morexGenes - Barley RNA-seq Database

Contig contig_92922

Source Contig contig_92922

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_92922 (4382 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_92922

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_80817	2	614 bp	MLOC_80817.1	Available	Available	LOC_Os06g06190.1, FRAME:-1, EVALUE:9e-58, 13106.m00633 protein uncharacterized protein ycf45, putative, expressed
MLOC_80816	2	677 bp	None	Available	Available	None

CDS Structure of MLOC_80817

CDS Structure of MLOC_80816

Contig Sequence (4382 bp)

>contig_92922 4382 assembly3_WGSMorex_rbca.fasta
GGCATTAGTAAGTAATATTTGGCACTAAAACAAATGCCTTCATGTCCATATCGTAGTCCA
AAGAGCATCCGCGTGGTAATGGGTGGGTTCATCCTCCTGGTTGTAATCACCGTCGACGTC
GTCGTCCTACTGCAATGTAAATAAATAGCAACACCAGAAAATCACAAAGTAATGACATTT
TTTGCAAGGTATAGAGCAATGATTGATACGATCAAATATCAATAAACATCAGCAGAGTCA
AGTATGCATGCCAATGTCATTAGCAAAGTACAGAGTAATGACTGACATAATCAAAATGTC
AACAAACATCAGCAGAGTCAAGTATGCATGCAAATGATATTTTCAGTGCGATCAGATCAA
AGAAAATAGCCGTAAAAATACTGAATATTCTCTGTTGATGATTTTGTTTTATTTTGCGGG
ATAAGTAACCACCGGTATATTCAAAGTATCAGTAAACATCAGCAGAATCGGGTGTGCATG
CAAGTGATACTTTCAAAACAATCAGCACAGAAAAAAATAGTCATCAAAACTGTAAATAGT
CTTTATCAGTTGTCACAAGGTAGAATCTGCGAGACCCGAGTCTTTCGGAACAAACTCTAG
GCCAAAGAGAAACAACAATACAAGACATATATGTTGCAAGTAGTTTCTTTGTTTACTCAT
GTTTACTGAAAGCCAACAACAGACATGTAGACATGAGCACACAGAGACTAAGCATACAGG
TTCTACATCCAACATACCACACTTTTAAGCCAATCGCTTGTTTCAGCTTTAGCCTTCTCT
CTAGGATCCCGCGGGAAATAAGAAATGATGATGAGATTCATAACAAGTGAAGAAAAAGGG
GTTAATCAAACACAGAAAAGAGACCGAGTGCATACAGTTTTCGGCTGTTGTCCTAAGCCC
TCTTTCGAGAAGGCCTTGGTTTTAGTTTCCTTCTCAAAGACCTTAAATCGTTCCATCTCA
CGCTCAATCTGCTTGCAGGCATCCATGAGACAGATTGCACTAGCATGTACCGTCCTAAAC
TTGAACTGGAATGACACAGTTCATCTTGCTGCAGTGTGAAAATATGATTGTTTCGTAACA
GTAAATAGAATCAAGTGCAACATGTCATTACCTGTATTCCTCCGACAAGCATATCTAGTG
AAGGATTCATGGTCAGGTTCTCTATTGTTACACCTTGAGCGGAGGCAACAAGTTGTATCC
CCCGCTTTGCAATGGTGCTAGCACCCATAGCCTCTAGCTTAGTTCCAATTTCATCAATGA
CGATTGCGTGAGGCATGTGATTTTCGACAGCTTCTATCAACACCTGATCGGCATTAAAGG
GACAGATTTAACATACACGGTAAGTGTTAGATGGGATATTGATGTTCACTACAGTATAAT
TCTGACATAGTTGATAAACAAGTACAACTGTTTTAAGCATGTGTGTCAATGTCGAGCAAT
AGGCTTGTGAGTAGTACAATACAGACATATACGATTGTGCACACTTCATAAGGAAGGAAG
GTATTAAACTCAATAGAGCACACCTTATGCTGCATTTCTTGGTTAGGCACTTGCAACCTA
CGGGCATTGCCTATTCCTGGGTGAGGAATGTCGCCATCTCCAACTATCTCATTGGATGTA
TCAACAATCATCACCCGCTTATCGTAGTCATCTCCTGGCTTTCGTGCAATTTCTCTGCAA
GGCAAGGCAACAACCTGATGCTAAAATTTGTACATACTACCATAGAAACTCTGCTAATTA
GAGTTGCCATACGTAAGTATCCATCACTATTCACTAGTACACTGTAGCAAAATCACCGCG
AGAAGTTCACTAATCATCTAAGCATACCTTATGACAGTTGTCTTCCCCACCCCTGGTGGG
CCGATGAGCAGCAACGACCCACCATCCTTCACCAAATCCTAAAGCAAATTAGCACTTCCG
GGCACATCCCTCCCGACGCGGCAGGTCGGTCCTACAATGTCTCCCTGCCTGATCCTAATC
GCGCTGATCCGGTGCAGCGTCCGGCTAATCCCGGTGCGATTGTCCCCTCTAAAATCTAAA
AAGAACTAACAAGATTTAGATTTCTAAGCAGAGTCACCCAAGCTCCACTACAGAAATCAC
ATAGAGAATGATATATGAACAGAGATTTCACTGCCTAAAAATAACTCACAATCCATCAAC
AATCACTTATAAAACAGGCATTTGTTGAATGGTCAGGCAATTAGCCTAAACCATGCCTGT
GGATCTGACTGTTTTTTAGGACTCCAACAACATAACAGCAGGTTCATATCACTTTAAAAT
AACAGGAACTATGTAATGAACGATAACATAAATGCTAAAAATAGAACTGAAAGTTCGTGA
ACACGGCACATATAGCATGGGAGTAGAGCGCTGAAACACACAACAAGAGGCAATCACACA
TCTCCAAGTGGTTCTTTAAATCATGATCACGCTTGCCTTCAGCTGGCGTCTCTGAATTTC
GAAGCAAGGTTTTTGAGAATTTCAGCACTTGCGTCCACATTTCAGTGCCGCGTGTCACTG
TCACTCCAAGCCGCTTCCCCTTCACCCACTCTCCATCAGCACGCAGCAGGCCAGCAGCAC
GGCATGACACTATCGACTACCCACCCGGAGCCGGCAAGCGATCGGAGCCAAGAACGCCCG
CGACGGCGACGGGAAGGTGCTGGCCCTCCCCCTGGCACGGAGGGACCAACCAGCGCAGAA
CAGCGCAGTTCTTGGTCTTGCGGCACAGGATGGAAATAATGCGGTCAATCTCATCATCAC
GGCCGACAACTAGTCCGACTATCTTGCCGGTCATGAGTCGCCATAGGTCCGCAGAGCTGA
TTTACGATCATAGTAGTTCCATGCCGCCCAACCCAAACTAATAGTTGTTCCAAGGAAGAC
CAAAGGTACTTCCCGTTGCCAAATTGAAGACATACGACTCTGTGATTGCATTAACAAAGC
CTCCAGCCGATAGAAGACAGTTCATTGCACAACCCGCAACCCGAGCAGTGGATCGTAGGT
CCCTCTCATACCTGTGCAGAAGCCCTAACCTGAACATGGAGAAAAGACAACAATGGATCA
TATATAGAGAGAGAGGGTACATAATCAACAACACAGCGTATCAGTACCACTATATTCCCA
ATCATAAACAAGATTTGGGACATGTATCGTGCCAACAATACCACTACTAGTAGTAATGAG
TTAACCAATTTGGGCCAGTATAACCAAGACAAACCTACTGCTCTCTCAAATTGCATGTTA
CCACGCTAAAGATTTGATTTTAGGCCAAGACTGTGCAGATAAAACAAGTTAATATTTTCC
TCTTCATATTATATCGTCAAGCATTGCACGTTTCCATTCTAACACGTTTAAACCAAAACA
TTTGGTCATCTGAAAATGGAAATCAAACTACACATTTGCCCCTACAAGCATTATGACAAA
CACCTATCAAGAAAAATCCAAATCCTTCCGCATGTAAACTTGAACATGCACTGGAAAAAG
AAAAATCATGGCAGTTGGTACTCATCCAGAAATAATTATCATTATATTCTTATTACAGTA
TCAAATCTACAGCTCGTACTCATCCAACACAAAAATCAGGAAAAAAATTAGAACAGGCAG
AGGATGCAAAAGGAAGGAGGGAGGGGAGACTGGAGAAGAGGGAGGAAGGGCAAAGGAGTT
GGTGGCTACCTGCCTACGGCGTAGCTCTGGGCGGCGACGTTGCTGGGCGGGAGCAGCTGC
TCGACGGAGGGATGGAGGCGCTTCTGGGCTCCTCTACCGGCGGCATGGCAGCGGAGGCTT
TGGCTGGTGGCGGCTAGGAACCCTACTGTCGCGCTCGGGGAGTCTGGCCGTTCGCTCCTC
CCCACAATAATCAACCCCTTCACCTCAACCCTTGAGCACAGAGCAATCCCCGACGACTCG
ATCAAAGAAAATAAAAAACCAGATCGCCCGGCTTGGCCGAGCGGGGAGGAGAGCGGGGGC
GATCGGGTACCTTTGCCGGCGGCTCGACGCCCGGAGGTGCGGGAAGGTTGGACGGCGAGG
GAGGCGGGCAGGGCGAGGAGGAAGCGGCGCTGAAAGGGGAAGGAAGGGAGGAAGGGAGGG
AGCCAGATGCGCAGACAGACGGGCGGCAGTGAAGTCTACCACGGACGGCACCACCCCACC
CCCACAGACACGGGTGCAAAGGAAGAAAGGAAAGCAGCAGGAGAAAAGAAAGTCCAACCG
CAGGCACCCTGGCGGGCGGCAGCATCTCCTGCTTCTGCTGGCCGGCGGTGCGGCGCGAGG
AACCCTAGCTGTGGGTGCACGAGGAGGCTGCGGGGAGGGAGATGGAGGAAAGGGGAAGCG
AGAGGAGGGGCTGGTTCGCGGTCGCGGTGGAAAACTACTAATGGCGCACCACGAGCTGGT
GC