morexGenes - Barley RNA-seq Database

Contig contig_92383
Source Contig contig_92383
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_92383 (8005 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_92383

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_80711	5	4907 bp	MLOC_80711.3	Available	Available	LOC_Os07g35600.2, FRAME:-3, EVALUE:5e-89, 13107.m03645 protein expressed protein
CDS Structure of MLOC_80711

Contig Sequence (8005 bp)

>contig_92383 8005 assembly3_WGSMorex_rbca.fasta
AACACTTTCCAGAATCTCAAACTACAATCTCTGAAAAGAACTCGANNNNAGATTCTGGGA
GAAGCAGATTCTGGGAGAATTTTCCATAATCCTGATTCTCTAGAATCCAGGGTGAAAAGA
ACTGGGCCGTACGTCTGTTGCTAAATACTTCCTCCCTCCCAAAATTCTTGTCTTAGGTTT
GTTTAAAAATAGATGTATCAAAAATTAAAACATGACTAAACACATTTATATCTAGATAAA
TCTGGGACGGAGGGAGTATAAGACACTGGATAGAGGGTCATTTTTTACATCGACCCTCTC
TCAATCCAATTCACAAGTGTGCTTAAAACGCTGAGTGAGGTTGCCGGTGAAGGAGACCAC
CACGTCATTATCGCCATCAATTCCCGCAAAAAAATAATTATCACCATCAATTACGTACCT
GACTTGACGTCCCCCTCTGAAGAAGGAAACGGTGGAGACAAACCAACACTCAACAGATCA
TCAGTTCAAAGAAAAAACTCAACAAATCGTAATCACCATAACAAATCATTCTCTCCATAG
CATAAATGTTGTCACGCTGCGTCTGAAGAAAAACTACAACTCAGTCTGCTCAATCACAAG
AGAAACGAATAGGAGAAGCAGGGCAACGACGACCATGACTCAACGCTGCACTTTGCCAGC
ACCATCGGTTTCTGAACGGCAAGCCGTCCTCCCAACTCCAACCATGGAGCACACCACCTA
GAGAGCCATCACTCCAATGGATTAACTACTGCCGTGCAATGCACGAATCAATCCCTAACC
GGAGACACGCTGCTCCGATATTCCGGAGCATATACACACTGCAGAGAGAGTTAGGTTAAA
CACAAGTCAACATAGGCTGGTTGATAACATAGCAACATTTCAGGTTTAAGTACATCAGGA
CGAGAGTTGCTCCTTGCGAACCCGAAGTACCAAATAGTTGCAAAAAAGCACACTATGAAA
TGCGCTGGAATCTCAAGACAGTGCAATTTTAAATGTACCAAGCTTTGACGCAATCGATAA
TGCCTCTTGCACCAACTGAACAAGCTAGTGTAAGCAAGATCATCAATTAGTCACCCTAGA
ATATGTACGTCTCCAGAGCAGAATGAGTCAACTACTGTAACAGAAGTAGGTCATAACAAG
AGAGTGAACTAAGCAATAACCCTCACGAGAGGAGACATTGAAACAAGTTTTAGAGTCCCA
ATTCAGGCTATACCTTGCTGAGACCGAAAGAAGCTTCGGTCTTTTATTACAGTCCTGCTG
TCTTGGACCTCAGCACCAGGTTCCGCTTTTCCTACAGAATCACATGGACAAATGACAAGA
CGATCAATAATAGAGCACACACATTCAGTGGCAACTACTCAAATGCCAAATCCACAAACT
TCCCCTTTACGAAGGCTTAAACTTTTTGACGCAACAGAGGATTGATTTTTCAAAGAGAAG
GCATTCCAACATCCCATATGAAAGATCATGCACTTATGGTAGTTTTTAAGACTTCACACC
ACGAAAGACCACCACCTTAGCGAGGCTAAATTCCCATTTTTCTGCTCAATGGTAAACCTC
GCCTGCACCTCTAGTACTGGGTCCCACCACCAAGTAAGATCCGTAGTGCCTTTTCCAAAC
TGACGACATGTCACTGTCCCATAATTTTCTCATTCCTTTGGATACTTAGGCTTGAGGCCT
GAACTAGCTCTCGACCCAGAATTGTTTTTGCTAGCCTATCCACCAAATGTTTGGGTGCAG
ATCCAGAGAGGCCAAGGATTTCTTACCTTCGGCTTTCTCAGAGCATTCAACGTGCCGTTA
TACAGGCCCAGCCTGGATTGGGCAAGGGGCCGGCCACCCTGGGCCCCAGATATGCCGTAT
GCAGTCTGTATTAACTGGGCCTAGCCAGCACACAACACTATGCAGCAGCACAGGCGCCAG
GCGGAGGCAGGCCAGGTGGTGTGACGCCATGCACAGAGAACTAAGCTTATGCGGCATGGG
TATGCCCCTTGCGACGCTTCGCTTTGTCACTTGACTTGGACTAAAGCCCCGGGTAGTAAC
TAGCAGGTTCCCATGTTGATTCGAGCAATCAATTAGTACCACACACGGCTCAGCTATTTA
ATTTTCTAACGGTTTATAATTGGCTTTCCGTGTGTATGAGCACCACATGGCATGTGAGGG
CAAAGCCATGATATGTTTCTGAATATGCACGCACATATTCTCTTTGGGTGTGAGTTTGCT
AGCTAAATATGAAAAGTGCGCATGGTACACTGATAGTATTTCAGCTTTCTTGATTTTACT
CTTCGGTTTTGTAAAGGCTTTTCAGATTTGTATTCTCATTATTATTTTCCACCACAAATA
GAATTATCTTTGTTGAAAGCCTTATCTGGTTTGCATTTTCATAGGAAATTAAACTTTTTT
CTCAGTATATTTAGTGAGATTCTCTCTCTTCTTTCTAAAGATATAGAACAGTTATACCAT
GATGGGTGATCAATACATTTAAAATGTGGCACCGACCTTCTCTTCCTCCTTTAGGCCAAC
TAAATCTCAAATCTACATACGGCTCACCAACATGGTGTGTTCAAAATTTTATTTTCACAA
GAAAAAGGTCTAGGCATAACTCAGTATGTTCCGCCTTTTCTTGCCTTGAACAAGAGCAGC
TCTAGGCACAGATTCCAATTGGCACTGCAAGCCATTTTGCTGGGACTTTTATAGTTCATA
TTTTAGCTCATGGATAAGACATCTTGGTGGAGGCAGATTAGTTGCATAGAGAAGGTTGAA
GGAGATAGACTGAGGGAATGATGGCGAGACTTTTTTGGATTTGGGACTGAACATGTATTT
ATATACTTCCATGAGTGCAACTGTGGCATACGATTACGTAAAAATTACTCTTGAAAGCTG
TTTCATGAGTGCTGACAACCAATTAAGCATAAACAATGCACTCTTGAAAGGAAAGGCAAC
TTCATACCCCATGCATAATCTACACGAGTGAACCTGTTGTAGCGGAGGAGAATCAAATCT
TGACCAGAATGGCTAGTTCTCTACACACTACTGTGCGTAGACATGAATAACTATCACCCT
AGCATAAGGAAATGTTTCTTGCCAAACTATGCAATTATTCATGAATAATAGTCACCGTTG
CTCCGAGCTGATCATTTTCAATTAAAACTTTGCAAGATGTAGCTCCAAACCAAATATACC
GAGTTCCTGACTACTCCATCATGCACCATTCAACCACTAGATGGTTTCCGCAATAACTCG
TAAATGCATTCTGCATGGAATAACTCTAAGAAGAGCATCATAGGCAGGATGAGAAGACAA
CCTGGTCGAGCACGCGGTGATTGCTCTTCTCCACCTCCCTGGCGAGCTTCTCCATCCTCT
GGAGCATCCCGGCATACATGCTATCCATCCCCGCGGCCTGCCCGGCCACAGCACCCACGA
GCTCTTGCAGCCTCCCTAGCCCAAACCCGTCCACCATCGCATCCACCTTCTTCTGCTCTC
CGATGCTGTAAGCATCCTCTGCTTCGGGCGCCGCCGGCGGCGACGGCTGAGTGAGCAACG
GGAAGGACGACTCCGGGGCGAAGGAGTGGTACTGATCCCGGAAGCCGGGGCCGACGTTGA
CGACGGCGAACGAGGTCGGGACGAAGCGGGATCCGAGGAGGAGGAAAGCGCGGTAGTCGA
AGGAGTGGGTGGAGAGGTCGTCGGAAGTGTTGGGGGAGACGAGGATGACGAGGAGCGGGT
GGGCGAGGGGCGATAGGGTTTTGGACAGGGAGCAGGCGAGGGCGAGCTCGCGCATGGAGG
CACGGAGAGGGGCGCGGCGGCGGGACGAGAAGAAGCCGAGAGGGCAAGGGGAGGAGGGCG
GCGGCGGGTGGGGGCGGCCGAGGGGATCTGAGAGGGAGCAGGGGTGGGAGAGGGAGGAGT
GGCCGGAGATGGAGATGAAAAGGCACGGGGCGGCGGGGGCTTGGTCGTCGTAGTCGGAAA
GGGTGGGAGCCGGCGGAGGGGGGCGGTGGGCGCGGCCGAAGAGGAGGCCGTCGCAGTCAC
CCGCGGCGGCCCCGCAGCGGTGGAGGAGCGCCGCGAGGGCCGCGCCGGAGATGGAGAGCT
TGACCTCCTCGCCGACGGCCATCGGTGGGTCTGGTGGGATCGATGGGGACGTGTAAAGGT
CGCGTCCTCTTCTATTCTACTAGCTCAACAACCGCTTTCTGCACACCATATTGCCCTACT
TCTACAGTTCTGGTAGTATAAATCTACGTTTTTTTTAATATAAAAAGTGCATAAAATATG
GCAAATAAAAGATCTTTTGAAGCCATCTTCACAGAATTTTTTGAAAACCAAGGATCGAGT
GGGGCCTGAGTCTAAACTCTGGTGTCCTCTTGCTGTGTCTGGTGCCCTGAAGTCGCTTCA
GCAAACAACAGGAAGGCAAACGACAGCGAAAAACCATCATAAAAGCATACCGCAACAAAT
CAAATCTTCGTCCATATAGTTCGTGTCCCTTTTCGGATTTCAGCTCAGTTTCGAATCAGA
TGTGTGCTGCATTGTGAATTAAGATCCAGAAAAAACAAGAAACGAGAAACTGGACAGCCG
ACGACGGTTTTCTCGGTTCATGAGACACCGGCTTCTGAATTCAGACAAAGACAAAGACAA
AGAGGCCCCAGGGTCTTAACAGTCTGCTTTGCAGTTCACTCATCATCATCAGCAGCAGCT
TAGATAGATACTTAGGTACCGGTCGGTCAGAGAACAATGGCAGAGCAGTAGCATCTTCTG
CCGATTGACTTCATCCCTGTGTTCACCCAACCACAGCCTTCCTTGTAGCGCTCCACCTGA
CAGTCCATCCAACACACACAAAAAAAAAGGTTTCAACAGTTGATCAGAGCAATTTTTCTG
AGAAACTACACATCAAACAGCGAGAGAATCGAGTGAGAGAATCGAGTGATAAAACGGCTG
AAACTGAAGGGTAATCTAGGCAGTAGTATAGCTTGGATGTTAGTCGTATGGTGCTTGGAG
GAAAATTGCATGGACATGGCAAGAAATTGCATCTGGGGGTAGCTACCTACCACATCCAAG
ATTGTATCTGCTTCACCTTTGACCCCACCCAGCGTGAATATCGAGCCACCGAGCACAGCT
GAAGAGTGGTACCCTCTGGTGTAGTTCATTGGTTCGACAGTCACCCATGACGGCATTCTT
GGCTCATATAACTCAACGGTGGACACCATTGCTCCAGCATCAGCATCATAACCACCCATT
GCATATCTGAAAGAAACACAACATTGTTAAGCACCATGATGGGCATCTATGCTGTTTTCG
GTTGTAACAAGAGTCAGTAAAACAAAAGTTTTCAGATTAGATGGCCGACATTGTACAAAA
TTTAAGCTGATCCCAGTGGTTTTTGCCATGATGAGCTACACCAGAGACTTAATTAGATGT
CCACATTCTACAATTTTTAGTGGGGCGTCCTGATTTGTAAGATAAAATGTACATACTTAC
ATCTTATCATCAAGCACTGCCACCGTATGACAACCTCTTACTGTACTCATTGCTGGGAGC
ATTTTCCAGTTAGGCTCCCTAGGATCAAGTCTCTCAGCAGAGCTGGTAACAAACATCATA
GCATTAGCAAAACGGAAAACATACAATTCTCACTTTGAAGAAATAATAAGTTCATTGTCA
CGTAAGCCATAAGGAAAATAGGACATCATAGCATTAGCAAAATGGAAAACATACAATTCT
CACCTTGAAGAAATAATAAGTTTATTGTCACGTAAGCTATAAGGAAAATAAGACATCATA
GCATTAGCAAAATGGAAAACTTTCATTCTCACTTTGAAGAAATAATAAGTTCATTGTCAT
GTAAGCCATAAGGAAAATAGGCTAATGAATACCGTGCAATTACTCAGTTGGTTACAGACC
TACATACTGCTTCAATACAAGGAGAGTGTTTCTCTGTTGCTCGAAAAGGGGATCAACAAA
GTAATATGCACTAAGCCATGAGTTATGTTAAATGCTCTAAGACCTTTGCAGGTTGCATTG
CTGCACTAAACTACTTACTTTTGCTCGGTTGATAGTAACTAAATCAGCTTGTAACTGAAA
CTTGTCAAAATAAGTACAAGTGGTGAAAATATATCACCTCAGATATCGAACACCATTGAA
ACCGCCAACTGCATAAATCGCGCCATTAAGTTCCGCACCAGCTAGAGAAAAGCGCTGAAA
ACCAAGCAGCACAGATTGTTCAGACAAAAGCAATCATCACATCATAGAGGTTTATAGGCT
AGAATATATCATTATATGGACATGAGTAAAAAACATAAATAGCAAATAGAGAAAGAACAA
TTATACAGAGTACTACAGAAGTACGCACTTTTGCATCAGGACATTCATTATCTTTCCATG
AAATGGTCCTCCTTGATGCCGGCTTTAGATGCATTTTACAAAGTAAAAGATACTAACAAG
TTTCACTAGTCAACAGAAAGTAATTTTTCTAAATTTAATGCAAATAATCAATGGAGACCA
ACACCTAGAAGTTATTTATGTTCATAATCCATAAACACATTCTGTTCATTTGTTCACATG
AATAAGAAACTGTCTCCCTGCTTAAGCAGGGCAAACTTCTAAATTCCATACATCTGTAGT
GATTAGCGGAACCCCTGCTTCTTTCCTTACAGAAGACTTAACCCTGACCCCATCCAGTTA
AAGCCAAAACTAGCATGGTATTTCTGGTGATCCTCGTGGCGAGTGGCGGACCCAGCCCAC
AGGGCCAGGGTGGGCCAACAGTGCATACACTCATAAAGATATATTTTTATTTGTTTATTC
TATCTATTTTACTATAGTATTAAGGCTGATTCCTAAATCCAGGGTGGGCCGGGGACCACC
CTGGCCACCCCATTGCTCCGCCACTCGTGGGAGAAGGAGCCATCGAGTATGTAGAAGACA
TTGTTGTGGATATTAGGCAGTGGTGCGGAGGTTATGGTGGAGAAATCTACAACTTTGGGA
TAACATGGAACAATGTTAGGCCAACTTATGGTAATTCAAGCAAGAGCAAACCGCTGAAAA
CCAACTTATGCTAATCCTCCTTTTTAACATGCACAGTGAAACAAAGGTGTGGTTCCCCAG
GAGCTGGCTGACTAGTAGGAAAAATACCCAGCAATAACAGAGGGGACTGTTAAGCTTCAT
GCACTAGCCAATGCAATCAAAAGTCCGAACTGATGGAACGGGGTAGTACAATCCACATAT
ACTGTAACACCCCCTCCCACGTGTGATGGAAAGACAAGTCAACATGTGCAACCGGAAGAG
AGCGACGGCGTACAAAACTCATGTATGACTCAAGAGGCCTCTACGTGGACACAAAGAGGG
TTACTAGCAATTTTTTAAATAAATTGCGAAAGCATAAATTGCGAAAGCCAAGACTTGAAC
TCAAGACCTATGCTAATCCTCCTTTTTAACATGCACACTAAAACAAAGGTGCGGTTCCAC
AGGAGCTGGCTGACTAGAAGTAGGAAAAATACCCAGCAACAACAGAGGAGAGCTTCATGC
ACTAGCCAATGCAACCAAAAGTCTGAACTGATGGGAAGGGACACAAAGGGGGCTACCAGC
AATTTTTTAAATAAATTGCGAAAGCCAGGACCTGAACTCAAGACCTTAGCTTTCATACCA
TGTTAAGCTTCATGCACTAGCCAATGCAACCAAAAGTCCAAACTGATGGAAAGGGCTAGT
GCAATCCACATATACTGTAACAGAGACCATCACATATAGATCGAAGAGTTACTTTTTCCA
TATCGTATGAGCCATTCTCCGACATGGATGTTCTTATCTGTAACCGCTTAGGATTTCATG
GTTCTCATGCTTGCATAAAAAATGAAGAGATAAAAGTTGGTACTATCTCGTCTTTGGATT
GAAAATGGAGCAACTAATTTATCAGTAGGCTACTCATACTCATTGACGAGGATAGTACCC
CTGGGTATACCAAGAGCGGAGATTAGCCGTCTCCAAGACATTTGCGGCCCCCCCCCCCCC
CACCCCGGGCCGCGCCCCCCCCCCC