Map Locations of contig_92497 (4154 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_92497

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_80727 1 680 bp MLOC_80727.1 Available Available LOC_Os11g03420.1, FRAME:-1, EVALUE:2e-21, 13111.m00281 protein ZF-HD protein dimerisation region containing protein, expressed





CDS Structure of MLOC_80727






Contig Sequence (4154 bp)

>contig_92497 4154 assembly3_WGSMorex_rbca.fasta
TCAAAAAAGAAAAAGAAAGAACAGGGGGCTCACGATGGGGGGGGGGGCGACGAGATCGGC
ACGGGCGATCGACGGGGGTGAGGACGATGGGCACGGGGACGGGATGACACCCTAGACAAA
TCTTGGGGGAAATGAAGCTTGGAGAGAAGAGAAAATGTAAGTTTGATTCGGGTATTTCAT
CGAACACCTCATGTTCATAGGAGGTGGGAATAGAGTAGCACACACTGTCATACGCTGGCC
GGCCAAAAAACAGAGGAGTGAGCTGGCAGGGCATATATATAGGCATACTTTTAGTCCCGG
TTGGTGTATAGAAACGGGACTAAAGACAATCCTTTAGTCCCGGTTCCAAACTCGAGCCGG
GACTAAAGTGGTTGTACCAGGAGCGAGACCTTTAATCCCGGTTCGTGGCTGGAACCGGGC
CCGGTGCCCGCCGAGGGCCGACCCGCGTCCTCGCTGCTCAAACCGGGACTAATGCAAACA
TTAGTCCCGGTTCATAAGTCGACCGGGACTATCGCTCGATCGAGGCTAGGATGAAAGCCC
CGTTTTCTACTAGTGTCAAACGACATATACGAATCCAAGGTCATCGATCTTCTCAATAGC
TTCCTATTGTGCAGGATTAAGATCGCCCTCAGGCTTGACCTTGATGGCATCATAGCAGTA
CATGGTTTGATACCAATAGACTGCTCTCGTGCGCCACCTCTAATATTACAACCCCTTGAA
GGTGGACGACTTCAGATGCGCAGCAAAACCACTTGAAGTAAATTGCAATGAAACATTATT
TTTTCAGATGCTTTCTTGTGATGACGAAAAAGGATTTCCTCCTCTTTGTATTACAAAGCA
TCCAACCAGAACATCCAACGATAGGTGCTCGGGCGGAAACAGCACAAGCACGCTCAAAAG
AAATGGAAAAGAAAATACAAAATAAATAAATGGCGACACCGATGGATCGACAGAAAACGC
AAAAGACTTGCGACCGCTGCGCCCACCAAGAGACATCCACCAAGCTCCAGGACTTCAAAG
CGCCGGTACAAATCAACACCTTCAAGAAGGAATGCGACGATGAAGACGCTGCTGCCAAGG
TTTTCCCCGGTGCGCGACCAAGACGCGAGGAAGGGTAGCCCCGACGCACTCCAGGAAGGT
TCGGCGACACCCAAAGGCGTTACCGCGTCAGTGTCAGCTAGGCCGACGGGGGTTTCCTTT
GATCCCAACCTACACCTCGGATGCTCCGAAGCCTGCCATCTGGGTCCATGCTGAGTTAGC
AAGCCACTTACACACCAATAACGGCTAAACACGCGGTAGCGACATGTCTGCTCCTGAAAC
AAACCAAAATGGCCCTTTTCATTTTCTTGAGACTTGTGTGATTAATGTGCTCATCTGGCA
AGAGTTCACTCACGAATAGTGTGTTTATCTCCAGCACAAATCCAAGAAACCCTACGATTG
GATGAGACGCATCAACCGTTGGATCTGAGCACAACCTCTCAACAAGAAATATCCAGAAAC
AAACAAAACTATTCCTGAAATATCCAGAAACCAACAAAATGCGTGCTGCTGGCAGTAGGC
AAGGTATAGCACTAGCAGCCTTGCCATTACCTCGTGGAAACTAGCCAGCCAGGGCATGGG
AGCGCGTGTCCGGGGTTTAGACCGGAGCTCAGCTTCCCGCCCTAATCCCTTGGTGATAAC
TTTTACTTGCGGCGTCCACTCTTCCAATCAAAAGAGAAAAAGGTCGCGGCGTCCACCAAA
AATACATAAATTCTTACAGCACTAGTCTCACGCTGACACACGATGAGGTTATTTTCAATT
TGCTAGAACAGTGATTAATCATCGATCTCCGGTAAGCCCGTAATATGGTCCAACTTAATT
ATAACCAGGAGATGAGGAGCCTACATGTGCGACGATGATGCGAGTAGCTTGGAGAAAGAG
GAGATCCATATATCCAAAAGAAAAAGGTTAATTGCATTGTCCCTTGACGTGGTGATCTGG
TGACATTACACCGAGATCGGTTTGATTGAAATAAGTGAGAGTAACTATAAATTAATTACT
TTCTGACTCTGGAATGTGAAGAAAACAAGCCTCATCAAATAGAAACGCATAAGGGAAATC
AAATTCAAATTCAACATAAGAGGTTCACCACATCGATGGATCTACGCGGACGGGGCCTCC
CCGCAAATTATTCATCCGCACAAATTTCATAAGACGACAAGGAAGACGAATTAAAACACT
ACTAGCTGCGCCTGGGCCATGCATGATCCAGCCAGATCCAATTCACCGTGAGCAACAAGA
GGCATCAGCAATAAGCTTCATTGCTTCAACGGCGGCTTTCGTTGGCGGGGGGCGTCCCCG
GAGCATGGTAGTCGACGCCGAACTCGTCGACGACCTCGCGCCTGTGGAAGCTGCGGTGGC
AGCCACACGCCGCGCAGAGGAACGTGGTAGCCTCATCGACGCCTATTGACGCCATGAAGC
CTTGGCAGCCGTCAACGACATGCCGGCCGTTCCCGGCCAGGAGGTTGCGCTGGCACTCCC
TGTACCGGACGATGGCTGGCCGCGCGCCGTTACCTTGCCCCCCGTCGACGGCGGACCGGT
CCTGCCGAGGCCCCATCTTAGGCGGCGCGAGACGAACGTTTGAAAGGGAAAGCAAGTGGC
GAAGTAGCTCTGCTGCCACGCCTTGGATGGATAGATGGAAGGAGTCGGGCAAATATTGTG
CTTATATAGATGACAGTGACTACTTGGGCATTACAAACTCATGGTTTACGTTAAAGATGC
GCCATTGATGCGGTGCTACGTGTCTGGGGCTTTGGGCATATGCACCTTAGGCTAATTTGG
CACGGGGTTATACTTCGCGGAGAAGCAAAACAGACTTTGTTTTATCTGTATAGTAGTTTT
TGTTTCCTATATGGACAGTAGATAGGATTGAACGTACGTGCGCCAGTGGACCGGTTCTAT
ATTTGGCTCATAATCATTTCACTAATTTCCAATTTAAAAAAGGTAACTCATGCAGTGAAA
TCAACGTGACATTGGTTTCGTGCATGGTGTGTTGAAGTCTCTTGGTTGTGTTGATGCGAC
ACTATGTGCGGCTACAGGCCAAGGGAACACTTTCGGTTTATATTAATCTTTACTGAACTC
CATTATTTACAAATACTCTGCTCTTTTAAATTGGTTAATATATGTGTGCTTGCTTTTCTA
ATCGTTTGTTGTATTTTCTTTAGTCAGTAGAATGACGAGTAGACCCACCTGATTTTATTT
CTTTTTTGATAGTAAATGAGATTGTTGTCGCTTGTCCCAAAAAAGCTAGGGCTCCACCGC
CTCCCGCCGGCGCCGGCGCTGGTCCGTTCCGTCTTCGGTGACCTTAGGGCCATGGAGGCG
GAGTAGATCTCGGCCTTGCCCGTGGGAGGGCTCCGTTGTTAGATCATTCTTCAATTCTTA
TTTGGGTTTTTTTTTTTCAAAAAGACGAGACGGTGACGGCTCTCTGAAGAAGGAATAAAG
GTCTTCCCGTCTAGCCCGCGTTTCGGTGATGCGTCTAGCATCGTTGGTGGACGTGTGGAG
GTGTCTCTCTGGTGGATTTGCTCGGATATGTCGGTCGTTTGTCTTTGTTCGTGTGTTTTT
AGGTTGGATAATTCTGATCTACACTATTCATCTGCGACGGTTGCTGTTCTGGTGTGTTGG
TCCTATAAGGCCTTAGCACGACGAATTTTCGACTGTCTACTACAAAAGCGTTTGCCCGGC
TCCAACGAGGAAGGGGCGATCACAGCGGTGCGACTTCAGCTCACTTCAGTGCTTGTAGTC
GTCGTTAGGTGGTTTTCGAATCTGGATGTAATATTTATTTCTAGTTTTATTTGTACTAAC
ATGATTGAAAATGAATAGATTGAAAGTTTTTCTTGCCAAAAAAAAGAGAGTAGAATGATG
AGTACCTCGATTAAGTCTTTTGCGTGTGCTATATTCATATACGCATATGCTTGTCACGGG
CTACATGACCATTGCCAGCACATGGCTTTATAAACCTATGTAAACCATGGTTAAAAATGT
CACGCTGGTTCTGTGCCACATCACTAGTAGAAAAAGGACATTTTGTCCCGGTTCATAAGG
AACTTCTGTCCCGGTTTTGGAACAGGGACAAAAAGGTCGTTACTAATGCCCTTTGCCTTT
AGTCCCGGTTCTTA