morexGenes - Barley RNA-seq Database

Contig contig_93185
Source Contig contig_93185
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_93185 (5763 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_93185

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_80856	1	559 bp	MLOC_80856.1	Available	Available	None
MLOC_80855	1	2042 bp	AK363786	Available	Available	None
CDS Structure of MLOC_80856

CDS Structure of MLOC_80855

Contig Sequence (5763 bp)

>contig_93185 5763 assembly3_WGSMorex_rbca.fasta
AGACGACAAAAGGATTTCTGTCGCCGTAGCAGTGTGCGCTGGAGACGGCGTGGGAGAGGG
ATGGAGCGGAGGGACTGGGGGTGGCGCGACGAGGGTTCGCCTTTTCTGCTCACGGGAGTG
GGTCGGGCCAGCTCGGAGCCTTCAGTTGTATCGTTCGCTGCTAGTTTGGCCTTTAACATC
TTGCTTCTTCCAATGGAAGGCTTTCGCCCTGCGTTAGAGCAACTCCAATGGGGTGACCCA
TATTGTCCGTTTGGGTCATCCAAAAGAAAAATTGACCCGACCGGGCGACCCAAACGGACG
CGTTTGTCCGCCTGATGTCCGCTTGTTGTCCATCCCAACCCAAACTAGGCGCAAAACTGG
GCCACAAATGGGTCCGTGACAGACAAAACTGGGTGCTCCCGTCGTCCGCTCTTCCCCTCT
TGTGTCCACCCTTGTCCCACCTATCAGCGGTCCGTCCCTCCTCAAGGCCGCTGCCTGTGG
AAGTGGCCGATGACCCACCGCGAGTGCTGACGTTTCCCATCTCGACGCGAAACCTCCTGG
AGCGATCCCTGCTCCTCGCGGCAGCAGGCTCCGGTGTCGGCAGCGGCTGTTCGGTGGCGA
GGAGGGTCGCGATGGAGGGGTGCGGGGCGCGACGATGGCGGGATAGAGCGGGATGGTCGG
GGTGGTCCGGAGCCAGGCGGCGACACACGCGGCGTGGAACGCGTGGCGGCATGCCGGGAG
CAACCGCAGCTTGGTCTTCGACCTAAATGCGAGAGGCAGACGACGCAGTCCGGGGAGCTC
CTAGGCAGCGCCGCCAGCGCAGAAGGTATGGTGAACCGGGGCAGTGACTCGATCCGATCC
TTCTTACCCTCGTCCTTCCCGTGCGGCCCGGGCAACGGCGAGGGTGGGGGAGACGGGCGC
GAGCGGCTGAAGCGGTCGCGGAGGCAGGCGCTGATGGAGAGGGAGGCGACGACGACGAAG
GCAAAGAGCCCGAGGATGATGGGGATGCAGTAGAGCATGGAGGTGCCGATGTTGTCGGCG
TGCCTCGACGGAGGAGCCGATGGGACAAGGACGCGAAGACCGCCCTGAGGAACAACGCTG
GCGGGTCGGCGGTGGCGAGGTCGTGCGCTAGGCGGCGCGGGGAGCGAAGGAAAGATGCGT
CTTCCACGCCAGCAGCCTCACTTGTCCGCTTTTTTGCATCTCGTGCATTGGGTTCGCCCA
TCGATCACCCGTGTTCACCTCATGTCCGCTAGGCGGATGGACAACCCAAACAGACAAAAT
TCATGTCCGTGTGGATCGTTTCGTTCAAGTTGCTCTTCTCTCCCTAATAATAAAGCACCG
GTGGCTTCTGTCGTCCGTCGTGGCATTTTTGCAGAAAGACCCCTATAGTTTCCTCTAATT
AACCTGCAGTCCGTTTATAAGTGAGGCCGAACCGTTTTGTTTCACATTTTACACAAAACC
CCCTTACTTTCGTGCTAAATAACCCGCGGTCCAAATTGTACTCAGAGCGAATCATTTTTT
TTTACCTAAACCCCTCACATATGCGTTAATAACCTCGAAGTTCATTCAGAATAAATATGT
ATTTTCAAATAACAATATCTTTTAAACCGTAAATTCAATTTAAACGTGTTATATATGAAA
CTTGATTAGAAAAATGTGTAGAGTTTGAATATGTTGTTATTTTACATGTTAAATATTTTT
ACAAATACTATATAGGATACAATGCTAATTAATATTTGTCTTTATTTCGTACCGACTATT
TATATTGTAACATGTTAACTTAAGCATCAATATTTGGAAAATGTTATAATTTTTGGACAT
GATGTACTTGCACTCGGTTCTTTTTTGTACATATTTTATAATCTAAGACCTTACGTGCGC
ACCTTTTTTTATAGTATCCACGCGCGTTTTTACCAATGAACTATACTTTTTTATTATTCA
TTTTTCTCCTGTTGCAACGCACGTGTGTAATTGTGCTAGTAGAAAGAAAAAAAGGGAAGC
GTTACTCCTCCTTTGGCTCCAGCTGTACACAAACTCACGCGTGTTGGCACATCGGTACGT
AGGAAAACCCGTGACGCTCGCCGGTACATGCCCACATTCATGCTCTCGGTCGGCCGGTCC
GAACATACATACATCTCTTCCCGCGGCCGAAAATGGAAGTAACAATAATCCCACCATAGA
AATAAGGTGGGGGAGGTGGCTCAACAACACTGCGGGTCGGGCCCGGCCCAGCCCGGTCTG
GTCAACGGTCCACCACGTCCTACGTCGTGCCTGCCAGTCTCTCCACACGACGACGGCCGG
CCGGCTAATCCCAGGGGCCAGTCTGCTAATCATCCTCCATTTTGCTGCAATAATCCCTCA
CTTATGAGTTGCCAAGGAGAGAGCATTCCGATTCTTTATTACCACCCTCGTTTAATCATC
AGCGAGCAGAGCAGAGCAGCTGAGGCCCATCCAGATCCAGCTCGGCACGAGAAAGTTTCA
AAGCATCTCTCCTCTCTCCTCTCTCTCTCTCCGTCTCGAGAAGAGTCTTCCTCCTTGGGA
GGAGGCAGGCAGGCAGCAAGCAAAGCCCAGCAAGCAAGCAAGGGAGCTGACTCCGTGCCG
CCTGCTGCCCCAGATCTAGCCGGGGTCGGGGGAGGGCGCGCTGGGGTCGGCGTCGGAGAT
GAAGGCCTCGCTGCGGAGCCGGCAGGAGCCGCGGCGGGTCAGCAACGGCGTCATCATCGC
CGCCATGCTCCTCTCCCTCTGCGTCCTCAGCATCGTCAAGGCCAGATACTGCTCCACCCC
CTTCGGTATGTCTACTATCTTCTTCTTCTTCTTCCTCCTCCTCTTTCCCCTTCTGTTTGC
TGTCGAGCTTGCTGGTTCTTGGATGGACGGGTGGATGAGAGCTTGGATGTCTGCAGGCAA
GCCGGACGACCAGCTCAAGGAGCAGATGAACTCCAGCATCCGGATGGAGACCGACGACGA
CGAGCCGGCCCCCGCCGCCACCACGGTCGGAGGTAAGCAAGCTGTCTTCCGGATCGATTG
ACTTGTTCGGCTCAGCTAGCTAGAACCGGCCGATTGCTGATTTGGGGACGAAATGTATGT
TGCTCAAGACTGTTTCTTTTTCCCTGGCCAGTTTCAGAGGAGGACGCGGAGGAGGATGTG
GAGGAGGACAGCGCCGCCCCGGTGCCCAAGGTCACCACGGAGAGGGCGGAGAAGACTGCC
GTCGTCTCCGGCGCCGGCGCGGGGAGGAAGGATAAGGATAAGGGGAAGGGGAAGAAGAAG
AAGCCGACCTGCTTCATGACGAGCAAGCGTTCGGAGCGGTGCGAGGCGGCGGGGGACATC
CGGGTGGTCGGCAACGCCTCCACCATCTACATCGACTCGCTGGACAGGGAATGGAGGACC
AAGCCGTACGCGCGGTACCACGACCCCGTCGCCATGACCCACGTCCGGGAGTTCGTACTC
AAGCCCTTCCCCGCCGACGCCCCGCCGCCGGCGTGCACCAAGAACCACTCCGTCCCCGGG
TTCGTGTTCTCCAACCGCGGCTTCTCCGGCAACCTGTACCACGACTACACGGACGTGCTG
GTGCCGCTCTTCCTCAGCACCCGCAAGTTCAAGGGCGAGGTGCAGTTCCTGCTCAGCGAC
CTCAAGCCGTGGTGGGTGGCCAAGTTCCGGCCGCTGTTCCGGCAGCTCAGCAACTACGAA
GTCGTCGACGTCAACAACGACCTGGAGGTGCACTGCGTGCCCCGCATCGTCGTCGGCTCC
GACTTCCACAAGGACATGGGCATCATCCCGTCCAAGGCCGCCGGCCACGTCTCCATCGTC
GACTTCAAGCGCACCCTCCGCGACGCCTTCGGGCTGGAGCGCGCGGCCGCGTCCCGCGGC
GGCGCCACGGGCGCCGGTAAGCCCCGGCTCCTCATCATCTCCCGCAAGAACTCGCGCCGG
TTCCTCAACGAGCGGGAGATGGCGGCCGCCGCCACCGCCATGGGCTTCGACGTGCGCATC
GCGGAGCCCGACCAGCACACCGACATGTCCACCTTCGCGCGGCTGGTGAACTCCGCGGAC
GTGATGGTGGGCGTGCACGGCGCGGGGCTGACCAACATGGTGTTCCTCCCCGCGGGGGCC
GTGCTGATCCAGGTGGTGCCGTTCGGAGGGCTGGAGTGGCTCACCGGCGTGACCTTCAAG
AACCCGGCGGCGGACATGGAGGTGACGTACATGGACTACAACGTGCAGCTGGAGGAGAGC
TCGCTGCTGGAGCAGTACCCGCGGAACCACCAGGTGCTCACCGACCCCTACGCCGTGCAC
AAGCAGGGGTGGGACGCGCTCAAGGCGGCGTACCTGGACAAGCAGAACGTCCGGCTGGAT
CTGGACAAGTTCAGGGCCACGCTCCGGGACGCGCTCAGCCGGCTGCCGCCGGCGGCCTGA
GCCTGCCCTGCTCGACCACGCCCGTCCCTGATTCGGTAGATATAGGTCCGTGTATATCTA
TCTGCTCTGCTCTGCTCCGTGCCTGCCTCGTTTTGCTTGACTTGATTCTTGATTTCTTCT
TCTTCTTCCTCCTCTTCCTCTTGCTCTTCTTGTGGTAAGATCCCATTGACGGCGAGCAAG
AACATGTGGTTACACAACATGTTGCTTCATACCCTTTTGTGATTATTTGTTTCTTATATC
TATTAATTAATTTACAAGAAAGATGCCAAGAACATATGGCAGTCGGCCTTCTTCTCCGTT
TTGTCGATCCATGAATCCATGCCAAGAACATATCGCAGCTATTTCCTCCCTTGGTCCAAC
TCCATTGGCAATGGCATGTCAGAATCCATGGATTTGCACCGGAGAAATTTCTTGGTCATG
GGGGGAGAGGAGGAGGCGCCTGCGACTTGGCCAGCTCCTGCTCCGTGTCAGCTAGTAGCC
GATTGATAGGATTGTCTGGATCGTCGTCAGCTGCCGCGAAGCCGTGGATCGATTTCGTCA
GCTGATCGATGTGTTGGTTGATTGTTCGGCCAGCGGAATGGAGGAAAGGAGAAAAGAAAT
CAAAGTTTGGCTGGTTCGTGGGCGCGTCGCTGTCGCCGAACTGGGGGGCTGCCAACTCCG
AGCTACCTCCGGCCCCTGCCAGCCAGCGTCATCCCATCTCGTTGTGACATCGTGTGAGGC
GCACGGGCTGCCCGAAGCTTCGGTTGCCTTCTTCTCTTGGCCTTTCCAGGGGAAGAAATG
TCAGCAGCCGCCGTGTCGCCGTCCCAGCTAATTATTTTTCTTCCACGCTTCGCCGTCTGG
TTAAAAGGCAGGCTTATTCAACGAGGCCTTTTTGACTGTGGAACTATTCAACGCGCATCT
TCACGGCCGGACCACTAATTTTTGTGCACGAGAGGGAAATTTGTTGCCTAGATTAAAAAT
TAATTATTTTTTCTAAACACATACATACCCTCGCAAAACGTGCTCACGCACACCCTATCC
TACAGAGGACAAATTCAGCACGATGTGGCCCTGGTTTGTAAAAATGTAGGTATCTCGGCC
CTTCTCCTATCACCAGGTAGATGACGGTAGGATATAACAACCTATCGCCTAGCCTCTGAC
GATAGACCACTTATCCACATCAGCACAACCTAACGGCCTTCAGCCTCCGCCGTCGACCCT
ATCGTCAAGGCCCGCCGCCGACCCTACCGTCAAGGCCATTGGAGGTAAGTTGTTATACGT
ACCGTTGGAGTCTGTCGTGGGTATAAGCCTGACNNNNNNNNNNNNNNNNNNNNNNNNNNT
GGGCAGAGTCCCAGCTACGGCGAGCATGTATTAGTTCGGGCCCCTCTGCGGTGGAGGCAA
TAG