morexGenes - Barley RNA-seq Database

Contig contig_96354

Source Contig contig_96354

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_96354 (6456 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_96354

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_81445	1	977 bp	MLOC_81445.1	Available	Available	LOC_Os06g40740.1, FRAME:-1, EVALUE:3e-76, 13106.m04245 protein expressed protein
MLOC_81446	2	664 bp	MLOC_81446.1	Available	Available	LOC_Os06g40740.1, FRAME:-1, EVALUE:7e-75, 13106.m04245 protein expressed protein

CDS Structure of MLOC_81445

CDS Structure of MLOC_81446

Contig Sequence (6456 bp)

>contig_96354 6456 assembly3_WGSMorex_rbca.fasta
ATCAAACAATTTGTTACCGCTATTTCTGTGCTTGCATAAATTACCTTGCTGAAAACCGCT
TGTCATTTTCTTCCGCTCCTCGTTGGGTTNNNNNNNNNNNNNNNNNNNNAGGACTACGAT
TGATCCTCTATACTCGTTTGTCATCAACGTCCCCGTGCCACCGCCACCCTCCGACGCCGA
GTGGCAGGTCGAGATCGCGCAGATCCGGGAGTCCTTGCCGGAGGATGCGTACCAACAGCC
CAAGTACGCCGCCCACAACCATCCCCCGTGGACGGCGTACTTCCAACGTCGCCACGAAGA
GCAGATGTGGTCCACTAACGGCACCCCAGCGGTGAGGGGCGCCATAACTCCGACGGCCGC
CGTCAATGGTGGGGCATCCCCATGCGCACGCTCCACGGCGTCCTCATGCACCTCGAGGGC
GGCAACGAGCCGTCGTTGGAGTACCCGCCGTCGTCTTCCTTGCGCCGGAACAGGAGCTTG
TGTCTGCCCCGGTGCATGACGACCACGTCGCCATCATCCTTTAGTGCGGCGACGCCTGCC
GTCGCCATCAAGCCCGAGCCCGAGGAGACGCCGCTCGGCCGGCGCAGCCGCGACATCAAC
CTCGTCATAAACGAGGGACACCGCTGATCTTCTCCTTCGCGCGACCACCATAGCCTGGTC
AAGCCGAAGAAGGAGCCCGTGATGCCTGTCATCGTGAAGAAGGAGCCTGTGGCGACCTTC
GTTGTGAAGAAGGAGCACGAGGCCACGACCGCCGACCTCGACGCCGGTCTCAAATGGTCG
CACGACGACTACGTGCGGGAGGAGATGGAGCGCCAGATTCGCGCGCTGCATCGCGGCCGC
GGAGAGGGCGACGTCATCGGCCTCTCCGATAGTGACGAGGTGACCACGCAGACCCTGCCC
GTCCATAGTGACTACCCAGGGCAGGGCTGCAGCAAGGACGAGGACGACCCACTGAGCAAC
GGCAACGGTGACTACACAACGTTCTACAAGCTCCTCGGCATGAACTAGGCTCAAGGCGAC
GCCGGCATAAAAAAATTTAGGTTTTTATTATGTATGTTTTTTAATTTATATAAATGTGAA
TGACATCTTTTTTTAGATTTTTATTATGTATGTTTTTAAATTTATATAAATATGAATGAA
ACCAAATTTCGTGCAAATTTAAGTAATTTTCATCCGAAATTGTGGTTGAAATCAGCGACT
ATGCGGTGAACAGGAGGGGGGGGGGGCGAACGGCCGGAGATACTCAAATAATCAACTTCG
CAAGCCTAACTTAGGTGAATGCTTGGTTCCACATGTAAACTCCCATTTCGTTTCCACGAA
GTAACCAACCAAATAAATAAATATGATCAACTTAGGTGAATGTTTGGTTCTAGCCACACA
TTAGGCAAGATATTATTATTTTTACAGCTAATGCCTCATGCATCTTGCACTCAAAACCTG
TGATAGGATTCTGTTAACCAAGTCAAAAGATGGGCTAAATTCTGAAAGAAAAAAAAAGAA
AAAAAAACTAAGCCAAAGTTAGCTCCCTACTAAACAGGCCCTAAATCTACACACTTATTA
GCCTAACTTAACCCAATCAATCAATTATCAACTGGGCACATTAAATATGTTCGCCGCCTG
AACCCAGCAGGAGAATCCTAGGCCATAATAATCTACATTATTGTCGATCTCCCGCATACG
GTTAGACCGCCATAGTTGATCCTTTGCTTCTGACTCAATCGCTCAAAGAGGAAATCCTCG
CTCCTCCGCAGATGCAGATAGTCGTCCACATGGAACGACGTGCTTCGGTTGTTATCAGGG
CAGCTGCTTAGGCGAGTCGCGGCCTCGTCAAACCTGGAGAGTAGTCCACCTTTTGAGCCA
GCTGAGCTATCATGGTCTCCAGGGCTCCAGCTCCCACGGCTGCTCATGGTGTGACTACTA
GTGCTGCATGCAGTGCTTGCGTCCTGAAAAGAACGGTCCATCAGGGACTTGAAATAAGAT
TTTATAATGCATACAGAACAAGATAAATACTAGTACTATAAGTTCGTCAATTTCCGTACT
ACAAACAAATGGATTGTTTGTCTGGAGGTTTATTTTAGAACAAGATACATATAATGTTGT
TCATTTCCTTGTGTAAAATGAATTGTTGAATACAACTACACAAGCAGTGCAACATACTAG
TAGAAACCAATTGATTGATCTATTTCTGTAAGAAATAGTTTAGTCCAATGTTACCTGTGT
CTTGATTGTGGTGGGGGAGGCATGTAGATCGTTGCTAGTTTCCCATTGCAACCAGGGAAG
GACAACACCATCTGACACCACAGGTGGTGCAACTTTCGGAAGGACTACATGAGTTTCCGC
CATGGCACGAAGTACCACATCTCGTCTAGTTGAACTCGCGTCACTTCTTTCACCATCAAA
CGATGAAAAATCGGTATCTTCAACATTTGAAAGGAAATCTTCAAAGTATAGCTCGGCCTC
TTTGGTAAGGCATTTTGACATCCTTGCTCTATCATTGCTCCTCTGAAACAAATATACATG
AAAAATTGAATTGTATATTCTCAATAACAGAAGAAGTATACAGCAAGTCAGCAAACGACC
AAGAAAGCTTACTCTTCTACGTGGTGGCGGCTTCTCCGGTTTAACATTCTTCTTAGTAGT
AGGCAGTAATTCTTTAACTATTTTTGTGAGTTCATGACCACGTTGTTCTTCTGCCGCCAA
TTGAGCTAGTAATTCCTGCTTCCTCTTCTCTGACTGCAAGACAATGAAAGAATTGAGCCT
AAACACAGAAAGATTCTATGTATAGTGCTCTGATCCAGACAGAAGTGCCAGTTGATAAAA
ACAAGAAGATTTGGAAGATGAAGATTCCACTTAAGATCAAAATATTTGCGTGGTATCTTT
GCCGAGGAATCATTCTTACCAAAGATAATCTTATTAAGAGGAATTGGCATGGAAGTACAC
AACGTGTGTTTTGTCATCACGACGAGACGATAAAACACTTGTTTTTTCAATGCAAATTGC
CTCGTTCTATATGGTCAGTCATCCAAGTAGCTTCTGGCTTGTATCCTCCACGTAGTGTTG
CTAATATATTCGGCAACAGGTTACATGGTATAGGCTACAAGTTTAGAATTCTTCTCAGGG
TGGGAGCGCTTGCCATTATTTGGTCGCTTTGGCTGTGTAGAAATGATAAGATTTTTAATG
ATAAAAGTACTTCCCTTATGCAGGTTATCTACAGATGTACCGGTACGCTCCGTTTATGGT
CGTTTCTACAACGTGTGGAGTATCGAGACCTGTTTACGGAGGTGTGTACACGATTGGAGG
CCACGGCGAGGGATACTTTTACCCGACATGGATGGCAGCATGATCTTCGGATTGGTCCTC
CTACGTCTTAAGCGTTATACAACCTACAATTAATTAATTGTATTTCACCTTTTTGCTTAT
CTGGAACTTGTATTTGCATGTGGCTGTGTGCATCTTAGTTATGCAGAGGCCGGGTGTACT
GCTTAAATCTTTTAAGTAATAAAATGCCCTTTATCGGAAAAAAAAACACAGAAAGGAAAA
ACTTCTGGATTCCACTAAATCATACCTCTTCCAACTTGCTAGTGTAGTTTCTACGGAGCT
CACCAATAACCTGGGTTGGTTGCGTATCATCACTTCTTGCCTTTTCTGAAGGTTCAGATT
TTGTCACGGCCTGAACAATGCATGGTCAAAGAAAAGATAGTCAGAGTTACTGAATCGTAT
AATTTAGAATGTATGAGTAACACTGAATAGCATTACTGCAGGCAGCAGATGAGCAAGATA
AGAGCTTTCCGTGTGGGCAAAACAGAAGACATGTGTTATGAGTGATGACTATTCAACAAT
TAAACTTTTTAGAATCCAGCTCTAAAATATACTACAAACAGATTAGACTAAAGCTCATAT
TGATCAAAAGAGATACTACTTTTGAGGCATCAATGTCATTAGTTAGTCCTCACCATTGTT
GACCAAGAAGCTGTGTTGTTTTCAACTTTTCGTTTAGTTTTCTGCTTATTCCTCAGTGGA
AAAATGACATGTTCAGTTCTAGGATATAGACTTTATGAATCAAGATCATGCATGTTTATA
TATATTATAAACAACAAGACAATACCAACTCCTTCGACTAAGTACTCAAACATGTTTGTT
CAGAACCACACCAAGCAGGTTTACTGATGATATATTTTTTACGTTTTTCACTTATGGTTT
TGAGAAATCAGTATAGCAACACCCTATTATCCTCAGTCATTTCTCAAAGCACTACAATCA
AGGTGGAAACAAAAACAATTTTGATGACATTTCATTGTCCTAACACCTCAGCATAACCAA
TGTAATCCTGGTCATCAACCAGTAACATCATCCATGCTCAACATGGTAGCACTAATGTGA
AATATTTGAAAATTCTTTAAGAGGTGGAGTGGAGGGGGCATTGTTGCACCTTGAATTGAT
CCCTTCCATTGTAACACTCAAACCCTAGTAAATATAAGTAGCTTGAAAGAACTAGTGCAG
CACAAGAAAATAAGCAAAGGTTTCTGGAAAAGTTACCTTCTCAAGCTGAGTTCTGATTTC
TTCAACAGCTTGCCTCACTTCTTTACGCATCACATCATACAGCACATTTGAATCATTATC
TTCAATTGGCTGCTCCAATGATAACATAAAACACATATCTATTAAATGCTAGGTCTTCCA
AAACTCTAGTTGTGGGAATTTGAAATAATATTGTGAAATCAACCTTCTCCTGGGAATAAA
CAGCCCGATTTCCACTGTTACTTCTGCTATGAAAAGAATGAGCATCCCTAGATTCATCAT
CAGTTAACGAAGAATGGCTCTGCAAATATCAACACGAATATATTCAATGTCGAATTTCAA
CCACAAAAAAAAATGAGCCCACGACACATGACAGTGTCAATTGTTATTATGCACCAAGAA
ACAGACAGCACAAATTTCCTCCCCCTAAAAAAAAGCACACCACAAATAGAACTATTACAC
ACCATGTTGCATCACTGCAACAGAAACTAATTGCACTGTGCACCAGCTATATTGCAACTT
TTCGTACAGAAACTAATATTTAAAAGATGATACATTTTTCACATCCATAAATAGCAAGGG
CCTAATCAGTGATCAATAATTTCTAGCAACACAGAAAATACAAGATGAGAGGTACTCACT
GAGCCGCTGTCTCGTAAATGTACAAAATCATTTTGACTTGTAGACCTTGTCAGAGTCTGA
TTCACTTTAGACTTATTAAGTGAATTCTGCAGACTATGGCCATTGCTAGATTTGGTATTT
GTGCCCCTAGAACCAGACCGGCGAGAAAAATCCATATCATTCTGCAACCATAAATGGAAA
AGAAAATTAGAAGCAGCATTAAACATACTAGATGCAATGAATTGCAGGAATACAGGTTAA
GTTTTTTATGTTGTTCAAGCAGAATAAACCGGAAGGTGATAATGGGAACACAAAGTGCAC
GATCAAAAGGCAAAAACAAGGAATCGGATGATTACTGACTTTGACGAGAATTGAACAAAG
CGCACTAGGAGTTAAAATTAAAAGGCACATTAGCAATAATAAAGCAGAGTGATAGCCTAG
TTTTGAACACTATTCAGAACTCATAGATAACATTAGGGCATTCTTAATTTCATTCTACCA
ATGAAAAGGCAGAGCTCCTGGCAATAATTTGAAAAAATATATACTTAATTTCAAGCTATC
AACGGCATTACGTTTACCTACTTGCGAAGGAACAGAGGATAAAAAAATGACTTCACAGTG
ATTCCAGTCACTTGTTTTGTTACAAGAAAAATTGACATTGTGTAGGACATTCTGCTGTTG
AATTCCAAATAATAAACCGTCTTATTTCCATGGAAAGCATCCTATTGTCATGGGCATACA
ATTGGCAACGTATATCTGTTGTATAATATAATTCCCCACTTCCTCCAATCTAATATTAAT
TTTGGATTGTCCATAATAGATCTAAACAAGAACACAGGAAATACCAAAGGAAAAAGTGCA
AAGGCATGTGAATGTCAATTGTAAAGCATGAACTAAGAAACAGTAAAACATAACCAATTG
CTCATTTCTGGCTTATCATGACAAGCATCAGTGTTTATTCCTAGTGCATCTGATACGGGG
TCTACTTACTCCATCTCATCTATTCAATCTGATCAACTAGACTAGGGTACGTAATTAACA
CTGTTATAAATTCAAACATCAAATAGACTCGGATAAAAAAAAACTAAAAAAGAGATGCTA
TTTTGGGTTAAGAAATACAGTACTAGATTCAAACGTGAAATGCTACTGGAACTTACATCC
GATTCACACCACCGCTGCCGGTCCGTGGAGGCACGGCGGTCCACCGAGGCATACCGTTGC
CGGCCAATCGAGGCGCGCCGATCCACCGAGGCATACCTCTGCCTCCTGGCGGCGACGGCC
CCATTTTCAGCCGCGGAGGCCCCGGCCCGCCGCTCC