Contig Data
morexGenes
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Map Locations of contig_94468 (6559 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_94468

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_81109 1 1237 bp MLOC_81109.1 Available Available LOC_Os01g52240.1, FRAME:-1, EVALUE:1e-168, 13101.m05463 protein chlorophyll A-B binding protein, putative, expressed





CDS Structure of MLOC_81109






Contig Sequence (6559 bp)

>contig_94468 6559 assembly3_WGSMorex_rbca.fasta
GACATTGTTTGCCGAAAACAGTTACAGTGCATATAATGTTTATTATGGAAGGCGGAAAGA
TTCCTTGGAAAGATAAAAGTAAAAACTCTTGTTTTCCTACCATGCATATATATATCTCAA
AGTTTCTGGAAGGACAAACTTGTGATTACAAGGTTCAAAACAACATGACCGTTTTTTATA
TGTGCAGAAGTAAGACTAACAAGTTACTTTTTTCGCATGTCATAAATACAGATTTTTTTA
GAAAATTATTTCAGAATGAAATCTCTGAAGAATTATTATTACTTAACAAAGTATTTTACA
AAAATATTTACTTTTCAATGCTTATATTCTTAAGGCAGCCCTAATGAAAAGTGCCACAAG
AGTAGCACGAAGCACTCCGGCCTGACCTTTTTAAACTAAAGTTGTCATCCAAAAGGAACG
CAAAAAATTAAACTAAAATTTGCCATAAATTACCATTTGGAGCTGCGATGTGTTCGTGCC
ACACGTGTGGCACTTATCAAGGTCATAAAACAATGTGTGCCAGAAAGTATATTCTTTCTT
CGTTCCTAAATATAAATATTTTAAGAAATTTCACTATTGAACTACGTACGGATGTACATA
GACATATTTCAGTGTAGATTCAGTCATTTTGTTTTATATGTAGTCTTCTATTGGAATGTT
TAAAAAGACTTATATTTAGGAGCGAAGGGAGTACATGGCTTTGCCTAGATGTTTCTTTAA
TTACTCAAAGGTGATAATGCATATTGCTTTTCCTACAAGAGAATATCACACAGAGAATAA
AATTGTCTCTACAATTAAAGGAATACTAATAAAAATACATTTACATAGTACAAAGGCATT
TGGTCTTTACGTTCCATGAGACACTTAGTAAGACAATTAATATTTTCCATACGTTCCATG
GGACACTTAGTAAGACATTTCATATTTTGGTGTACACGTTGAGTAACATCAGCCGTTTGA
AGTAGTGTTGGTTCGAATAACTGAGTACATTTGATTATTTTAGCGACTATATTTTTGCTT
CATTTTTTGCTAAATTCCTCTTATTTAAGTGAGTCAAATATTTTCACTTCAACTACGGTT
TCAACAGAATTAACATCAAATTGATAGTACTAAATTATCATGACTATTGTAGTATACTTA
AATACTTTACATGAAGAACCATGACTAAAAAACATTTGATTGTCCAAGTGTCACATTAAG
GACCATGCATGTCAATATCCAAATCATGTAAAAGTTATTCCTCTCTTCTTGGCATAAGTC
TTTTGAGGTGTATGAGGATTAGAATGGAAAGCTTGGGGTTGATTTTGAGGCTGACAGAGA
GCGTGTTGAATGATCATTAGATGCAAAATTAGGGGTTTAGAGTGGGCTAGTTGGATCCAT
ATAGCGATGTATTTGTCATCACAAGTTATGGATATCCTGTGAGGAATGACTACCAATGAG
TGCTTAGTGATTTGTGAAAACAAGACAGCAAGCAGGGGCACTTCCGGTGTGGACAAACCA
AACAATGTCTTCGCACACAATTCTCATAATTTACATGTTGGTGTTACAATTCATCTCACA
CTCACATACAACTCGCATTCATCACTCCTGTCTTACTTTCCAGGCACGAAGTTGGTGGCG
AATGCCCACGCATTGTTGTTGACAGGGTCGGCAATGTGGTCTGCAAGGTTCTCCAATGGG
CCCTTGCCAGTGACAATTGCCTGCACGAAGAAGCCAAACATGGAGAACATGGCAAGCCGA
CCATTCTTAATCTCCTTAACCTTGAGCTCCGCAAATGCCTCGGGGTCGTCGGCCAGGCCA
AGCGGGTCAAAGCTGCCACCAGGGTAGAGTGGGTCAACGATCTCGCCGAGCGGACCACCA
GCAATGCGGTACCCCTCAACGGCACCCATGAGCACAACCTGACAAGCCCAGATGGCGAGG
ATGCTTTGAGCATGAACGAGACTGGGGTTGCCAAGGTAGTCGAGGCCACCCTCGCTGAAG
ATCTGAGAGCCAGCCTTGAACCAGACGGCCTCGCCGAACTTCACGCCATTGCGGGCAAGC
AACTCGGGAAAGACACAACCAAGAGCACCGAGCATGGCCCATCGGCAGTGAATCACCTCG
AGCTCCCGGTTCTTGGCGAAGGTCTCAGGGTCAGCCGAGAGCCCGGCGGTGTCCCATCCG
TAGTCACCGGGGAACTCACCAGTCAAGTAGCTTGGTGGCTCGCCGGAAAGGGGGCCGAGG
TAGAGCACACGGTCAGAGCCGTACCATGGGCTGCCCGACGAAACCTGCTTGGCCTTCGCG
GCTGTCTTGCGCATGGTCACACGTGCCTCGCCAATGAGAGCCGGCGAGGGCAAGTTCTTC
AGGGCCTTGCCGGCGAAGGACGAAGAGGAAAGAGACATGGTGGTGGCCGCCATTGCGCTG
CAGAGACTAATAGTGTGCTGTGTGTTCTCCAAGAATGAGGCTTGAGTGTGTGGAGATGGT
TTGTGAGGACATTGTAGCGAGCTATTTAAAGAGCTTGAGCCTTGAGGGAACATAGAGGAA
TTAATTGGTTGGTGTATGCTGACAAGAGAGGCAGAGGTGAAAAGAAATCTGTAGATTGGA
TGCCATTGGTGCAGCCAGAGGCCTTAAATGGATGAGATAGACTTGTGGCTATGGTTAGAG
CTAAGGCTCATGGATGGACCAGCTTTAGTAAGACCGGTCGAAAGAGACTGCTGATTTAAA
AAGTGAAGGCCACTGGCACGGGATAGTTTACCAGTTCATTTGGCCACATCGTCTTGCATA
TTTTCCCAACGTACATCACCCTGGGCGCTTGCCGAACAAATTTGGTATCTGGCGACTGCA
CGCTGAGTTTAATCGTTCCAGAAAATTTTCATATGGTTGGCACACATGTTTTTCGACAAA
GGATGAATATTGTTAGCTCAAAAGGGGGCATCAAGAGGATCCATACACAATGAGGACACA
CCAAGCCCTCCTCATAAATACACACAACCAATACCAACACACGCACTAGCAATGCCAACA
ACTAGCAAAGTATATAATATGAAAGCTATATGACATGACTACAAGAGTAAATATGTTTTT
CTTTGCCTCTTGTGATTTGTCTATCCCTAAAAATTACTAGGGGTCGGCCGGAAACCAAGG
CAAACCAGTGAAACATGTGTGGACAGACCGGTGGGAAGACCAAGTTGATTTCGTGACCAC
CAATCAATTAGCTCTATACTCCTCTGCTTGTACAAAAATAAGACGCGAAGCATGCACACA
TGCATGCAGGTTATATATAAGCATTGGTCAGTGTCTAGCACAATCGCTCATCAAACATCA
CAAAAGGAAGGCACACAATGATCTTTTCACTACATGCTTGAGTTCACTTTGAAAGGACTT
TCGTGGGTTGCTTAAAAAATATCTGTTATGTGTGTGCGTTGATGTTGGTTATGTGCATCC
TAGTTATGTAGAGACCGGGCATGTGCTCATGATGCTTGTATTCTCATGATCCTACTTTAT
GAGTCAAATGAAAATGCCCTTTATCGAAGAATATTTGACCATGAATTTAACCAAAACACG
TGGTTTATCTGTCACAAGAATTGTACGATTAATTTATATTCGGTTTTTTCCATTGCGCAG
GTGACGGGGCCTTGCTGAAAAGAGATGAGGATGGCAAGTTCTTGCAGTGAAAACTGGGGA
AGAGAGTGACATGCATGGTTGCTGCGGCCATCATGATGGTAAGACCGGAGGTCCGGTGTG
TTCTCCAAGAATGAGGAGTGAGTGTGAAGTTGGCTTGAGGATGATAGGAAGTGGTGAGAC
AGAAGAATTTGACTGGCGTAAACTAACAAGTGAGAGCTTCAGAGCAAGAAATTTGTGTCT
TGGATGCCACTGGTGCAGCGAGAATCCGATAGCCACAAAAAGATGAGATATACTTTTGTG
GCTATGGCTGGCAGCCGGCAATCCCCTTGGCCTTGGAGTACCATGATTGAATTACACGCT
GGTGTATGTGAGCGTGTCATGTCTTTTCCTGCAAAAGGAATAAATCGGAAATTCATTATT
GCAGTTGCAGCCAAGGAATCTCGGAAACGCTAGTGGCCACAAAATCTATATCATGGATGT
ACATTGGTTTAACGAGAATGCCAGAGCCAGAAAGAGATGAGATATACTTGTGGCTATGGC
TAGCAGCTGGCAATCTCATTGGATTACACTCTGATGTTCTCCCCCAAAAGGAAAAGATAG
GAGATCCACTATTGCAGTTTCAGCCAGGGAATTTGCCACCTCAAGTTGAGCAAACACTTA
GTGGACGCTATTTCACTGGACTGACTGTACATTTACTGCCATCATTCTGATTATACCATG
GATGCTTCTGATTCTGACGACAGGGATGCATCTCATCATGTCGAATGCTACTTTTGTTCC
AAAATAATTAGCGTACTTACTAGTGCGTGCAACCAAAATTCCCTAGATTTGACTATCGAC
ACATCATCAGTTCTTTGAAATAAAATAGTATTATTAGTTTTTTTAATGAATTCGTTGCTG
TTATATATTCATGTATATATTACAAGAAGATCAATGGCTAAATCTGTCAGTTTTCTTTTG
CTGCCACTTAGACCCGCAACGGTGTTTCATGATGATGTTTTCTTGTCTGGTGACATTTGG
CCACAGGCTTGAGCACCATAAAATGATCCGGCTGTTCAGACTTACGAGTTCAGATTGATG
TTGGAGTTGGAACTCAGAATATTTGCAATGGCAGTCCCTTGGTGAAGATATCTGCGTATT
GAGAGCTGGATGGCACATCCAGAACACGTACTTCACCGAGAGAGACACGATCACGAACAA
AATGCAGGTCTATCTCAATGTGCTTGGTCTGCTGATGCTGCACGGGGTTGCTCGCAAGAT
ATGAGGCACTGATGTTGTCGCAATAGCACGGGTCGGCGGAACCTGGAGCTCGAACAGAAG
CTGGCGTAACCAGCAGGACTCGGTGACACAATTTGCCACACCCCGATACTCTGCTTCAAC
ACTGGAACGTGAGATGGTGGGTTGGCGCTTGGAGGACCAGGAGACGAGGTATGTGCCGAT
GAAGACAAAGAAACCAGAGGTGGACTTGCGGGTATCCGGACAACCGGCCCAGTCCTCATC
GGTATAGGCGATGAGATCCCTGGTGGAGGATTTGTAAATCTGGAGGTCATAGTGAGATGT
GCCCTCCAAATACGTGAGAATGCACTTCACAAGTGTCAAATGAATGTCGCGAGGGGCCTG
CATGAAGAGACACACTTTCTGAACCGCATAGGTAATGTCGGGGCGAGTGAGAGTGAGGTA
TTGGAGGGCTCTAGTGAGGCTGCGGTAGTAGGTGGGATTAGAGAGGAGCCGGCCGTCGAT
GGAGGACAATATGGAGCTGGTGTCGACCGGTGTAGGAACAGGTTTGCAATTGAGCATGTG
GAATTGTGAGTGACATTGATGCCCAAGAAGTGGTGAAGGGGGCCGATGTGGGACAGCAAG
GTAGGTGAGCTTGCGTTAAGGATGATATCATCAAGTTAAATGAGTAACTATGCAATGGAA
TTACCATGACGGAGGATGAAGAGAGATGTGTCACTCTTGGCGGCCCGAAACCCAAGGGAA
AGGAGGAAAGTCTGAAAGCGAAGGAACCAAGTGTGAGGTGCTTGCTTCAAACCGTAGAGG
GACCTGTGTAGGAGACACCCATGATCCGGCTTGGAAGGATCCACAAAACCGGCAGGTTGA
GAGGAATACACCGTCCCTGTGAGTTCACCATGTAGGAATGCATTCTTTACATCGAGTTGG
TGGATAGGCCATGAGTTGGAGGTGGCAAGGCTTAACACAACCCGAATGGTAGCAGGCTTG
ACGACGGGGCTGAAGGTCTCATCATAGTCGACTCCCTCTTGCTGCTTGAAGCCACGCCCG
ACCCACCGTGCTTTGTAGCGGGCCAAGGAACCGTCTGTGTTGAACTTGTGAAGAAAGATC
CACTTGCCCGTGACAATGTTAGCACCTGCAGGCTTAGGCACCAAAGACCAAGTAAAGTTT
CTCATTAATGCTGTAAACTCATCTAGCATAGCCTGACGCCAATGGGGGTTCTTGAGTGCA
GACTTATATGTGGGAGGCAAGGGTGAGATGGTAGAATAGGCATCGGCAAGGAAGAGGCGT
TTAGTGAGGAGGAACCCTGATTTGGCCCGAGTGCGCATGTGGTGGGGGTTGTGGGGTGGT
GGAGCCGGTATTGCATGTGGGGGAAATCGTTGGGATGGCGTTGTGGGTAGCGCAGAGTCG
GAGGAAGATTCGGTGGGTCCAGTAGTGGAGCTGGCAGGGCTAGTGGGCGGGAGATCCGAG
TATTCGGGGAGTGGGTGTAGACACGGGATTGGTGGTAACGGCAGTCGAGGAGGATATCGT
TGGGGAGCGCGCGACGTGGGAGGAAGCAGGCGACGCGACAGTAGGTGGTTGGGTGCTACA
CACTAGTGGGGACAGGGCCTATNNNNNNNNNNNNTAAGGGGCTTTAGTCCTGGTTCACCA
ACCGGGACTAAAGGNNNNNNNNTAAAGGCCTAACCTTTTCGTCCCGGTCCTCTTACACGC
CGGGACTAAAGGTGCTCCA