Contig Data
morexGenes
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Map Locations of contig_92299 (3282 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_92299

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_80700 1 981 bp MLOC_80700.1 Available Available LOC_Os12g06260.1, FRAME:+3, EVALUE:6e-85, 13112.m00638 protein harpin-induced protein 1 domain containing protein, expressed





CDS Structure of MLOC_80700






Contig Sequence (3282 bp)

>contig_92299 3282 assembly3_WGSMorex_rbca.fasta
CTACTTTCTCCGATAGAAATCTTGGGATACTCTTTGAAGTTCTTNNNNNNNNNNNNNNNN
NNNNNNATCTAAAATTGTTTGATGCATATCGAATAATTAACCCATGGATACTTAATGTGA
CATTGGAGTATCTAGATGACATTAGGGCTGAACGATGTGTATCATATGTGTTATTTTAGT
ACGAACTCTATGGATGTTTGTGATATTTACAGGAATAAATCAATATATTGGTAGGAAAGA
ATAGCTTTCAGAGGTAGTTCTACTACATACCTACAATGATTTCATCTTATGTTCTCCGCT
ACTTATGAACTTTGGAGTGATTCTTTGGGACACACTGAGGGATGATCATATGATTCNNNN
NNNNNNNNNNNNNNNNNNNNNNNCACTAGTGAAAGTATGAATCCTAGATCTTATTTTCAA
GGATTGCAATACCTTTATATTCTTGTATCACCATCTCTTCGCCGAACTACTGCACATATA
CAATTTCCCATTGTATTGTGTGTTGGGGACACAAGAGATTTTTGTATTTGATTGGACAGT
TGTTTGAGAGAAACCATCTTCATCCTACACTTCCCACAGATTGATAAATCTTAGATCATC
GACTTGAGGGAAAAGTGTTACTATGCTACAAAATTCTGAGTTTGAAGTCCCAGCAAAGTC
AACAAGAATAAAGTTACATAGTAGACATCAACCGCCCGCGCGTTCGCATCAACCACCGCC
ATTTCCTCCGCGAGATAGGCCTCAGCGTCCCTTATCCTCTCCATCCCAGGGCGGGCAGCC
CGTTCCCGGTGGGGCTCGAAGTTCGCAGGACCAGTGATGGGGAAGGAGAGATTTTCCGCC
TGCCGGGACCTCGGTGATCCCGCCTCAGAGGAACCGAGCGCCCGTTGAGAGGACGCAATA
TATGGAGTCGCGGCGGACAGATCTTGCCGTCGGCCGGACGCTGTCTTCGTGGGAGCGATG
GAGTGCAATGCGAACCGCCATTACCTCCTCCAATCCGCAGGGGACGATCCTTTAGTCGAT
GGACCCGAAAAAACCTGTTTGAATGATCGGATTAAATATTGTTTTTATGATGGATCAGTG
ATCGGATCCCAAACATTTGAAACGGATATAATAGACAAGATATAATGGCCCTTCAGCATG
CGCCCGTGGGTATATGGGTATCGGATTTGCAAGTCGGTACTGTAGACGCTGTCAGCTCCG
TGACTCCGTGTAGCCGTGGGTTGTCGGCGCGCACATGCATATATGCACGCCAACGAACGC
GGAACACGTTAACGAATGGGGATATCTCAAGTTTCATGTTGATTTAGCAAGAACGTCATG
TTGATTCTTGGTTCTGCTAGGTGAGATCCTTCCAAGTCGAGTACGTATCTTCACTTTATC
TGTTTACTCACCATTATCACGTACCTTGACCAGTCAACCAAGAGCAGCTTGGACTCATTG
ACCACCTGCCGCGATTTAAGACACATATCAAACCCGAAAATAAAGACATTAAACAAATCG
TCGTTACCCCGCAAAAGAAGAAAACAAACGTTGTTCCGTTACGTCGGAATCGGCGACATG
ATTGGCACCTTCTACTAGTTGTACTTGCACAAATACATGCGCAGTACACATCCAACGAAT
CGAGTCTGCGTTACGTGCCAAAGATTCTGCACTGTCTTGTCTGTGCTCGTATTCTCCTCT
CTTCTCTTTCTCAGGACCCAACGCAACGATTTTGTTTCATAATCCATCGATCGACCCACT
ACGTGCCAACTCTGCTTTTCAATCGTTCCTGTCTGCCTGCGTACAAACCCTATGCTAAGC
TCCAAATAGGTTCAAGGAGCTAAGGAAAAGAAAACACAAAAGTAGGTTTACGTTATGATC
GTCTAACGAGAGTTAGTAGCTAGGCACGTGGTGTTTTTTTTTCTTGAGATGCAGGTAGCT
GAGCAGTCCCCACCATGACCGTGGGATTGAGAGGAGAGGCCAAACCCTAAGCCCAACTTG
TACTCCGTATTGTGTCCAAAACCTCTTATATTACGGGACGGATGGAGTAGACACCACAGC
GCCCGCACCACACCTCCTTTTCCCCTTCCTCACTTAAGAGAATAAGAGCTCATCGGAGAC
ACAAACGCAAACCAACCGATCAAACTGCCAGCTAGCCATGGGCAAGGACTGCGGCAACCA
CGGGGGCGACCACCTCCGGAACGGCTGCCGGCGCCTGCTGGCCGTGACCCTGAGCCTGGC
CTTCACCGTCGCCGTCATCGCCCTCATCGTCTACCTGGTGCTCCGCCCAACCCACCCGCA
CTTCTCCCTCCAGGACGGCTCCCTCCGGCAGCTCGAGCTGTCCAACTCCTCGGGCCTCCT
CTCCACCTCCCTCCAGGTCACCGTCGCCTCCCGCAACCCCAACGACCGCGTCGGTGTCTA
CTACGACCGCCTCCACGTCTACGCCTCCTACAAGTATCAGCAGATCACGGTCGCCGCCTC
GCTCCCGCCGGTCTACCAGGGCCACGGCGACGTCGACGTATGGTCGCCGGTGCTCGACGG
GCCCAACGTCCCCTTGGCACCCTACCTTGCGAGCACCATCTCCCAGGACTGCCTGGCTGG
CCAGCTCATGCTCCATGTCAAGATAGACGGCCGCGTCAGGTGGAAAGTCGGCAGCTGGAT
CTCCGGCCACTACCACCTCTTCGTCACCTGCCAGGCCTTCCTCACCGGCGGCGGCGGCGG
CGGCGGCAACGGCGCATCAGGGGCCAGCGGGTTCAAGTTCCACAAAACCAATGGATGCCG
CGTAGAGGTCTAGTCGCCGGTGAGAGGTTTCTTCTTGGATTGTGTCCATAGTGACCGCAC
AGGCACAGATCGGTGTTAATAATTACTCTATTATGTGTGGTTAATTATAAGTGTAAAGCT
GGGGTGCATGGTTTACCGTTTACGTAGGGCAAGTTAACACGGTGCTTTATATGCCGCCTT
CATAGCAGGTTACTCTTCTGTTACTGTTACACAAAGGTTAATTGTCAATAAATCATTTTT
ATGTCACCCAAAAAAAAAAAAAATTCGTGTGCCACAATTATTAGGAGAAAAAAGTTGCGT
TTTTTGGGTTACTCGCAAAAAAAGGTGCTTTATATGCCGCCTTCATGGCAGGTTACTCTT
CTGGTTTTTTTTTGCGCACAGGGTGATTTTATTCCATAGGTATAGAATTACAATCTTTAG
CAACCAACATGGTGATGCATGGAGGCGGTCTACCCAACCAACAAGCAGTACTATCTCCAC
ATCTATCAAAGTTTGATAAACAATGAGCAACTCTATTTTGTT