morexGenes - Barley RNA-seq Database

Contig contig_94529

Source Contig contig_94529

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_94529 (3035 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_94529

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_81119	2	1487 bp	MLOC_81119.1	Available	Available	LOC_Os01g52190.1, FRAME:-3, EVALUE:4e-29, 13101.m05459 protein aspartic proteinase nepenthesin precursor, putative

CDS Structure of MLOC_81119

Contig Sequence (3035 bp)

>contig_94529 3035 assembly3_WGSMorex_rbca.fasta
CTTGGGGTCGGCTGTCGCACCAACAAGCCAAAAACGTTAGCTTGGCTCGGCCTATTGGGT
TGAGCCCAAAATCTCGACTCGCCGGTGCAGACCCATCTTTGATTCTACACAGAATATATT
ACTCCCTCCGTGGCTCCGTTCCATACTAATTGCCACCCAAACGGACGTATCTACCATTAA
AATATACTTCCTCCGTTCCTAAANNNNNNTCTTTGTAGAGATTTTACTAGTGGACTATAT
ACGGATGTNNNNNNNNNNNNNNNNNAGTGTACATTCAATCATTTTACTCCGTATGTAGAC
ACCTATTGAAATCGTTTAAAAGACTTATATTTAGGAACAGAGGAAGTATAATAGATATTA
CATTCATTTCAGCTGCAACTAATATGGGATCATGGGAATAGTAGAAGTATAAACAGAAAT
TCTGCTTGGCATGACTGGTCAACAAACAAACAATAAAAAAAGTAGTCCAATACAATTTTT
CATTGCATCCACTTAAATTCAATCAGACCAAAAAATGAAGATTATTCTTGAACAAAGAAT
TCATTGAAGAAAGAAATAATAGTATAAAAATAAACCATACTACTACTATGTCATGAATTG
AGCGGAAGAATTCAGCCTGCTCGGGGAAGAGGCAGAACCGCGAGTCGGCCGAAGATGAGT
TGAGCCAAAGAATTCATTGAAGAAAGAAATAATAGTTGCTCTGGGAAGAGGCAGTATGAG
AACGGACGTGGACCAACTCATCTTCGACTGCGCACACACGACGGACGGGCTCGAGCGCCT
CAGCCACGGAGTAGCTAGTGTAGTAGTAAAAGGAAAAAAGACAGCGGATATTTCATGGAG
TACTTGAATATCCCACGAAATGCTTCCAAAAAAAGGTTAAGGGGGTACGAATGCACCGAT
CTTACTACTAATTAAATTCAGCATTATAGTATTCTAGGATCCATTAGGCTGGTCATAGTG
GGGGTATCATAACTAATAACATAGTCTTAGCACTAGTAAACATGCATGGTGATGTGACAA
GTAATTAAAGAAGAGAGAGGATTATAGTAACATAGGTAGATACCGTAACANNNNNNNNNN
NNNNNNNNNNNNNNNCATGCATGTTAATAAATGAGATCATCTATGATACTAATTTATGAT
ACTATGCACTATAAAGATATTATCATACAATAGTAACATATGCATGATACTACTATATGT
TACTCTCCACTATGAACAGCCTTATTCATTATTTTTAAACTGTTCGCCCACAATTCATGC
ACCAACCAATGATAAATGCATTCGGCGCAGAAACATATACTCTAGGATCTAGACGTGAAC
CGGGTGTCAGCATTACAATTCTCCTGGGCAAAGTAGAGACGATTGGCATGGAGGTCAAAC
GTGAACCGCGTGTCCATCTGCTGCGCCGCGCCGAGCACCGTCATCTCCTCGTCCGGCATG
ACGGTGAAACACAGGAGCCTGGCGGTCACCTTCCGGAACAGCAGTTCCGGCTTGATGAAA
AGCTTGGCTGTGTCTTCGTACATGTTGATGGTCAAGCTCGGGAGGTGCACGTGGCCCCAC
GAGACAAAGCAGAGGCGGTGCCCCTGCACCTGCGCCTTCGCGCGGCGCGCCCCTTGCTTC
TGCATGTTCGCCACGACCTCGGCCTCGACGATGTCGTATGCCTGGCGAACCAGCCTTGTC
AGCGGAGTCCCCGGATCGACGACGGACCCCCCTCGTCGGGTTTGAAGGTTCCGCGTGAAC
ATCGCCGGCTGTAACCTCATAATTCTTCTCCCGTTCAAGCTGATGCCGACGACGCGGATG
TGGTACATGCCGCCGGAGCCCGGTCCCGTGAAGAGCAGCGACGTGCTGTGCGCGTGGTCG
TGCCTCGGGATGTCGCGGCCGAAGCGGAGGAACCCGTGCTTGGCGATGGGGTGGCTCTGC
TCGGGGAAGAGGCAGTAAGAGAACCGCGAGTCGGCCAGCCCGCGCGCGGTGAGCTGGCTC
AGGAACGACATCGGGTGCCTGCTCAAGCTCAGGGCCCCAGCGAGAACGCCGTGGCTGAGG
CGCTCGAGCCCGTCCGTCGTGTGTGCGCAGCCGAAGATGAGTTGGTCCACGTCCGTGCTG
TGTCCTCCTGCGCCGGTACCGGCGAAGGCGAACATGTCGCTGCCGAGGTAGCCGTGTGCG
GCGACGTTCCAGGTGGTGGTGTAGAAGCTGCACCGGTTGCCGACGGAAGGGGTGTAGGGG
GGCGTACACATGGGGTCCGTTGCCTTCATGTGCTTGTAGCGAGGGGACTCGGCAGAGTCG
AAGACGGCGCCCTCCTGCCGAACCTCGGGCACGCAGGGCTGGCACTGCATCCACGTCAGA
TTGCCGACGAGGTCCAGCCCGAGCTTGTAGAAATGCCGGGTTTGGCCGGAGCCCACGCCG
ACGAGGACGCCGTACAAGGGCCACCCCACGGGTGCTATGTGCGGACCTATGCTCGTGAGG
TTCGCGCCAAGCTGCCCGTCGGCTGTTTCCTGGTTGGACACGACAGGCAGACTGAATCCG
GCGCTCGGTGGTGCCACATTGCCGACGGTGCCATGGCTGGACGAAATCAGCAGAGCAAAG
AGGAAGCAAAGCTTATAGGCATATAAAATAGACATGGTTGCTATGATCGATGAGCAACCA
GGAGGAGAGAGACAGATTTAGAATGCCTCCTTCGTTTGGAGGCCGTGTTCTCCAATTAGT
GTAAGAAGATATACATACATGGCTTAATTGCGCTGACGAGTATCTGATGTGAATCTGAAT
TGTGTACTTCAAACATTAATGCATGTATTACTTAGTGCATCGAAGATACAAGAACGGCTA
ATTAATTAAGATACAAGGGCGGCTAATTAATTAATCCATCTCTGGAGTATGGATATGCAT
GCATTGGTGAGGCGCGCAAGTAGATGCTGATTGTGTGGGCTGAGCACTACTGCCTGGATC
CCCGTGTATAAGGCTGGTTGTAATGGGTAGTATCATATAGGTGGTGTTTGTTTCCAGGGA
CTTTTTGGGGTAGGGACTAAAAAAAAGTCCCAAAA