Map Locations of contig_93135 (10370 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_93135

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_80844 2 1332 bp MLOC_80844.1 Available Available LOC_Os04g46350.1, FRAME:-1, EVALUE:3e-91, 13104.m04661 protein homeobox associated leucine zipper, putative, expressed





CDS Structure of MLOC_80844






Contig Sequence (10370 bp)

>contig_93135 10370 assembly3_WGSMorex_rbca.fasta
GAGACCCCCCGAAATGAGCCGAAACACCTTAGGAAGTGGCAGGGCTCGCGACTCAAAATC
TCAAATGCAAATGGGTTGCGGAAGAAATGGCGGTGGTTGCGGAAGCTAACTAGTCTGCTT
TGGCCAGAAGGTCTGGGAGGGACGGAGGTTCTGGGGCCTGAAGGTCTGGGGTTGCAGGAC
GGACCGGTGGTCGGAAGTTCCAGGGGTCGGGAAACAGGGGATGAACCCTAATTTTCAGAT
CTGACAATTGGGCGGAAAAATTGGTAGAAAACCCAAATCACGTGGTAAAAAAGAAAAAAT
GGTAAAATTGGTTGGATGGGGAGCTAGATCCACTTGTCCACAACGAAATACACTGATCCA
AATCAACAAATTCTCTTCAAATCCAACGAATCCAAGAAATTTTGGTATGGCTATTTTTGT
CGGGAGTTTTTGAAATTAGGTCAAAACAAAACAAAATTGGCTAGAAAGTGGGGGTGAGAC
TCCAAAGTGTGAATCAACGTGGCTCACGATACCAACATGATACAGGGCACACCCGCAATG
GTCGATCTTTTTACACTTGGAGGGGGGGGGGAGAAAAACCAAGAGAAACACACGAATTCA
AGAACGATCTCCAATCACACATCCACTAGATCCACTCAAACACAAGCGGTACATAGATCC
AAATACAGCAAAAGGATACACGTAACCGATAGTCTTCCCTACGAGAGGGGCCTTGTATCC
ACGAGGGGATCTTCCCTATAAGATGGGCCTTGGCATCACTATGGATCTTCTCACATGGAG
GACATCTCCATGCGAGGAGTATAGTAGATGGAGCTAAGCTGAAAAGAGTTTGTCAAAATA
TTAGCTAAACCTAAATTGGAGGTAGGAGAAGAGTATTTATAGTCTAGGGCGGAATAGGGG
CCGAAGGGGTACCTGGGCACTCAGATCCGAGTGGCTACGCGCAGGTAGGCCGGAAGTTCT
GGGGGTCGGACGTTCCCGGCATGTTCCAGGATGGTTCCGGGCTTTCCAGAGTGTTGTCGC
AGTTCGGGGTGTTGGGGCTGGGAAGGGGCCGGAAGTTCCGGGTCCTGGAAGTTTGAGGCC
AGTTCCGGGCTTGACACAAAGTTGTCGCAGTTCGTGGTGCCGGAGCTGAACAGGGGCCGG
AAGTTCCGGGCGCCGAACGTTTTGGGGCTTGGGAGCTGACTTGTCCTTCCTTTGGTCCTC
TCGCTCATTCGTCTTCGAGTCCATTTTCATAGTGGCTTGGCCTTCACTCCTAGCCTCTTG
GGGGCCATGCTCATGGTACCTAAGCATGCACATAGTTTTCGCTTGAGGTAGCACCCACGT
TCCAATTGCATCAAAGAAATAGTCGATAAGGAGAGATGTCACCTCCGTCTCAATGGCACG
TGCACGGGCTCTTGTCGTGGAACCACTTGAGCCTTGAGATGTTGGTGATGTATCCATGGA
GATGATCATGTGATGCTCCGTATCATCAGTGCCCTGCGTCGTCTGGTGCTTGTGGCGGTT
AGGGTTGTGTGTGATGGAAGGAGGAGGTGTCAAGCCAAGGGTGGGATTGGTGTTTACGAA
TATGTACATGGACATAATTCACCTAGCGGGGCCACGGGCAGGCCCGGCCCTGAGGGGGGG
GGGGCGAACGGGGAGGGCGCCCCGGCCCCGCAACACCGAGGGCCCCCGGATGTGATCTTT
CTTCCGTACTAGGCCTAGCAAGAAGCACACATCACGGACACATCACGGATGGCTGTTTTG
GATCCCACGATCTCTACGGTAGCCCATTGCATATCCTAAATCATACTGTGATCTCCGCAT
GCGACCATGCAGATTGATTGCACCATCTTCAAAATTTTCCATCTGCTGCTGCTACGTTCC
TGGTGTTGTGCCAGATGCGTGTTGGTTGTTGTAGTCAGGTTCATCTTGTTGCTGCGGCGG
CGACTCCAGCGCTCCCTCCGGCGATCCGGTATAGTACTCCATGTTGTAGGTCTCCAACGA
TCTCGTCGCGCTCGTCAACTACCTCGGCCAGAAGCAGTTTTTCCTGGTTGTGCACGACTA
GTGTGTGATGATAGCTTAGACGTTAGATGGACATGGTGAAAGCGCTGGTCGCCTTGTGCA
TGCCCTTAAGTCCTCCGAGCGTGACAAAAAAGCTCGTGGATCAATGGATGGCTTGAGAGT
TCAGTATGCTGGTATAAGGGAAAGTAACGCATGTGGTGCATCCAGGTATATATATATTAC
TCTTAAGCAAAGTTTCATAGTACTCCTTTGTAAACTAATATAAGATTGTTTAGATTATTA
AAGTAGTGTACTAAATGCTTTTATATTAGTTTACGAAGGGAGTATATATATGCTTTGTGT
CTTTTGGTGGGGTTATTAAATTGCCTAATGAAAGATAGTGCTCGTGTGTTCATGCAATGT
GAAATTGCTTTGAATTTATTTTTGAGAAGTCATCAACAATTTTATTGCTTTGAATTCATT
GTAAAAATATAGCCCAACACGCTATAAAATAAAATCTTTGTATAGATGTTAACTTTACTG
GATTAATTAGGACCATAATAAAGTAAGAAAAGAAAGATTAATGTTGTAAACGAGTGCAGA
TGGATTTACGGATCAGTGAAAGATAGTGTCCAAAGAATTCTCATCGAAAACATTAGTGAT
TTCTACTAATATATTCTTTGAATATTATGTTGAACAAGAAAAAAAAACTTAAAACTTGCA
CAAAGTTCATTCCAAGGGAAGCTTTTCAACATTGAAAAATATTATTTTGATGTTCATATT
TAGAGGCCTCAGGTTGTCGTTTTGTCCCGGGCCCCCGAAATCTCAGGACCGCCCTGGCCA
TGGGGGCAATCTTCCCATTATTTCTCCAAACTTTAGCTCCTTTGATTCCGAAGAGATTCA
AATGACCAGCTTCCCCAACTCCTATGAAATTGCACCACACTGGCAACAAACTTCTTATTC
TCGAATCCGTGGAGTTAGGCCATTCCGCGACGGCGGAGTTGGAGCCTTGGAGGAAATGGC
AGCGGGAGAGCTACCAGGCCTAAGTTTTTTTTAGAAGACCGAACAGGGCCTAAGTGGTGG
ACGTGTTTTTTTTCCGGGCGTCATAGGCTAGAACGGTTAGGCATGTTTATGTTTTTTGTT
TATTTCCTCTTTCCTTGCAAAAAATGTTTGTTTCAAAAAAAGGAAAGTCTAGGCATGTCA
GTGGTCGGAAACAACTGCTAGTCTTCATTGATGGATGCGGAGCCGCCACGCTAGACTCAT
CAGTGTGATAACCAATCAGGGAATGTTGTTTTCCCAGTAGTGGGAAACTGAGTAAGCCGC
CACACTGATCTCATGTGTGGATATCTGGCATGCTTTAAAAAAAGTTCAATGATGGAATAA
GGCATATTGTGGAATAAAAAGAAGAAATAGATTCTATGTTGATTAAGTATTGACACTGCC
AGAATTTGAGGTACTACAATATCGCTACTACTGTACCAAATTACCCAATTTGAGCTATAT
ATCAACACGCAATGTTAATTAGTTCTCAAGTTTTACCAAATTCATATAACCTCTTCGCCC
AGCGCCACAATAGCACAATAAACCATCATACAACATTTTTTTTTCTCCCGAAGTAGCATT
CAGTTGGTGTTTGATTATTACTGTGTGATATATTTGGGGGGTTGCATCCAGCAGGTACAG
CACGACCAACCACGTGAGGACATTCTCACATGCGAATCATTGTGCTAGCACATCTCCTAG
AAGGCGGAGCGGAGCCAATGAGTAGCAACACACGGCAGGGAATAAGATTACTACTCCTAC
TACCCTAAGCTTAGCATGCACCACAGAGAGGAACCCCTCAGCTTTTGCTCCACAAGTTAC
GGGTGGGCGGCCGCGTGAGCTCCCAAAGACTGTCCCTGATTGATCATCACATCCTATCTA
TGGCTGCCCTGCTTGCACCCGTCTGCATATTCCTGCAGCAGGTGGTGCACTGCAAACCTG
GATGGAACCTGCTGAGAGCCTCAGGCTATATGCGGCAGCATGTACCAACTCAAGTGGACG
CTGACGATGCCGATGGAAAGGAGGAACTGCATTGTTTCGGCATGTGCAGAATATTCATAC
ATTTTTGGAGACAAGCCCCCCCTATGTTCGAGTCGTTCTGTCGGCACTTCTGACCGGTTG
GACACATGGGAAGAATAAAGTGGCGAAAATTACCCGAGGAAGATGACACCGACTGATGCT
ATTGAAACCTTTAGAAAGACTTATATTTAGAAACGAAGGAAGTAGAAGATGGAGATAGGA
TGGAAAGCAGTTTATGATGCATACAAAGTGTCGTCGAAGAACGCGGTTTTCGGGTAGAAA
CTTTGGATATATGTAGATATATTCATCCGCCTAGAAAAATTTCTTGTGTGGGGTTTTATG
GCGTCGTGGCCAGACCCTGAGAGCAACCCGAAACAAACACCACCTCGAATAAGTGAGGCG
CCATTTCCATCAGCGTGGATCTGAACTGACATGCACATCTAGTCATCCATGAATAGTATT
CATGATCCCGGATCAGTTGCGTCCGTGTGGCAGTTTGATTGTCCAGTCCACGATCGATCG
AATGGTCGGTGGCCGTCCGTGTTTAGTTGTCTATATCCAAAACCCAAATGATAAGCGGAT
AACCGAACCACTTAAAATTAGGTATTTATAGGTACATACGTGAGCAAAAAAAAAAAAAAC
TATGGAAGAACACTTGCATAGATTAATAGATATATATGCATGCTTTCTGGAGACACTAAT
CGCATAAATTAAGCTAAGTAGACCGGCCAGAAGCACACACACACGCGTTAATCAATCGCT
GGAATTAAGCTTGAGGGACACGGCTGTCCAACAAAACGAACTGAACTGACCTCTCATCAT
CGCCGTCATCATCAGCCAAGCGACAGGACAAACCGCCGTGCCATCCCCTTGCACCCCACC
TTCCCTACACCCGTATCCCACCATATCCAGCTTTCTCTAGGACCAGCTAAATATTCCCTA
AGCTACTGCATGCTCTTCTACAACACTTGTCACACATTAATACTCGTGTTCCTTCCTGAG
AAAGAAAAAATTCAGAACGATCGAGAGCAACAGTTTTGCGCGAATAAATGTGCGAAACTG
TTAGTTTTGATATGGTGTACTGCCTACTGTCTAGTAAGTAGACTGTCTAGTGGCTAGGTT
GTCGATGGGTCGATCATGACTACTGCGGCCGGACGGCGATGGGGCGGTGGCAGATTGCGC
CGTCGACGACGTTGCGGCGGTCGCCGGTGAAGTTGTTGTTGTTGTTGTTGTTGTTGGAGA
CGCGCTCGCAGGAGGGGCACATGGTGAGGGTGGTGGGCGGGGACATGTGCATGTACTGAT
GCGGGGAGACGAGCTTGAGCGCGCGGAGCTCCTGCACCTCCTTCTGCAGCCGCCGGTTCT
CCTCCGTCAGCGTCTCGCAGCAGCGCTTCAGGAACTCGCAGTCCACCTCCGTCTGCTTCA
GCTTCGTTCTAGATTAAAAGAAATAGAGAAAAATCATACAGACAGAGAAGTGAGAACTCG
TTCTCAATTTCTGATCACCATCGACCTTAAATAAAACCTACTACAAGATACTATTGCATG
TGCTAATACGTACCTTGCGCGTCTGTTCTGGAACCACACCTCCACCTGCCGCGACCGCAG
GCCCAGCTGCTGCGCTAAGGCTGCCTTCTGCCTCTGCACGTAGTATGTAGCAGCACGCAG
GGGTTTAGAAAGCGACTATAGAGTAGAGAGGAGTACTAAAGAACTGCATGAACATGGACG
CCAAGCATGCATGTTTCATGGAAGATACTCCAAAGAAAAGGCTAATTACCGGGTTCAGAG
TGGGGTGCTCCCGGAAGCTGTCCTCGAGCACGGCGGACTGGTCCTTGGACAACCGGAGCT
TCTTGCGGGAGCCGTCCATGCCGCAGCCTCCGTCCTCGTCGTCGCTGCCGCCGCCACGCT
GGCCGGAGCGCTCCTCGTCCGCAGAGACCGCGCTGACCCGCTTCGCAGGGAGCAGCGGCA
TCTCCAGGAATCTCCTCTCTGATCAACAGTTGCCCACATCCTATAGTATTAGGCACGATC
TACTCTCGCTAGCCACCGGAGTCGAAGCAGTAAGCGCCAGTAACATTTACCTGGAGCGTG
GAGCAGCATGGCGACATGGTGAGTGCGAGGAGCAAGAGGCGAGCTGAGACTGAGGCTGAG
CCCTAAGTCGTCGGCCCTCTCCATCATCTCCCTCCCCTTCGTGTCCCGTCTATCCCTCTC
TCCCAACCTCTATTATCCGAGCGCGTGTGCGTGTGTGTGGAGTTTGCAGTTGCAGTTGGG
GTTGGAAGTTGGAACTCGGAAGTGATAAAGAAGTGGGGGGAGAGTGAGGGTTTTAAAGAG
ACGGGGAAAGAATGTTGGATCTCTCACATAGTTTCTGGGACAGCAATGATTAACTTGTGG
GGCTGGTTCCTTAATTGGTGCAATCATAACCCCCCCACCGCTAAAGGCTCAAAATTGCTA
GGTTAGCTAACTTCAGCTATTCTCCACTCAAACCGGGATTTTTCTTTTGGAGGAAAAGAA
AAAAACGGTGGGCATTTCAGCTTTGACAAATGTTTTTGTCCACCGAATGGAGTGGAGTAT
ATATCTAGCAAACAACCACCTTTTGACTTATGGTCCGTGGGCAACTATATGTACGTGCAA
CATAGAATAATTGCGTATAATTATCTCAACTCACCTGTGTTGGACCAGTCACCACCAGTG
TCATGTACTATTATACTAGCAAAAAAGGGAGAAATAAGAAAGCAAAAAAAAGAAGAAGGA
ATAAGAAAAGGAAGAAAATAAGAAAAGCAAAAAAGAAGAAGAAATAAGAATAGATAAAGG
GAAGAAATAAGAACAAATTTGTTCCAATATATAGCACTTTTGTGGAGTGCAGAACTAGCA
TTTACAAAAAACAAAACGGTATGAAAGGTTCATTCACAATTCATCAGAATCATGTGAATA
TTGACATTTTAAAAAATAATTTGCCAACTCAAAATCTAGTGTACGTTTGATTTTTTGACA
CTATGCACTATGATATGGATTGTGTGAGCTTTATTAATATCAAATGGAGTCTGCAATGAG
ATTTCCTATGTTAAACTTTTTTGGACGAAATATATCTTTTAACTCTTCAAACTTCCTTCG
TCACGGTTTAGAAGACACAGTTAAACTTGCGTGTATTTTTAAAATAGACAAGGTTTAAGA
CGCGAAAACAATTACTCCTATTAATTAGTACTAGTATTACTCATGCATGCGCCCTCCTAA
TTTGCTGTTCACACATTAGTACTAGTATTTTCTCACTTGATTAGGCGCATTAGCATTTAC
ACATGCTACATCTCACAACCAATCGAAGACTACCTTGGTCCCAGAGTTTTGTCAAGCGTG
CCTTCTAAACCGTGATGGAGGGAGTACTAATCGCCACGCCATACGATCCATAATAAATGT
TGTAGTTTTAGTTCAAACAGCAAGACGCCACTTTTTATGGATCGGAGTATTTTAATTCTC
CTAAAAAATAGTTTACTTCTCATATCACTACATAGCTTCTCGCATCCTTGGTTACTATAC
ATAGCACTACGTCCCAATATATAAGTATGTTTGTCTTAGTATTGTACCCTAATTAACTTC
TTGTCGTTAGAGCCGCATTAATCCTCACCAGGGGCAGAATACCAAAAGATATTTTAATAA
CCAGTTATTAGAGATGAATATTACTCGGTAATTTACCAATTTTGACATAGTATGCATGAA
TTATATTTTCTTTATAAAATTGTAGAAATTTTTAAAATTCATTTACATTGTCTCAAAGAT
ATTTTGGATATTTTGGCAATTGTTACCGAGAAAATGACGGCAATTAACTACTCATCTAAG
TGCACAACATTATGTTTGCCTACTGAAGAACCGTTGGCTTTCACTCCTTCCGTCCCATTT
CCGGCAATGTGACTCGTCGAGCACACACTCTCGATGGTTATATTCTTATAGAACCCCTCA
TGTAACTTTAAGTGGTTGTTTGGATAGCGAATAATAGCAACCAGTTTTTAGCAAAACTTG
TTTTAAGATCTTCTAGAAAAGCAGTTTTGTGAATAATTCAGTTCGGAATGTGTGTATACA
AAATTCCGACCAGACTCGGGTGAGGGAAATTTTTAGCATGCTCTCTCTTGCCCCCTCATT
GTACATATGAGGTAAGAAGGTAAGAATTAATCAGGCCATTAATTAATGAGATCAACTGCT
TACATCTATTATGTGTTCTTACCTCTCATGTGAAGAGAGGAGGTAAGAGGAAGCATGTTA
AAACTGCTCTTAGGTGAGCGCACAAGGTTGTTGAGCATAAATAAATGAGTTCATGTAAAA
GAAGACCAATATTTGTTTTTTCTAAGAACTTGGTTTGGGTTTATGGGAATCCATTTTAGA
TATAGTCAAGTTTGTTAAATTAAACCAAACAAAGATTTAGCTTGTTATGTTGCTTAAAGA
GCCCAACAGAAAACCAGTTCTTCTCTAAATACCAGTTACCCAAACAACCCCTAAGCATCA
TTATAGGATCCCTACATCTGTATCTGGTACCAACAACTTTGATCAAGGATGGTATCCCGT
TCCTTGATGGCTTGACAAACGGAGACCACCAATAATCTATGTTATAATAGCCTTGTCTTT
AGTATCACATGGTGATATTAAATCGACTTCCTAGCATGTAACATTTGGGGCTCGAATGGG
CACTTTCTATGTTGGGAGGAACAAGCAAATGCAAAAGAGATCAATGACGAGATCTACATG
CCCCTTCCCTACACAAGGCCGAGAGGATGAGGTCTCGTCAAGGAGGTAGAGGGAGACAAT
ATTATTGTAGAAAAGAATATAATTTTTTACGACAAAAAAAGATGGAACCGTGATGCTCTG
ATGAGAAAAAGCTCGTGTTCCCTGGCGAGGAAAAGAGGGATGAACTTATTGGAGCTAGGG
TAAGAAATGATCAATAGTTCAATACAATGTTGTTCTCTCCGAAGGATCATGATCTATTCC
CCGCCGTGATAACACAGCGAAACAAGTGGTGCGCTCGCAAGCACGTTAAATGGCGGTTCT
ACAATGTGCGCGAATCTAAAAAAAGTCTAAATGTAAATCAACTTATCCTTGACGACATAA
AAAGAATCCACGTTTCACTCACCAAAATTGATTGTTTTCTCCCTTCATTGGCCACTACTA
GATTTATAAATTCCCCTGTCTTCTTTTGTTTTGTTCTGTTTTGATGTGTATGCACTTCCC
TTGTCTCAGAAATACTACTCGATCGTCTCTTTTCAAATGTAAGCCAACGACATAGTGATT
AGCACTAGAACGAGGATTGCCATGCGAGCTTTGGGTTCTAACAGGCAATGATCGCATCAC
GTAGGAGCAGTGCATGAAGAAATGATTGGCTTTCCGAGTTGGTAGCAACCATAATGCTAC
GGGCCGAGGATGGAGGGCATGATTGCGCAGGGCGTGCTCCGCGCGCTCGCATTGGTAGGG
CGCAGGGGAAAAAAGCCAGTTCAAGTGTCCATTCATGCGAGCGCATGGCCTTTCCTCCAG
GCCCAAATCATCGTGTCCCGCTTTGTGCCGGCACGCACCTATCCCTTGCCCGGCCCCGCG
CACCCGCCCTCATCTCCCACCCATCATCATCCCATCATTGCCTGCCCGGCCCGCCCACCA
CCTTTCGACAACGCGAGGCTAGTCTACATGGGTTGGAACTCAACCGGCTTGTACAAGGGT
TGGTGACTTCTCCAGGGGTTTGTTGGATTGGCTTAGCTTTACGTACGTGGTTTATGCGTG
CCGGCAAAGATCAATCGTTAACAGATGCTCCTGACATGTGTGCGTGGGGACTGAGATCCA
GTGCCTCGATAGAGCCAGGGCATGGAGTGCCTCGCCCACATGTATCCAGCGTCCAAATTC
ATCCTATGGCCAGCAGCAACTCACGATAGTGTCACCTGTACACAGAACCACGATAGTGTC
ACCTGTACACAGAACAAAGAACAGGCAGAGGAAACAAAGAAGCTTCGCTGGCTGCACCTC
TCCAAGCTGATCAACGACGGCATGCGATGGGCAAGATGGGTTAGTTAACACACAATCAGT
TCTTCAAAACAACAATACTCCGACAAAACATCAGTCACTTGGGTTCAGTTTAGCAAACAT
AAGGCAAAAAGAAAAATCTGATCTATTTTTAGCAAGCAAAGTCACTTGGGTTCAGTTTTA
GCAAACATGAGGCAAAAAGAAAAATCTAAGCTATTTTTAATACATGAACACTCAGTTAAG
ATGCTCAGTAAAACAACAATATCTATACCTAATAATAAAGCNNNNNNNGCTTCCGTCGGA
AAACCCACCACGACATTTTTATAATAAAGCCCCTGTAATTTTTGTTATTC