Contig Data
morexGenes
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Map Locations of contig_94212 (6075 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_94212

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_81051 1 1171 bp None Available Available LOC_Os12g23770.1, FRAME:-3, EVALUE:7e-59, 13112.m02415 protein retrotransposon protein, putative, LINE subclass
MLOC_81050 2 1669 bp MLOC_81050.1 Available Available LOC_Os06g40210.1, FRAME:+1, EVALUE:8e-21, 13106.m04179 protein expressed protein





CDS Structure of MLOC_81051






CDS Structure of MLOC_81050






Contig Sequence (6075 bp)

>contig_94212 6075 assembly3_WGSMorex_rbca.fasta
TGTTTCCCATGCAATGTTCCCCAATTAGCGCATCATAGCTACTCTGCGCACATGGCGTAA
GATAACACACGGGTCGGGGTGGAGCTCACCATGGCTGATTGAGCCGGCTCGGTGGTGAAG
GCCGGCTGGAGCAGGCTGAAGCAGCTAGCGACCTGGCGCTAGACTGGGCCCGGAGGAGCT
AGCCAAATGGGCCGGTCGGCGGCGCTCGGCGGCGATGGCTACGGTCGGCAAAATCATGGC
AGCGACCGACAGCGCCGCACCTGCCGGCGGCGGGGCACTGGTGGCCGACGGCGAAGGGAC
ACTGCGGCTGGGGTACATGTGGAGGGAGAGAGAGAGAGATCTCGTGAGCACAAGAGAGAG
GAAGAGGGAGAGGAGCGGGACAGCTGGTCGTCGGCAACGGATTCTCCGACGGGGTCGGGC
TCCGATGACCGGCGAGGCACCAGCAACGGACGGAGGCGCTCTAGATCGGGAGCTCTCTCT
CAATCTGGAGCTCCGGCGGCGGTGGTTACTGGTTAGGGCTCCGGATGGGCTCGGGTGGGC
CTGGTGTGAGGTGGGAGAGGCACAGGCGTGTGGTTGGCGGCTGAGGGTTAGCTCGGCATG
GAAATCGAGGGGGATTAGGGTTGGCTTAGGTGGTCAGACGGGCTGTGTTAAGGAAGATAG
GCGGGGAAGAGAGGGGAGATTGCGACACGGCACGAGATTTTAAACACCGAAAAATGTCCA
ACGATAATCCGATGACGGTGCCGTTACCATCAACCGTTCGGGTATCAAACGGACTTTGAT
TGTGACGAGAATTAACACGCTGCCTACCTACACTATATTAAGACCGCATGCCAACTTTCA
ACCCAATCGGAGAATATTTTATACACACTTTTNAAACAATATTTTAATGATGCCGCGGGT
GCGTGCGAGTGTGGTTGGTCTCAAACGGTCAACGCAAGAACGGAGAGAACCGACAACTAN
NNNNGGATGCAAGTTTTGAAAACTGGTAGCAACGGAGTGTCGATGCAATGCGNNNNNNNN
NNNNNNNNNGATGATGAATGCAACAAACAAATAATAACACGACAACAGCGAAATAAAAGT
GGAATCTTCTGAAGCGTCGGTCTCGGGCTGTTACAGGCAATGCGCGGGGCGGCTGAGTGA
TGTAGACGCGTCCGGTAGAGTGGCGACGCGCGAGGCTGTCAAGTGATGTACATGCATCCG
AGGGAGTGGCGACGCACGTGGCGACCAAGTGATGTAGACGCATCCTACGGAGTGACGACG
CGTCGGGCGACGTTCGAGGGACTTAATACCACATTTCAAGTGTACTCCCTCCGTTTCAGT
TTATAAGTCCGGCACGTGTATCTAGGTCGTCAATTTGACCAATTTAATGAGAGACATATA
TTACAAAAAATATATCATTAGAAACTTTAGATGTTCTATTTTCTAATCATATAATTTTAT
GTTAAATAATATATTTTATATAAGTCAAATTGACGACCTAGATACACGTGCATGCCTTAT
AAACTATAACGAAGAGAGTAGTTAGGACCGTCGTTACATGTAACTCCAACAACAATAATG
GCGTTCGTTACTAGTAACTGTCCTAGTTACTCTCCTTCATCTCCCTTGAAACGGCTCATT
AATAGGGCTGGAGACACTATATAAGCCACCGCTAAGCTCCGTGACAATGGTTCAATATCT
TGTTATAATTACACATCCTAGAGAAAACATAAAATCTTCGGGCACGAGACGTAGGGTTTT
TACCTTTTCAAGAATTATCCGGAGTCGCTAAATACGAGCGATGCGCTTGCGCCATAGTTA
GGTTCCACGCCTCGTTCGTACCCTGGTATTTATTATGAGGATCGTTGTCTTGACAATATT
CTTTTTAAATTTAAGATGAATACGAGGAATGCAGATTAGTCCGGGCGTTGGGTTTTTGCG
ATGGTTTTTTTTACAGGGATCCGAGTGTAGATGATGTAACTCGAGCTGCTGCAAGGCCAC
CGTCACTCCGCCCGGGAAGAGGCAAAGAAATCCCGTGGATATTCCAACAGCCAGCCACTA
GCGCATTCTTAACAGGCCGTCGTTAGCTCCAAAGCGTGGGCTCTTTTGGCGTCCCCGTCG
ACGTACGTACGTCACCCCCGGCACGTACGTACTCACGCTCAAGTTGCGCTCCCTGGAAGC
AACGCAACGCAACGCAGAAGCCACCGCACGCGACAGCGCTCTCCGGCAGCAACAAGGGCC
GGAACCAAGGACCGGATTGATTGAATGGATATACTAATTGTCGGATGACGCTGGGTGGTT
AGGCCATTGCCGTGGATTGGAGAGGAATATGCGCGCGGATTCTGCCCTTGGATAGGATCG
GGATAGGTGGGGTGGGGTGGGGTGGGGTGGGGTCGGGGCTGCTGCATGCGCCCGACGCAC
CCGGCCGACGGTGTCGCGCGTCGTGTGGAGAGTTCTCAGGCGTGTGGCCTCTGGTCTTCT
CTCTACAAGCCTACGATAATCGAGTGAGCTCGATCGAGCAGTTCACGAGCGTTGGGAACC
TTTTGGTCGAATTGAGGATGGCATGCGTCACAGAATTTGCACAGTTCATATCCATCCGTG
CGTAAGCAGATCAGACGGCGGTGATCACGAGCATATGGCCTTCCTTCGCCAAAAGCAGGC
ATTAATTTTGTAGCAGTAATAATTTTGTAATGTCACAGCAACTACGAAATGACCGTTCGG
CCCCCACACCAATGATTCCAGGCCCATCTCCAACATCTTTGATCTTTCCAGGTAACTTGT
GCCAGTCGATAAACCGACCTGTCCAACTAAACAAACGTGACCACCGCGACGGACCCAACG
GCCACCGAGGTCGCCCACAGCCGCCGCGCACGCTATATTATAGCCGGAGCAGCGTGCGCG
CCTACGAGCACTGCACGGTCCCCCTCTCCCTCAGGTTCAACAACCACGAGCCACGATAGT
CGCCGTCGTCGGGCCTCTGCTCTCCGTCTCCTCCCCACTGCGGCCGGACACCCCCGGGAG
CCCGTGATCTGCGCTGCACTGTGCCATGTCGTCGTCATCCTCCTCCTCGGGCGGGGCGGG
ATCCGCGCTGGGCGGCTCCCACGCCGGCCTCGCCCTCGCCGCCACCGCCATGGCGCTATC
CGGCACCCTCGTCCTCTTCTCGCTCTGCCGCGCCAAGCAGACGGACCACCACCTCGTCTC
CTCCGACGCCGCCGTCACGTCCCCGTCTCCCGCTCGACTCCGGCCCTGCCTCTCCTCCTC
CGGTGAGTGTGACACCTCCTCCACAGCCGTGCCGTTCGTTGCTCCATTCGTCCGCACAGC
ACAGTTCTTGGTTCTTACGTACGATGTCCCCTGTTTCTTTCTTTGTGCGTGCAGAGAAGC
GGAAGCGGGAGAAGGCGAGGCGCGGGAGCATGAAGCGGGTGCGCTTCGCGGCCGACGTCG
TCGACCACGGCCCAGCTCGCCCGGCGCCGGAGGAGGAGACGGCGGCGCCCGAGCCGTCCT
GCAGGGGCGCCGCGATGCCGGCGAACCGGGAGGCGCTCTACCGCGGCATGCTCCGCGGCC
GCTCCATGCTCAGGACCGCCTGCTCCTACTAAGCTACCGGCGTCAGTTAACCCCGTCGTT
TAATCCTTACTACACCCATCCCGTCCCCGTCTTAGTCCGTCGGAAGCTGCCAGCGCCTTT
CGCAATTCTCGTTCATTAGCGTCGTCGCTGATTGGGAGATTTTTGTAATTAGTGAGCATC
CCGTACGCGCGAGCGATCTGTGTGGTGCTTGTCCTTAATTGTTCTACCCGTTGTCGTACG
TGTGCGTACTATTTCTACTTGGGTATAAGTAGCCAATTGATCCCAGAACAAGGGGTCCTT
GCATTCTTCATCTACCTGACCCAGTGAAAGCTGCCTTTGATCCTGTTCTTCATTTTATTT
TATTCTTCTGGGGTTCCATGCTTGATTTGATCTGCCCCTCTGGGCGAGCAGCTCAAGACA
AGGCGATTTCGGCTGCCAATTTTGTGTTGCTGGATTTGGTTCTTTGGGATGTCGTCATAC
CAGCGGCTGTGGTCGGGCGTTGCTGTCGTGGTTGTGCAAGCAACGGAAGAAACACAAGGT
TCAGGTTCGTCTCCTCCTCCAACCCCAACTCCAAGTGGCGCCGCAGATGCGGCCTACTGC
TGCTGGTGGCTTTCAATTTTCCGCCGGATTCTTCTCTTTTTCTTGCCTGGATTTTGAATC
GTCTTGGGAGATATGGTCATGTCACGGCTGTGAAAGCTCGGTGTCTTTCCGGGAAGGGCG
GTGTCCATCTCGGTCTCCGGCAGTGACAGATGAAGGGAGATAGGGTGGTGGATAAGAAAC
GCTGCGGGCTCGACTGACCGGGATCACATGCGCCCAACTGAACGAGCGGCGGAGCAGCGC
CGCGCCCGCGCAGGGCAGCTCGGCCCGTGACTACTGACCACGGCCACGGGCGTCTCCAGG
CTTCGCGGACCCGGGTGGGAAAAGCTCTGCCTGACCTGGCGTCGCCTGCCGTATGGCCGT
CTGGCCGGCGTGTGTCAGACTGTCAGTGGCGGTTAAGGTGAAGGGCAGTTGCTAACCATT
TAGGGCTTGTTCGGTTCTTGGAGATTTGAAGGGGTTGGGAAGGGATTAAATCTCCTACAA
GTCAAATTCTACCTTAATCCTCTTCAATCCCCTCCTGGCTGGGATTAACCGAACAAGGCC
TTATGGGTATTTGAATCATAAAAAAGAAAGCCGGATACTCACGATGGGAATGGACCGGGT
CGGCCGGTCGGGTCACTGACCTCGCCAAAAAAATCAAGGCCAATGAGTTGTGTGGGTCGA
TCTCGGACCATAGTTAGGATCAGTGGAGTCGGCACCGACTGATCCCTAGTAATCTATCAG
TCGTGAATCATGAGTTATTCATGGCCAACCACGTAAATAATTTGCAGGTTGACAGGGCAC
GTGATTTCCAGATTTGTGTGGCGCCAGCGGCCTTCATCCTGCCAGCGGAGAACGCCCGGT
AGGCCGACCTTGCAGAGAAGGAACCGTTCACCTCCCAGATCCATACTATCTTGTCTTCAC
CTCCTTCCGTTAGGTCAATGCCTTGCAGTCGGTCCACTAGAGCCAGGAACTCCATCAGCG
CTTGTGCATTCATGTTAGATGAGACCTCGTGTCTCCACCCAACTAGGAGAGTGTGTCATA
TAGTGCAGTCAGCCAGCGCTTTCTTCTTGATAGCCAGGAATAGGGTGGGCATTAAGTCCT
GAATTCTCCCCTCCTCTAACCACAAATCCATCGAAAATCTAGCGGTAGTACCATCTCCCA
GCCTACACTTCGTAGCCGCCTTATATATGGCCATCGATTGCGGTGATACCTCGAGATTGA
ACTCCTTCCACGACCTACCATTGTTTGTTCTGGTGAGCCATGTCCATCAGGCTCACGGTG
CCAAGTTGAACAGCCGCAAGTTGGGCACACCGAGTCCGCCCATCTCATTTGGGGAGCACA
CCTTGTCCCAAGCCACAATGCAATGCCCAACACTCACATCACGGCGCCCCTTCCACAAGA
AACCTCTGCATATCTTGGTCACCACCTCTAGCGTCTTTATTGGCAAGTCAAGAGCGATCA
TTGCATGGATGGGCGTTGTTGCGACTGTGGTCTTCAACAGTTCCAGCCTCCCAGGGCGAT
ATAGTAGTCTCACCTGCCATGCCGGTAATCGATCTGCCATTTTATCAACCACAAATTGCA
AATGGGCTGTTGCGACTTTTCTCAGCCCAAGCGGGAGGCCCAGGTAGCGACATGGCCAAC
CCATCACTTGACACCCCAATTCCTTGAAAATTAGCCGCACTTGCTCGGTCAAGCATCTGA
TCGGGTGCGCCGAGCACTTGGCGAGGTAAGTGTCGTGGGAACGATTCCGATAATAGAGAG
GGGTAGGATAAAGGAGCATGATCTATCGATATGCAAATCGGTGACATAGTGATTTTAGTG
AGTTCGGACTTCTCACAGTAGAGATAACAACCATATGTCTCGTAGTCCAGGGAGGCTTTG
CTTATCTGTCATGAAGATGGAGTTACATGGTATATTTGAGAGGGGGGGGGGGGAGAAGGG
ATCTACATGCCTGAG