Contig Data
morexGenes
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Map Locations of contig_9078 (3433 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_9078

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_80490 1 2027 bp MLOC_80490.1 Available Available LOC_Os10g07310.1, FRAME:+3, EVALUE:7e-51, 13110.m00649 protein retrotransposon protein, putative, unclassified





CDS Structure of MLOC_80490






Contig Sequence (3433 bp)

>contig_9078 3433 assembly3_WGSMorex_rbca.fasta
AGCCACTAGTGAAACCTACGCCCCTGCGGGTCTATTTCACATCATCTATTTGCAATCTCT
ACGTTGCTATTTGCTTTTCTACTTTATTTGTTATTTTGTTTTCAGATCTATATTATCACA
AAACCCAAAAATATATTGTTGTGTTCCATTTGCTATCACTCTTAGTTGCATCTATCAATC
TATCCTTNNNTTACCCATGAGGGATTGACAAACCCTTTACGCGTTGGGTTGCAAGGATTT
GCCATTTGTGTGTAGGGGTTGCTTACATAGTCTTGTGGATCTTCCTACTGAATTGATACC
TTGGTCCCTTATCCCTTAACCGAGTTAAATATTTACCGTCGTTGTGCTACATCACCCTNN
NNNCTTGGAGGGAGACCAACACACTCGCGAGGAGTCAACAAGATTTCTCGTGCCGTTGCC
GAAGAAGATCAAGTAAGGATCTATCAGGTTCCTACATACAAATCGCATCTCCTTGCAATT
ACATTATTTGCCATTTACCTCTCGTTTTTCTTTCGCCCACTTGACACAAATTTGCCTTTT
TATCTTGACATGCTTTTGTATGTATTTGAAATTTCTAGTATGAGGTATCCGGGGAAGGAC
CAAAAAAAATAAAAAAACAGACGTTTGAGGGTCTGAAAGCGGAACCTTAGTTATGTGTCC
GCATGGAAGGTGTCTCTCTTGCTTTGCAATGGTGTGAAGTGACGGTGATCATCGAAGTAG
ATGCCTCTGGTGCTGGAGGTGGTGTATATGATTCAGAATAGCGACAGTGAGAGGTCTATA
TACGCTTCTTTAGTGCTTGAGATCAAGACACTAATGTCCTCTCGTCAGACTTTGTACTAC
TCATGTAAACCGTAGTCGGAACACGGTTAAACACTCATTAACAAATTATGCTCGTGTTGA
GGGTAAAACTGTTGTTTGGCTTAGATCTGATCCCACTAAGACTGTCGATCTTTGTAACGA
AGAATGTAAGCCCGGCAGTGATTAAGTAATACAAAGTTCGCCCACAAAAAGAACCCAATA
CAAGAGAAGATAGGCACCACACAAAACAATAAAACAATCTATACCAAGAAAAAGAAAATA
ACAGTAAAACACCACCAGTCCACCACCAAACTACATCATGCCGAACAGAGCCAGTTGTGT
AAAAAAATTCTTCACGCGTGACAAGGACATCGATGATGCCTTTCTCAAAGATCAAAAGTA
ATTAGAATTCTCTCATTCTTTAGCTCATCAAAATTTTGACATGGCAGTTCTTCAAGTCTT
ATTGTTGTGTTGGAAGCCTGTCTTCAAATACTCTCTCCTTAGCCTTGTCAGCCTGAAAAT
AGACAAAATATTACTTATATATACTCGTACATCATAGTCCACAAGTATGACTTCAAAGCA
ATATACTACGTAGAAAACAAGCATCCAAGCCAATCTGATCCAATCCTTATGAAGTATGAC
CGGTTTCTTTCGCATAACCTCAGTCACACCGATATACAACCTCCATTTTCTTCTTAACAT
AAATTATCAGTGCTGGTCAGTTCATTAAGCACACATCCATCAAAGCGAGGGCGACGGCCT
GTGAAAACAAAATAACATGAACATGCACCTGCGGCCTAGCAACCCCGTGAACTTAAACCA
GGTATATATCCTAGATAAAGCTCAAACGGCCGGCCACCTCATCCCTGGTGGAGGGGTCAC
CCATATTCAATATAGGGATGATGACATGATCATAGTTGAGGGTTGTTCCTCCTTTTGTGC
TTCAAAGCAATGTCTGGCCCGAAAATAATTTTCGATAAAAGTGAGGTTTTCATCCTCGGC
TACCCGATGGAGGACCAACGCCAGATTGCAGATAACCTAAACTGCAAGTTATCGGCGTTT
CCCACAACTTATTTGGCATGCCGTTAGCCGAGGCGAAGATCCTGGCGAGTGGATTTGGCC
CCTTAGTGGGCCGGGTCGCTTCTCGAGCCGAGCCGTGGCGAGGAGGGTTTACCTCCAAGG
GGACTAAAACGATGCTCATTAGTGCGAATCTGACGAATCTCCCCATGTATATGATGGGGT
TGCACCTTCTGCCGGAGAGCGTTCATAGCTCATTCGACAAGGAACTCGCCGGGTTCTTCT
GGCAGGCTTCTGATGGTCGCCAGAAATACCACATGGTCAAGTAGGCAGATATTTGCCTGC
CCAAGGACCGTGATGGGTTGGGGATCACGGCCTCCCGCTCTATGAATACCGCCCTCATGC
TCCGGTGGGTTTGGCAGATCCTTCGTCGCGACGGTGGTTTATGGCTAAAGCTCCTCCAGG
CAAAATACCTAAGGGGTGAGCCACTCCTTTCTTGTTCTCGTGCGGGTGGGTCCCAATTCT
GGCGCGCAATCCAAAAGATCAAGGAGGAAATTCGCTTAGGAATCTCCTTCTCTATAGGTA
ATGGGGAGGGGACCCAGTTTTGGCTGGATGGGTTGGAAATGAGGCGCTTAGGGTGGAGTT
CCCCGTCCTGTTCTCCATCTGTGACAACCCATACCTCCTCTGTCTTTGCGGCTACCCGCC
AAGGGCAATGGAACATTAGGTTCAGACGCTCTTTCGGACAGGTCGAAACGGCTGAGTGGA
ACCGCCTGCTTGATGCCCTGCCTTAGGCACTGCCGAACTATCCGGACAAAGTGGCCTGAC
GCCTCTCCCCGTCTAAGGTGTTCTCGGTCAGCTCGGCATATCAGGCTCTATGTCGCTCCC
CCATCATCCCTTGGCTCACACCTGACACCTCTATGGAAGGCACCCCTATCCCTGAAGATC
AAAATCTTTGTATGGCAGTTACTTCGTAATCAGCACCCTTCAGGGACGGAGGTGCGAAAC
TAGCATGGCCCGGGGGACGGCTTGTGCCCCTTATGCTCGGTACCGAAGACTACGACTCAC
ATTATTTTCTGCTGCTCGGAGGTTCGGGAATTCATGCGCGAGGCTCTTGGGAACGATTGG
GAGGCCCAAGACCTCACGGAGTTCCTCCAGAACAGGGCTACCCAAACTGGTCGCTGCCGC
CGCTTATTTTGGCTAATATTTGCCGCGATGTCGTGGACCCTTTGGACCACCTGTAATAAG
ATGGTGATCAAGAAGATTTTCCCGAGGCAGGCGTCTGACTCCTTCAAACTCCTTGCTTTT
ATGCAGCATTGGCATCCGCTCTCTAGGAAGCGAGACCGGGATCGTCTTGATGGCTTGCTG
GATGCTCTTCGGGCTACGGCGCGTCGTCTGGCCTCTCAGTAGGATCGAGGGCCCCCGCCA
CTAGGCGGCTTTTTTCTTATTTCTTTTTCTTTCTTTGGGCGGAAGTGTGCCGGTGCCCAG
GCTGCCTTATGCAGTTGAACTTGATCGTTGGTTGTTTGGACCGTTGCTTTATCTATAAAG
CGGGGCAAAAGCCTATTTCAAGGAGGTCGCTTCAGAGTTTGAATTTTGTTTCAACCACGT
CCCCCCCCCCCCC