morexGenes - Barley RNA-seq Database

Contig contig_91427

Source Contig contig_91427

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_91427 (2653 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_91427

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_80571	3	1373 bp	MLOC_80571.3	Available	Available	LOC_Os03g60509.2, FRAME:-3, EVALUE:1e-104, 13103.m06636 protein expressed protein

CDS Structure of MLOC_80571

Contig Sequence (2653 bp)

>contig_91427 2653 assembly3_WGSMorex_rbca.fasta
GCTTTATTATTAGGGAGAGATATCATTTGCCACCTTGTGGGGCTTATGGCTGTTTCGCAA
TGAATTTGTCTTTCAGGGAAGGAGATGACGAAACATGCGATGTATAATGGATCTAATGGG
GGCTTTTGTAAGGCAATGAAAAGTGGATGCCCTTCTTCTCCGATGTTTAAGGCTTCTGGA
CCATCAAAGAGGAGTTACTTTGTAATAGGGCTTAAAACTAGCTGTATGTTGTCCGTTTGT
TTCTGTGATGGCCACTCAGACAGTCCGTCTACTTTTGGTTAGTATGCTTTGTCTTGACTT
TAATAAAGTTGGGGCTGAGGAAGACTCCTCTCGTTTAAAAGAAATCCATATATATATATG
GCCGGTTTAGTTCATGTAAGATAAAAACCGAAGATACACTTCAACACGAATCAACTGTGA
CGGAAACATCAAAATGAACACCATAAACCAGGAATATCAGTCAACTCGGTTAGGTTCCGT
TTGATGTTTGGATTTTCGGTGTAAAAGTTAGCACCTCTAACTGTAATATCATGCGTAAAA
AAAGACTCGACTCATGATCCATGACCGAGAAACTGCACGACGAAGCGCGAATCCAAGATG
TAAGGAACGGCATACTTCTTTATTAATTCAAATCCAAGTAAATCATCATCAGAATCATAG
TTATCCATGGTTGCATGCGCATGGAAGAAAACACGACGTCCCACCACGGACACTACCAGC
CACACGACGCGAGCAACCAGTGACGGCGCCGCATTGCCCCGGCCGGTTCGTTCACACCGA
AACCGGCACGGGCTCCGCGGCCGGCTCGCCGCCGGCGTGTGCGGCCCCCTTCAGCAGCTC
AGCGACCCTGTTGGCCAGGCTGAGCTTGGCCGCCGGCGACACCCCGTGCTCGCCGATGAT
GGACTCCAGCACGGCCTCGCAGAGCCTGGCGTTCTCGATGGCCACGCCGCCGGACTCCGG
CACCGACGAGTCCTTGGAGAAGGCGACGGTGAGCACGCCGGCGGGGGAGTGCGTGAAGAG
TATGGAGGCGCCGGGGGCGAAGCTGTGGGGCCCGAAGGCCTCCTTGAACTTGTCGACGGC
GGCGGCCTCAGCGTCCGTGTACACGCCGGCGGCCTTCCAGTACGCGACACAGTTCTCCGT
CACCTTGTCCGAGTACTGCGCGCCCGTCAGCGGCAGGATCATTGTCACCCTCGTGAACTT
CTCGAACTCGCCTGCACCGCCGGCCATTGGTTACTGCCTTATCCTGGTTGTAGCAGCGTG
CACGTGGAAGTGTGTATGTGAATTAAGTTACCGGTGACGACGTCGCGGAAGAAGGCGGCG
TCGGAGGCGAGATCGGCGGCGGGCTTGCCGGCCCACTTGGCGGCGAGCGCGGAGACGGCG
GCGTCGGCCTGCAGGTACACGCCGATGGCCGTGAACTTGATGAAGTGGCCGCCGATCTCC
ATCCCGCGCACGCCTGCGCAACTCGAGGGCAGAGCACACACAGTTCGGTAACAATCCATC
TCAACAGGAAATATACTCCGTTAAAACGGCATCTGGAGCCGAAGTCCCCGGAGCCGTTGA
GGGGATGGATCACCTGCGCCGGCGAGGAAGTGGGCGTGGGCGGAGCCCGGCGGGCGGGCG
AGCGGCGGGAAGACGACGCCGTCGACCTCCAGCTCCGACACGGCCATGGTATGTGTATCG
ACGGACGGATGGCACGTAGCGAGCAGACGATGGGGGCAGGGGTAGGTGGGTGCGATCTAG
CGAGGCGTGGGCGCACGGGATGGTTAGCTGGGGTGGTGGTGCCCTCGGGTATATGACGCC
CCAACTGCTAGGTAAATGCCCGTCGACTCTGCCCGTAATTGCGGTTTTGCCACGCCCGTG
ATCTGCGGCTGGAGCAGGGGGGCGTGGCAAACATGTAGTTTGTGGGCGTATCTGGGGGCG
TGGATAGTGGTAGTTGGCGGAGGCACGTTGTGGGGGGAAAGAGAGGACGTGGCCGCGCGG
CAGGTGTTGCGGCGGGGTCAAGCTACCATTCAGCCCACGTACGGGTCCGGATCACACACA
CTCGTGGTGGCCGCAGCAGGGTCTGCCGGTCTGGTAAAGGAAAGGAACCCAACGTCGAAT
GATGGTGTGTTAATGGGTTTTATTTTTTTATTTTTTTCAACATTTTTTAATATGCAACTG
GGTCCCGTGCACAGGTAGCATCAACTGTTCCTGTGCACCAGATACGTCCTCCAATGCATA
TATCCCTATGAAATTCAAACATGTCAGATAAACACCTTGTACTAAGAGCTAAGAGGGATA
TCTATAAATCCTGGATGGGAAAGCTCCCATTGATAGAAAAAAGAAGGGCAGTGCTCTGCG
CCGGCGCGACTTTCGGCCGACCACGCGCGAGCCGCATGATCCATCAATTTCCGCGCGTCC
GCATCGTTGGATCTCCATGCAACATTTTTTCTCCCGATGCAGCAAAATTCACCGTGATGC
AGCAATTTTTCAACGGTTGCAACAAAAAATAAAATTTGTAGCAAAAAGAATACCTACGTG
ATCGTAGCAAAAAAACAAAGTTGATGGTGCGTGGTAGCAAAAGTCAAACGCGGTTGCAAT
AAATATCTACATGAACGTGTATGCAACTTTTTTAGTAAACGGTTGCAACAAAAAATGATG
CCGGTTGTAGCAA