Map Locations of contig_9253 (5670 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_9253

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_80737 2 1399 bp AK357003 Available Available None
MLOC_80738 1 886 bp MLOC_80738.1 Available Available LOC_Os07g29620.1, FRAME:-2, EVALUE:1e-136, 13107.m02977 protein OsSCP39 - Putative Serine Carboxypeptidase homologue, expressed





CDS Structure of MLOC_80737






CDS Structure of MLOC_80738






Contig Sequence (5670 bp)

>contig_9253 5670 assembly3_WGSMorex_rbca.fasta
ATCGTCGACGACGGCGGCGACGCCACCCTGCTCATCCACGAGGGCGTCAAGGCCGAGGAG
GAGTTCGAGAAGTCGGGCAAGGTCCCCGACCCAGAGTCCACCGATAACCCCGAGTTCAAG
ATCGTCCTCACCATCATCCGCGACGGGCTCAAGACCGACGCCCGCAAGTACCGCAAGATG
AAGGAGAGGCTCGTCGGCGTCTCCGAGGAGACCACCACCGGCGTCAAGAGGCTGTACCAG
ATGCAGGAGTCCGGCACCCTCCTCTTCCCTGCCATCAACGTCAACGACTCCGTCACCAAG
AGCAAGGTATACTTCCTTCCTCTGTTCCCATTTTCCATATCAGATCTGTGCTCTGTGCCT
CTGTGTCAGCGCCCTTCTACTTGTTTGAGCGTAGTAGTATTGTCTTGCATGTTTATGTTG
TACATCTGATTATGTTAATATTTAGATCTCGTTGTTGCCTAGTTTAGATAAGGCTTAATG
GTGAAGCAGCGCTGGAGTATTAGACCTAGTTCTGCATCTTCGTTTTTGGGTTTAGTGTCT
GTTACTAGCTTACTTAGATCTGTATCTTTGTCTGTGGGTTTAGTGTCTGTTAGTCGCATG
CTTTCTGAATCTGACGGTGATGGAGGGTCTAAGTATAGAATAACCTGCTTACCAGATTTT
ATTATGTCACTGCACTCATGCTAGTATGAAACACTGCTATGTCATGCACTGTATTATGTG
ATTTATTTTGTGTAGTTTTTTTAATGTACTCTTGTTTTGTTTAATCAAAAGGTAGACAGA
AATGGCATGTTAACCTTGCTAACAATTTATGTACTAATCTATGTTGTTTTAAAGAACAAA
CAGTAATCTATGTTTCTTCTGAACATTTTGACAACCTTTATGGTTGTTCTGTATCTTTGT
CTTTGGGTTTTAGTGTTGTTATGCTGGTTGTTAATTACTACTAATAATACCATTAGTCAC
ATGTCTTCTGGATGACAGGAGGGTCTGAATATAGAATATCATTTGAGAACAAAGCACAAT
GACATGTACTGAATTATGTGATTTATTCTGTGTAGTTGTTCGTTTAATCAATTTAAATAT
AGAATATCATTTGAGGACGAAGCACAATGATATGCTCTGAATTATGTCATTTATTCTGTG
TGGTTGTTTGTTTAATCAATTTACTCTTGTCCTGCTTTAATCAAAAGGTAGAATGCAGTG
GCATGTTCGCATTGCTAACAATTACTAACATATGTTGTTGAAAAAAACACTAATCTCAGT
TCACAACCTTTATGGTATGCCATGCTTGATTACGTGTTCTGAGTAATTGTTTGTTCAATG
TAATCTTGTTCCATTTTAATCAGAAGTTAGAATGCATGACATATTCACCTTGCTAACAAA
TACTAATCTGGAGTATGTTTCTTGTCAACAGTTTGACAACCTTTATGGTTGCCGTCACTC
GCTCCCTGATGGTCTCATGAGGGCCACTGATGTTATGATCGCCGGCAAGGTTGCTGTGGT
CTGCGGTTATGGTGATGTTGGCAAGGGCTGTGCCGCCGCACTCAAGCAGGCTGGTGCCCG
TGTGATCGTGACAGAGATTGACCCCATCTGTGCCCTTCAGGCCCTGATGGAGGGCATCCA
GATCCTCACATTGGAGGATGTTGTCTCTGATGCCGACATCTTTGTGACCACCACTGGAAA
CAAGGACATCATCATGGTTGACCACATGAGGAAGATGAAGAACAATGCCATTGTCTGCAA
CATTGGTCACTTTGACAACGAGATCGACATGAATGGCCTTGAGACCTACCCTGGTGTCAA
GCGCATCACCATCAAGCCTCAGACTGATCGTTGGGTCTTCCCTGAGACCAACACTGGCAT
TATTGTTCTTGCTGAGGGGCGTCTGATGAACCTTGGCTGTGCCACTGGCCACCCCAGCTT
TGTCATGTCCTGCTCATTCACTAACCAGGTATGATCAGTGTGTATTCTACTGTCAACTAG
TATGAGTTAACAGCTGATACAAGTATCGATTGTACTTACATTTTTGTGCTTGTTGCAGGT
TATTGCCCAGCTTGAGTTGTGGAAGGAGAAGGCCACCGGCAAGTACGAGAAGAAGGTGTA
CGTTCTCCCCAAGCACCTTGATGAGAAGGTCGCGGCCCTCCACCTGGGCAAGCTCGGTGC
CAGGCTGACCAAGCTCACCAAGGCCCAGTCCGAGTACATTAGCATCCCAGTTGAGGGTCC
CTACAAGCCGTCTGCCTACCGGTACTAGTGCGTCCACTACAGCACGACTAGCGGCTGGGC
TGAGCCTGAGCAGGCGCACCGACGGGAACTCTGCCTCGGCGACCTATGAACTATCCTGTT
TTCCTTTGCATTATCTATCTAGATCTAGGCATGTTGTCTCTTAGGTGGAGGATTTGTCAT
GGTTACGTTTTTAGACCGGTTAGGGTTGGTTGACGGAGGTGGCGTTTGCTTTTGCCCAGA
AATAATTGCGTTATTATTTTGGTTTAAACGAGGTGTGATTTGCCGGTTTTGTCCTGTTGA
TTTTACATGTCTGATGCTCCCTCCATCGATTGCAATCTACTCCTTGGTTTGCGTCTCTTC
ATTCTTTCATAGAATGATACTCCCTTCCTAAATATAAGGATTTTAATATGATCTACATAT
GTATTGAAATCTGTAAGGACTAGACATATTTTAGTGTAGATTCATCCATTATAAGGATTT
GTATGTAAGAATGGGAAGCAGGGCTGCAGTGTAAGAAAAGCTTCAACTAAAGGGTACCTG
TACCCGAAATCAAACAAAATTCTCGTTCATTTAGGTATTTTGCGCCAGTTTTCAGGCGCT
CATTGTTAGGTTGATGTGAGATATTTTGCAATGGACTGAGCTCCAAGCGGAGTGTTCATG
TGCGCCAGTTTTCAGGCGCTCATTGTTAGGTTGTTACAGACAACACAAAACGGGTCTTTT
TTTTTTTTAAGGCAACACCAATTTTCGTTAACTATGATGGTGCGAGGGCAAATCACCTTC
AACACAAGCTGCCACTTTGGCAGGAACAAGGTTCCCCCACTCCTCAAAATGGTTGGTTTC
ATACATACGACCGATACTAGCTAGTTGATGCGCGGCGGAATTTGCCTCTCGACGACACAC
CGTTATCTTGTTGCTAGAACTCAAACCTTTTTTGTTTTGTTTTAAAGGACAATAGAAATA
GTTTTGTTTTGTTTTGAAGGACAATAGAAATAGGAAGTTTTTCTATGTTGATGCTATTAT
TAGATCATGTTTATGTGCCTACAACAGAAGTGTTGGCGCGCCGAGGTATGGAATGGAACC
GTCTGATCCCTAGGCTGCTCAAGGATAATCTTCGAGCCTGATTGTCTAGATATTATTTGA
TGCTTGCTATATATGGAGATAGTGAAATTTTAAGCCCATCCGAGTGCTTCCAAATTGCTC
ACAGGATTGGCTCTGCTCCATTTGTGCATTGTGCAAGAGAAGCGAACAAGCCGACACTCT
GCTCAATTGAACTGCAAAAGCGTCTTACATTAATTTACAAAGAAATACTAATTATACATT
TTTATGATTTGACTATGTTTGTTAGGATCACTGTGTTTTTCAAATTCCTATGGATCAGAC
ACCCAAGTTTGCAAATTTTCTGTATTTTTCTAATCCTCTATTTAACACATGCGTTCCTAT
TAATTTTCTAAAAAAAATTTGCCGCTGAACCAAAGGAGGTCCAAGGGAATGCATAACGTA
GTCCACATATGAATCAAAGGGGATAATCTTCGTGATACATTCGTATTGTCCCAGCAATCC
TCTGAAAGCCTTTTATTACACACTCCAACCTCGAGCACCGTACAAGAGAAATAGCATATG
TACGGTCGCCGACGAGCTTCCCATCACCTAAGATCATCCCAAGGCATGTGAGCGCACACC
AGATACATTACACTGGTAGCCAGCGCAAGGATGGATTATATGGCAAAGTCGAGCCTCTGA
GAGCTCGAGGAGGCGTCTGAAAGGTTTCCTGAAATCCACCTCTTGAGCATCTCCAACGCG
GCCTTTGGTTGATCCATGGGAACCATGTGACCGGAGTCGTGGACCTGATCATAGCACCAA
AAGTTAGTTCCACAATAAAATCCAAACTGATGTAGGGCGACACAATACACAACAGGCATT
TTGCCCTTGGAACACTCTGCTGTGCTGTATCTGACTGATAATTTCTAAGTAAAGCATACT
AAATACTTGTGAATATATATAGATACAATCGTTTCTTGAATTTGGCCTGGTCATTGTCTG
TTCCAGAACTGACTAACTGTTGGTAAGGGGGGCAGCTTTTGCGTTTGCGTACCTTCAAGA
AACTCAAAGGGCCGTGGCTTTTCAGAACGCCGGCTTCTTTTCCATCAACTGTGAAGGGTT
TCTCAGTTGAGGACACGAAAGCTTTCTTTCCAGACCATTCCATAGAGTCTACCCATCTTG
AGTTCCCTGCCCAAGTCATCAATAGATTATGTATGTCATCAACAGATTATGTATGTCATC
AGGAAAAGCACACCCAGAATCAGGAAACCCAATAGTGGAGCACATTTTGAACCATATATT
GTCCTACTTATTTCATCCACTGGCTATGCAATTTGCCATTATGCACAACATAACATGAAA
AGCATTGAAGGTAGATTTTATCCCATTCTGTGATTTGACAAAATGACCTCTACTATGCCT
TGCGTTATGTAAGTGTACGCCGATATATATTTCTAAACTGTGCTTCCAATACGATTTTCA
TACTACAGAACCAATCAAGATTCAAGTTGTATGATACATATTAAAGTCCATTAAATTCTT
AATGGATCTCTTGCACGAATCACAATTGTAAGGAAGCATAGCACAGGTATCACATGACAA
AAGTGTAGCAAATGTGATTCTCAACGTGAAGAATGTCAGATGAAATATGTGGTGTGGACA
AAACAGAAGCAAATTATAGCATACAATTTTCAAGAGTTTTCTGTTGCAAGTTGCAACACA
CTCACCTAGCCAGTTGCATATGAGATCATACTCTCCAGCATAAATCAGCACTTTGATGTC
GTTCTCAAGGAGTTCAGGGATCCCAACTTCAAGGTTCCTCATCCAATCTAAGAGCATAGC
CTGATAGACAGTTGGGCTGCAGGAGACGAACTCTATGTCTCCAACGCCTAGGCTCTGTCT
GACAGATTTCAAATTGAGAAACTTCTCCAAATTAGAAAAATCATAGCATAGGCTCCCCAC
ACATGGCTTCCTGATGTCATAATACTGCAAAGATGAGGTGATCAATCAGAAAACTTCAAA
AAATAAGGAAGAACCAAATAAACTTTTGTATTTTACCCTTTACCCTACATTTTTGTTCCC
GATTATCAACCTGATGGAACTGAATATTGTATTGCATACAAAATAGGCAGCAAGGCAAGA
TACAGTGCCAGAGGTACCTGAAACATAAGATAAAATTAAGTTCAATATATACATGTTATG
AGGTATGTTAGAGTTGGGCTTATGCCTTTTCTTGTTTTGAAAAGAAATTGGCACAACAAG
GCAAGGAATGATGTTAATGAACAGTGCCTCCAAGAGGCCAAGTTGACCAATGCTAGAGAT
TTACACACAAGCAAACCAGGAGTCTAGGAATAATTACCACAAAGCTTGACAGCAAATTCA
CAAACAGGAACAACTTTATTGATCTTGTTA