morexGenes - Barley RNA-seq Database

Contig contig_9154

Source Contig contig_9154

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_9154 (1639 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_9154

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_80597	2	1134 bp	MLOC_80597.2	Available	Available	LOC_Os08g08210.1, FRAME:-3, EVALUE:0.0, 13108.m00851 protein SET domain containing protein, expressed

CDS Structure of MLOC_80597

Contig Sequence (1639 bp)

>contig_9154 1639 assembly3_WGSMorex_rbca.fasta
TAGCGGTCAGGTTATATTGAGGGTTCAGTTGCGCAGTGCATTAATGAACTGAGCTCACGC
CGAGGAGCGCGTGGGTGGGGGAGGGGGGGTGGGGGGGGGGGTGACTGTACAACCTGTCAT
CTAAAACCTATCTCCCATGATTAGGTAGGTAAGGTGAGTAGGGGAAAAAGAATGTCGTTG
ACTAAAATCTCAGAAGAGAAAAAACAATGCCCTCTGCCTACAATCCTTTTGACTACCCTA
GAAAAACGTTAGATCTTGTCTTGAGCCAATGCACCATCTCCTTGTCAAGAGGAGAATTGT
TATTTAACACAGCATCCATCATTGGAGTGCCAAAGAATCTTGGGTCGCTCTTGAACACCC
ATATCCGGTCCTTCGGCCATGGACGTTGGGCCTGTTTCTCCTGTTATCAACCATTAACAA
CGTCATTATATTTGTGACACTAAATAAGTCAAACAACAACACCCAGTAGAAAACACGCCA
TCAGACAATCTGGTCAAGATGACAAATAACAAAACAAATATTCCTAATAAAAGTGTAATG
TATCCAACTGAACGAATTTATGCAAGGAAAACACTAGGGGGTGAAAGTTTACAAAGCTTG
ACTTAAGACAAAGCTAATATGCAGACTAAGTAAAATGGAGTACAGTATATGAAAAATGGC
TAAAATGATGTAAACATATTCTGAAAATATCGTAATCTCAGCTGCTCAAGAAGTAGCACT
TACCATCCGTGATAACATGAATCTCACAGTTCTGGTGCCATACACTCGCTCTTGTGTTGG
CTTTACAGACTTTACATAGAAAGAGGAGACATCTGGTAATGACATACAACCCTTTCTAGC
TCTTGTCAGTCTAGATTCGGGTTCTGCATTCTGGCTGTACCAATAGATGAGCTGGGCTAA
GCAATAGTTCTCTGGGTACGTCTTGCTGTACTCCTGGAAACCTGGTCCCAGTTTATCAGC
ATATTTGGGACCTAAATCAAGAGGACTGATATGAACTGGTGGAGATTTTACTGGCTTGTA
GTCCTATACATGGTGTTAGTTGGGTCAGCTTCAATTACAGATAAAGAAAATCACAAGCAT
TTGTTTAACGACTGAGAGAAGGCAGAAAGCTTTCACTTACTCGGGCTCTGAAAAAACACT
TTGTGTAAGCATACATGTGAATCAAATCAGCAGCAGCATCATGACGGCACTTGTATGTGC
ATGAAAGAGTTCGCAACTCATCACGCAGCCTGTAGAAGGGAGTCAGAATCCAAATTTGGA
TAATTAGAGCTGAGGAGAGTCAGATTCCAAGCATACCATAACAGAGAATTTCGGATGTCT
CCCTCGATGTCTTCAGAATCAGATGGATCATGAAGCCGAATTTTGTCCTTGAGGTCAGTA
AGTACATCTTCGTCAACATGATGTTCAATTGACTGAAGGAGCTCATCAACTAATGAGCCT
TCCCCTTTCCAGATGGCAGACACTAGACTTCTCCCAGTAAGCCTCACCAGAGGAGGGGGT
GCATTCTTGGGGTCCCCAAATATACATCTCATAACATACCTTACCTAAAGATAACATATC
ATCAAAAATTCAATAGAAAGATCAAGCAAACAGATCCTCTTTGGGTTTATCGATGATAAT
ATATATATATATATATATA