| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_92179
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_80687 |
2 |
2213 bp |
MLOC_80687.1 |
Available |
Available |
LOC_Os11g07440.3, FRAME:-1, EVALUE:0.0, 13111.m09204 protein plant neutral invertase domain containing protein, expressed |
| MLOC_80715 |
2 |
5218 bp |
MLOC_80715.2 |
Available |
Available |
LOC_Os06g29430.1, FRAME:+3, EVALUE:0.0, 13106.m03039 protein cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed |
| MLOC_80800 |
2 |
1174 bp |
MLOC_80800.2 |
Available |
Available |
LOC_Os07g40250.1, FRAME:-3, EVALUE:4e-114, 13107.m04182 protein sex determination protein tasselseed-2, putative, expressed |
CDS Structure of MLOC_80687
CDS Structure of MLOC_80715
CDS Structure of MLOC_80800
Contig Sequence (7656 bp)
>contig_92179 7656 assembly3_WGSMorex_rbca.fasta
TTTGGTACAACCGGCGTTTGACTTTTGCTACCACGCATCATCTTTTTCGTTTTTTTGCTA
CGATCACGTAGATATTTTTTTTGCTACAATTTTTTTTTTGTTGCAACAGTTTACGAAAAT
TACTGCATAGCGTCGAAAATTATTGCATCGAAGAGAAAAATATTGCATGTCCCGCCTACT
GACAGATCGGGCAGCTCGCGCGCAACCGGCCGAATCTTCCGGCCTGCGCGCCGGCGCAGA
GCATCGCCCCAAAAATAATATGTAAAGCCTATCTATGCCATGGAGGACGAGCAAGTGTGA
CTACAGCTCGTGTACGTACGTGGTGACCTCGCTGGGAAGGAAGGCATGGCCATGAAACAT
GTTTAGGGAGGCCGCCATCGGCGTCGTCGTCGTTCACCTCGTCGTGGAAGGCACGCCCTG
ACATGTTCCTCGTCTCTTCTTTGGAGTGGCGGGACACTGACCGCACCGCTCTGCGCCTCG
TGTCGACCTCGACCAGCCACACCGTGTTGTCTCCCCCGGCTTCGATGCCAGCGTGGCGTC
CCTGGCTCACCAGTCACCATGAAGCACAGGGCGTCGGGGTCGACCATGCTCACGACGGTG
TACTCCGGCGGGAACACACGGGAGGTGCTCGTAGCCGGAGAAGGCCCAGAGCTCGGCGGC
ACGGAAGTCGACGTCCTTCTCCCACTTCATGCTGCCGTCCCGCGCCTTGCCCAGTGTCCA
GATGGTGAAGGTGAAGACGAACAGAAGGCCGCGATCGACGCTGACGAACTTCACCGTGTC
GCCGGCGGTGACGCAGACGCTCCGCGACGCCTCGGGGCACTCCTGGCCGTGGTCGGGTTT
CGCCCAAGGGTGTCGACGTGCAGCGGCACGTACGTGAGCGCGGAGCCGCCGTCAGCGAAC
ACGCGGCCGACCAGCATGCCACGGTAACAGTCCACCCAGCACAGGAACCGGCCGCCGACG
GGCACGGCGGCATCCGTCTCCCAGCACTGCAGCGTCATGTCCTTGCCCCTGCCGTCGCGG
ACCTTCACGTGCCTCAACTCCCACTTGTCAGACTCGGACGGCCCCGGGCCCAGCGAGAGC
AGCACGCAGAGCTCGAACGCCACCAGCCGTGCGGAGCTCGGCCACGGCGAACGCGCCCTC
GCCGCGGCGGCGCAGGATGCCGATGGCCTTCCTGGTGAGCGCGGAGTTGGGAGCAGCGAC
AGAGACGGCGGCTGGACGGCCCTTGCCTTGTAGACCAAGTAGTCGATGCTGCGGGAGGAC
ACGGTCAGCTGGAGGAGCACGCGCGGAGTCCTCGTGAGCGGCGACGACCCGGGGGTACGC
GAAAGACAGGTCCTCCTTGCTGGGTCCCCCGGCCAACGATTCCAACAAAAAACAAAATTT
ATAACAAAAAATATATCTACGTAATCGTAACAAAAAAAAGAAGTTGATAGTGCGTGGTAG
CAAAAGTCAAATGTCGGTTGTAACAAATATCTACACGAACGTGTTTTTTAGTGAATGGTT
GCAGCAAAGAATGATGCCGATTGTAGCAAAAGTAAAAAAACATCAATTGTAACGAAAAAT
ATGACGAACAGAAGTTACAACCAAACGTATATGCAGCAAATATGACGCTGGTTGCAACAA
ATTTACACGAGAAAAAAAACTGCATGAAAAACGTTTGTATAAAATAAACACGGTTGCAGC
AAATTTAACGAAAAAATGTTGCAAGCATCTATCAGCGGGGCGCGCGACCGGCCGAACGAT
TTGGCCGGCGCGTCGGATGAAAGCGTTTACCTTTTCCTTTTCGGCTTTGCTAAAAATCTG
TCGACTGAGATCAGTCGATACTATAATGCGTTGATTTTGCATTGAGATTCGTGCAGACAA
TTTTTTTCAGTTTTTCTTTTTCGCATACTATACTATTTGAAGTTTCAGTCGACTAAAGAC
ATAGACACACCCCTTTCTTTTCTTGAGCTCACAAGGTTCCATTATAAGGAGAGGACGTAA
GAAACTGAACTGCACCTGGACTCTAAAAGGGACTCTACCTCCGGTTTATACTCTGACTGA
AAACTACCCAAATTACTCTAGCTTTTATGGATGAGCAAGCCGACTTACGAAGTGCTCCTA
GTTCAACATTCTAACCGACTTGACGAACTACTACTCTACTTGTTTATGATGCGTCAGTCC
AGATTGCGTGCATGCATGTTTTCAGCATGTGGTCAATGCAATTTGATGTCCCTTCAAGTT
CAATCAATCAAGTAAAGTAGTAAAACAAACTTTCTTCAGAAACATCTAACCGACTTGAAC
GTACCGCCTTAATGCCTTGATCCAGAAGACCGGAACACGTGCATGTTTCCACTTTCGGTC
AATGGAATTTGATACTTGGTTCATTTATTTTGTTGATAATTCATAATGATTTTGCATTAA
GATTTCACTAGTGGACTATATACGAATGTATATAGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTGCTCCGTATGTAGACATCTAATGAAATCGCTTAAAAGACTTNNATTTAGGAACA
GAGGGAGTATATTCTCTGCGTTTCATATTAAGTGTCGCTGGTTTAGTATAACTTTGTACT
AAAATCAGCGACACTTATTATAGAATGAGGGGGTACTTGGTTATTGCAACTATCTGAGGT
GCCACTGGTACAAAATAAACATATTATTCCGAAACTGAGGTATCACCAAAGCACAAGCTT
GACTTGCTGTTTTCGACAAAAGGAAAATGTAGTGCGACTTCTAGTTGCATCTACGGTATA
CACTTCTGTCGAAACTGACAGAGTACAATTACAACCAACTCCGGACGCTTTTTTCTGTTC
AACCCTTGGCAAGTAAATTCTTTTTTGGAGGAACAACCACCCAACCTTTCTTCAGGCATT
CCATGACGCCGACCGCCTCATTGTCGGCTTCACCGGCCGGTCCTCCTCCATTGTGATCAT
CAGGAGCGTTGAAGGGTCCTCCAGCATCATCCGCGCGACGAGGTAGCCAGCAATGGACCA
TGTCTGGAACTTCCTGGCCTGCTTGCCGACGAACTTTCCCAGCTTGCCATCGTAGTACTC
GGGCCAGCCGTCCTTGAGGAGTCTTGCCTCGGAGAGCTCGATGGCGCGCTTCGCCATTTG
TGGCCGCCCGGTCTTGATGCAGGCTGCTGTCAGCAGCCATAGAAGAACTGCAGATGAAAC
ATGTGAGAATGTTAAAATTCGTAGGCTTCCACGGATCCCAAGATTGGGTTGTGGGCTTGT
GGCTTTGCTTCGTGTATGACTAGAAGCAGTCCCCACTCCTCAACCAGAACAATTACACGC
AAAAAAGAAGAAGCAGAACAACGATTGAGCATACAGACCCACGTCTCCACTCCTCAAGTG
ATAAGGAAGCATTGACATAACTCCCCCCAGCAACCAGAAGAAAGCAGATCAAGGGTTCAC
AGAGATTTAAAATCATTTTCTCCTGACAAAACTATGTTGCCGTTTGTAGCGCAAGACACG
GTAAAGTTCAGAATGAAGTTTATTCTAACCATTTATTACTGTTTTATAATTATTATTATA
GTTGTAGTCTTCATTCAGAAAAAAATGTTTCACTTTAGATAATAACAGTTTTTACGAACA
AGAATATTTAGCAGCAAAGAATGCTTACTAAAATAATCCAGAAAATGGTATAAAGTAAAT
TACCTGGCCATGATCCTCCATTATGATAACTCCACCGGGTATTCTTGGGGTCGCAGCCAG
TAATTATTCTCCATTCATGGTTCTCAAGTGCAGGATATACTATCTTCAGAGGCACCTCGC
CCACTAGCTCATCCCACCTCTCCTCGATCAGGTCCATTATTGCCGATGACTGCTCCGGAG
TAGCTAGAGATGATATAATGGCAATACAGTTTCCAAGAGCAAACCACCTGAAGTCCATCA
TAGCAGGGCTGACATTGCCAAGAAAGTAGCCTCCCTTGCATGGCATGAAATCAAACACCC
AATCAGGAATTGAATCCGGGATGACATTGAATTTGTTCACAGCAGTGTGGGAGTACTCTT
CTGTTTTGTATCTATATATGTTATTTAGATGTGGGAAATCAAGCCAGAAGTAATTTCGCA
TGTGATAGGTTAATGCATGTAGTCGCTGCCCTATCTTCTCTATGAAGTCTTTCCCTTCAC
CATCCGGCTTGAGCATTTGGAGAGCACATCTTAATGCCATGTAGAAGAGAGCTTGGATCT
CAATAGGATAACCATATATACCCTGAAATTATAGATTAACATTAAAATCATGTAACGATA
AGGATGTTCACCTCCGTTTGAAATTGTAAATCGAGAGTTGAACAAGGAACCAGGAAACTA
TTAGGATTACATTTCAGAATACCGATTGCCTTTTTCAAGTATGCTGTAACTCAAAGGTCG
TACAAGCAGCACAAAAAAAATTAGGATTCTATTTCAGAATACATATCATTTTTTTCAAGT
ATTACCTTTTCTTGTGCTAAAATTAATCATACTTCCTACTTACGGGAAGATGTATGATAC
TGACAAATGAATTAGCATTATCAGTCAAAGTGTGTTAACTGAAGATGTCTCTTTTCAAAA
TTTACTGTCCGGGATAAATAAATGTTCCTTTTGGTTGTACATTAAAATGCAGAACCATTC
CTGTTCCCCTTGCCACCTCAATTGCATTGTGCTGCTTTTAAGTAAATAAAGTAGTTCTGA
ATCTAAATCAAATAAAGGCGAAATGGCTGTACCATCCGACGATCAATCATTGAGCAACCA
TCAGTGCAGAGCAGAGTTGGGAAAGTATCGAATCCCTCAGATAAGCAAAGACTCAGTATA
AGCCGCATGCACTTCTGACAATCAGGTGATTCTGACAAACTAACATCTCCAGTGTACTTT
GTATATGCCCGAAGGAGAATAATCCACCAAAATCCAGAGTCCACTGGTGCCACCCTGCCA
ATTGCGCTCTCACCAAAATCTGCAACTAATGTTTCAGTGTTCCTGTTTACATTACGGTCC
ACCTTGAAACTTGCAGGCATTGCTCCTGCTCCTAGCTTGAACCGGTCTACCATTTTTTCT
GAGCTTTGCAAGTGGAGAGTTCTCAAGAGGAAGTTCTTCACTATTTCAGGCTCGTTGTTC
ATTAGGAAAGCCAATGCACTAGGAACAAAATCCCGTACAAAAACCTGCAGTTGTAAGGAT
AAAATCAACAACGGTACAACATCAGATATTAATTATTTTAGGGAAAGTAATAAAAAATGC
AAGAGAACGATGAATGTGAAGCAAGCAGAGTACCCAAAGCCATAGTGCACATGAAAATTA
TATTACGATGGGAAATTGCACCAATTATTTTCAGATATTACAGGACACAAGTGAATACTT
TGTATTTCATCAGTTTATAATTGAGAGTATCCTCAACCGGCCATATAATAAATGTAGCGT
CATCCTTGTTACTCCCTCCGTTTCAAAATAGTTGAAGTTGTAGATTTATCCTAAATAAGT
AAAATTTGTTTAACTTTGACCAACTCTATAGAAAAACATGCAAAGATCTACAACACCACA
TCATCATAGTTCAAAAAATATTGTATAAAGAATATCATGAGAGTAATTTCGTGTTCCAGA
TGTTAACATATTTTCCCATATAGTTGGTAAACTTAAATTATTTTGGAATGGAGGGAGTAT
ACTAGGTAATTGGATAATTTTTATTGCTGATTTAGACATGTCTAAATTTCAGAACCTAAG
AAATAAAGAATAATCTGTTTTCATATATGAGACCAATGAATTTTACCTGATCATAATTGA
GCACCTCCTCAGATGCATGATCTACCGCAGCAACAGTACCCACAGGTTGGCCACGAAAAT
GCACTACGGATTTCCTGAGTGCCTCCCATGCCTCATTCACAAGGGGGTGCGGTCCACTTG
GCTCACCGAAGTGTGTTCCGGTTGAGAATGGTGACTCAAAACCATTGCGGAATGCAGGTG
ATTGCGCCACACTATCAAAGCCATCATTATGCCGATGTGAGAGCTCGCTCCATGACTGTT
CATCAAATGACCTCTTACGCTCCAGTGTGAACTTTGGCTTGTCAATTAGTAAGCGCGAGA
GATCAAAATTGATCTCTGCCTCTGAGGCAATGGAGACATGCGATGACACTCTCTTCATTA
TACCCTGCTTTGGTCAACTATTACTCAAATGAACTCCTACAAGGGAATACAATATCAGTT
CAGGTTCAAACCCCTGCCATAGTGAGGATGACTAAGGTGCAGAGAGTTATTCCATTGCAG
TAGAAAGCCAGTTCATAAACAGATTTATGGCGTATGTACAGTATTACTGGTAGTTCAGAC
ATGCGTTCAAGTATTACCAGTATCAAAAAAACAGTGGACTAATAATACTGGTAAATATTA
GAATTACACTAAGCAACTAAATTACCTACTAGTCAAGCAATGTACAGTATGTGATTGGCA
GAAATCAGTGCCTCAAAGATTAAGGGGTGCGTATGTACACCGGCCAACGGAAATCAAGAA
CCGGTGCTAGTGCATAGAGAAGTACGCAGCAGCATAGTTATTATAAACTATACGGAACGG
CGCCAACAGCCACAAGACTTCGATGAAATCAGAGCCTGCAGAGGGCAGCGCTGACGCAAC
CAACTAGGGCGACCGACAGAGCCAACCACAATGCCGGATCTGAATCTAGAGGGGTGAAGA
GCTCGCAACCTTTTCCTTTTATATAGTATAAAAAAAAGGATTGGCCCAGTCAGCTGGAAA
GCTCAGTAATAACATGTAAGGAACTAATTCTGTCGCCGTCCCTCTAAGGCAACGTCAGGT
GCGATTTGGAAAGCTCAGTAATAATTCAGAGAAATATATCCCCCCGCCTCCTCTCGTAAT
TCAGTATGGCATCCCCCGTGACTGGGAAGGTTGTGTTGTTTCAGGAAAGTTGTAGGGATT
TTGCTACACGACGGACGGAAAGGAAGCGCGGCAGCAGAGCAGATTAGAATCGACGCGGAC
AGCCAGCTCCAGCGACTCATCAGCTGTGTCTGCTCCAAGGACGGCTCGCTACCGATTTGG
TGCGGCATCTGAAACCGAAACCCGGCCCACTGGGGCGGCGACCCAGATCCAAGGCTGGAC
GGAAACAGGCAGTCAACCACATCGATCAAACTCCTACCGAACCAGATCCGTGCACCAGAG
CAGCACGGAACCGATCGCCGGGGCGGGGAGGATCGGAGCCGGGGAATCGGCGAGGGAGAA
GGACGTACGCACCGTGCGGGGGAGCAGTCGTCGTCGTCGCCGGGCCGGACCGGGCAGGAG
GAGGAGGAGGAGGAGGCGGGGTAGTGGGGGTGGAGTGCGCGGGCGCGGGCAGGAGGCGCC
ATGTTGAGCCGGAGGCGGGTGTATTTATAGGGGCGGGCGCCAAATGCTCCTACCTTGTTG
CTGCCGGACTGCCGGTGTTCGAAAATTTCCCCTGGGCTGGTTGCGCTGATCGTACTCCTC
CTGCCTTGTTGCTTCGGCTTTGGCTTCTTCTCTCTTCTTTTTTAAGGTCCTGTTTGAAAA
CACCTAGATTATATAATTCAGTTTTTATAATCTATTTTATTTTCAAACAGGACAACTTAT
GTTGTAGATTATAAATACTAGATGGATAGATTATTAAAAACTTACAATCTACTCTATAAC
AGCTAAAATCAGATTATCTATACTACTAATAAAAGA
