GCTGCAAGTGCTACGTTTTGACCATGTTGGTAGAGATTTGATGGTTCCAGACAGCCTGAA
ATTCCTCATTGTTCTGTAGTATGAAACTGCCCTCTTTGATCTGTGATAGGAATTGTTGGA
CTACAATCTCGATAAGCATATAACCGACGCTGATTCCTGCGAGAATCCACCGTTTACTCG
TTTCTTCCATGGTGTACAGTCGGAGCAATAAAATGGAGTATCAAGATAACATCCAGCTTT
GCACTTCCTTGCAGGAGGAAGCTAGGAGAGGGCTGGAGAGTGCCTTAGACCAGAACAAGG
CAGGTTTCAGGACATGGGGCGCGGACACTGATACAAGGCGGCGAAGAGAACGGCATGGTG
GTCCAGCTCCTGCTGCCAGTGGTGGTGGCAAGGGAAGGTCTGGAGGTGGAGGCGGAGGTG
GTTGGTTCAGGTGGTTTAGCAGCGGAGGCTTCTGGGACGCGGCGAAGCAGACTGTTCTGA
CGATCCTCGCCATTATCGCAGCGGTAAGCCGGGAATGTTGTCATGTGTTACTACGCCTAG
TCCTTTTTTATAAAAAAGCATATATAGCAGTGCCAACACTTGCTCAACTTTGCGTTGCAG
GTCTTCCTCATCGCAAATTTTAATGTGCTTCTGGCGGCTGCCGTCTATCCGTTGCTGGTC
GTGTTGCGGCAAATACGGCGTGCAATCACCTTTGCGGCTTACTGCATTTCTCGGGCCATG
TCGGCGCCCACTTCCAGGCCGAAACCAACCCCTGTAGACAGGGGTGAGGTGGTGGCTCCA
GCGCCTGTCAAGGAAAGAGCCAGAATGTCTGCAAGAGAACGAGTTGTTGCGAAATGGCGT
TCGGACTGAATTGGAGGACGTTTCAACGCCTTGCATCGTTTTACGGGCTGGTCAGGTAGT
TTTCATACCATGACTGTACAAGTCCTGTTTCTTGTTTTCAAGAAAGCGGCCGGAGCACAG
CACAGACTTTTATATTAGAAGTAGATGGCGTTACGGCTGTTTATGTTTGAATGGGCTAAT
TATAAGCACTATTTCTGTGGAAGATACCTTGGAAATTCCACATTTACTTGTAGCTGGTGG
TTGGATTTGAGCTCTGGGCTTGATCGACAATATATATGCTTATACAGGCAGCTTTCATCA
GCAGCAGACTAATAAGCCTGCCAAGTCTGAACTCTGAGAATGTTTTCGGTTCATGTTCAA
CTTTGGTCCTGTTTTCAGTTCATGTTCGGAGCAACTTTCCTATGTGAATCTGAGAAGCTC
ACTGAAACCTATGTTTTGTTGTGCATATTCACCCTATTCGGACCAAGTTTCAGGATGGTC
ATAAATAGACCTCACCTTAAGTTATGATGCTGACTTGTGTGCTGCACCATGCCCATATCT
TTGTTTTCGGGCAGTTTCATGGCAAATCAAATACTCCCCCCGATCCAAAATAAGTGCCGT
CCGTATCTTTATTTTTCATTGGAGGGACTAGTACATTTTTCTTTGTTTATGACAGTACAC
ATTGACAGGTTAAGCATGTACTTAATTTTTGTATCAGAAGAACAAGATGTGCAATGAGCA
GTTCCACTAGAGATTGTGCATAGAAAAACAACAGCGTATATTGCATATAATTAGAGAGAT
TCCTGTGTCAATCCGAGAAACTCATTGAAAGCTGCAGGTTATATTGCGTATTCAGTCTAT
CACTCAAATTCCAGATCATGAGATTGTGCATATTCAGTGTATCAAGTCAAATTTCAGTCA
GACCCCAAATTTCAGTTATGATGTTGATTTATGTACCGCATCATGGTTCATATCTTTGGT
TTCAATCATTTACAGGGCAAATTATAAACATTTTCTCTTTCTTTGTGACAGTACACATTG
ACAAGTTAGCATGTATTTCATCAGAACGAGCAGCTTTCAATCAACTTATACATGTGCCAT
CATAAATCCAAAAACAGTATATCTCACCACAGGCGTTAATTTAAATAGCATGAAGACGAG
ATTCGTAATTTAAGCTAGCATAGATGACAATGTTTGGAACAGAAACAGAGCCATACATCA
TGATATCAAGTACACGACAGTTCTACATCTAGAGATACCGCGAAACAGAGCACAAGGGGC
GTACTGCTAAGGAAGTACGCCTACTATTGTGATTCAGATTCAGCCTAGCACAAGGTCGGA
AAAACTAATCCTCGGCCGCGTTGGTTTCATCGGCCGCTCCATTTTCCTCTTCAGGCACTG
CCTCTTTATCCAGTTTCCTCTTCTTTTCAGCTTGCTTCTTGCCTGATGCTGGCTTCCGGG
CTGCGTTTTTGCTTCTGAACTCTGAAACAGAAACAGGGCAAAAGGGTGGCGGTGAGAGCT
TGTATCAGATAAATGTTACAAAAATCTTGATGAAGTCTGGGGATGGTGGAGCAAGTTTGT
TTCTAAATTAAATTCTAAGAAGAAGCAGAAAGGATTGAATGCAATCCAATAAACACTAAT
GTTATTTTGAACACCATTGCATCAAAATACAATAGCTATTATCAACTTTATGCCCTCGGA
TCCCAAATTCATGCAATTCCAATATCATAACTCATAAGGATATTAATCGGTCAAAGAAAT
TCCATTGTTGTTAAAACTTCTGCTTACACTCCCAGATTTTTTAAGCCAACAATCTAAATC
ACCGAGCCACTGCACACTTCATTTACATTACTGCATAGAGTTAGCCTTGCAACATATAAA
CTCCAAGCACATATACTTGATGGGCACAGCTGAGGAACAAGAACACGAGATTGCAAGAAA
ACACTTGTATAAGATGGACGGAAGAGAAATCCTACTAAAGGCAGAGGATGGTGGAACAAG
TTTGTTTCTAAATTAATTGTACCCAGATGCAGAAGGGATTTAATCCAATAAACCCAAATG
TTCATTTGAACACGATTGCGTCTAAATCCAATAGCTATTACCAACTTCTACTTATGCTAT
CGGATCCTAGGTTCATATACAACTCCTCATTGGTAATGGTATTAATCAGTCAAAGAAATC
CCAACGCAGTAAAGCCCTTGGGTTCTGTAAGCTGAAGATCTAAAGAACTGAGCCACTGCA
CACTTCATTTACATTATTGAGTAGAGTTATATCCACACATCATCTAAAGTTCTAAACTCA
AAGAACATATGCTTGACGGGCACAGCTGAGCAAGAGCAGCATACTGTAACATATGCTCAT
TATCAACATATGCTACTTTAGTACATACAAGTTCTTCTGCAACAGCAGCTACATCTTCGG
ACTCTTGTTTCTCAGATGGAAAAGCTTGGCTGTTCTTGCCATGCATTGCCTACAAGCCGT
TAAAATCAATTAGCCCAATGCAAACGAGCACTGATATATGCATAAATGTGGGAGAAACCC
TGCGTTGCTCCATATAAAAAGTAAAGGAGAAAATTTAGTCGATCTATTCAACCAGAAAGA
GATGCACAGAAAACTACATCTATTCATAAAACAAAAAGGCACAGTTACAGTTATGCTGTA
CATATCAGGGACAGTTAATTCAACATGGAAAAGATAGACTCTACGGAAAAACAACAAGAA
TGAGTAAACACAAGTGATATTACGGTCCCTCTATCTCACCTCCAAAAGTGAAAAGGAAAG
TGAGTACAACAAGTTTTACTTTATAGCACGAATTTACATCATTATCATTTGTTTGGAAGA
AGAAATAGCAAGATCAAGTTTTAGATTTTTATCAACTGTTATTAATTTCATGAAAAAGAA
AGCAACAGTATGAATGGACGACTAATAGTGGATGATCAACAAAGAAGGATTAAATAAGAG
AATAGTGTCGAGAGATACATAAGCTGAATGGTAGATTCATACCCATTCACCAGATCTAGA
CGCAATTAACCATAACCGGATTATCTAACGATTCCATATCATCCTTCTTGCCTGAAAAAA
TAGTTTCATCGGTCAGGTTACATACAGTAACTTAACAGATTCAAAGCTAACCCGGAACAA
TTTGTACCATTATAGACCATGTCTTGCTCGGTACATAGTACTTGTGAAAAGAAACACAGA
CTTGAAAAATGAAAGAGAAGATAATACTTGTGCATTCCAGAACATAACATCACATGAAAG
ATACTGTCTAAAACAGGAACACACATGCTACATCTTCTCCCAGCCGGGCATAAAGGGCGA
GAGGATGAAAGGGGGGCGAGACCGCGAGAGGATCAAAGGGGGGCGAGGACACATAGGTGG
CAATGACGTGGTCGAAGGTGTCCGCCAGTACTGAGTAGTCCCACATGTCAGCCGCCCTTC
CCCATCTCCTCTTTCACAGTTCTCATAGCTTCCTCCTCTGACCTGTTGCGCCTTTCCCAC
GAGCGAAGAGGGCGAAAAATAAAAGGCGCCTCCGCTCCAGTATCCAACAGTTCAACAGTA
AAGCATAATTTCATGAATAAATTGGAACGAAATCATGGCAATGGATCGGATTTCAGTCAA
AAAGGTAGTGGATGGGATCCATCCATCAAACACGCGCAATAATATTTGCTTGCAAGCCTA
TTTTTCCAAATCAAATCATGCAACAAGAGGAATTCGCTCTGTCTGATGGATGAAACAAGA
GGCCTTACAATCCCCGTCGGCTTCAAACCAAAACACAGAAATTTGATCCCCACTCGTTCA
ATCAAACATAGGAGAATTTTGTTCAATTATAATCAAACAGATCAGAGGAAATAAGACAAG
AAACTTTTGAGATATGAGGCCACAAGATCACCTATTGTTGAGCAGATTCTTGATGGCAAA
GCTGATTGAATCTTGCAGCGTGCCTCGGCAAACAATCCATAGCCTTGCTCGGTGCGACGC
CGTCGGGCCCGGCGCTCCGAGGCGTGGCCAAATCCCGCTCGCGCCAGCAAGCCGCTGGCG
AACGCTTTGGATTCCCTAGGCATCGCCACGGCAACAACACAGGAGCACGACGCAAGAGGG
AGCGACGGCGCCGGCGATGCCGACGGTCAGGAAGAACGGCGGACACGATAGGGAGCAATG
GCGTACGGGACGGCTGGTGGAGGTAGATGGTGAGGCTCCCCATTGACGGCGGCATATGAA
TATCAGTGTAAATGGTACAAGCGATGTGGCTGTTACATTTATTTGATCATTACGCAGTTC
AAGCATTTTACCTATGGGGAAAACTGATGGCATATTAAATATGTAAATATGTACTGTTGA
TATTTTGTGTTCTCCTCTAGTTTTTCCTGTAGCCTTTTCCTCTATCCCTCTCCCTCTCTC
TCTATATATATTATATATTATATTATGTTATGTTATGCTGTAACTTTCTACAGGTCGATA
TGTTTAGCTGATTATTTTACCCATTGTGCTATTTCTTATGCTTGTCAGCTACAAATGTTC
ATGTTCCAAGCATCCTCTTCGGAATATTTTATACACAGCATATTATGTGTAACATGCATC
TTTTTCAGTGAACTGATATTGTCAGAGAATCTGTTTCAGATGGGGCTTCAGAACCTTATC
AAGGATCACGAGGTGAAGCTTGAAGAAAAAAGACGAGATTTTGAATTAGAGCTGGAGAGT
GAGAGGAAATCCTTCGAGGAAAAGCTGAAACATAGGGAAGCTGATTTGGTAAAGAAGGAA
AAAGATCTCAGTTCTCGTGAGAACATAATATCTAAAAGGGAGCAAACATTAAATGAAAGC
AAGAAAAAGCTGGAAGATTTGCAGATTGACCATGATACCAATTCGAAAGCTCTGAAGAAG
TGGGAGGAGTCACTGAATACTGAGAAGGATAGCTTATCCGAAGAAAAGCTGCAAGTGGAC
AATGAACGAAAACAGGCTGAGATGTACAGATCAGATATTGAAAGGCTGAAAGCCACAATT
GAAGCTGAAAAGAAGAAAATTTTAGAAGAACAA