morexGenes - Barley RNA-seq Database

Contig contig_90552
Source Contig contig_90552
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_90552 (7657 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_90552

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_80446	1	289 bp	MLOC_80446.1	Available	Available	LOC_Os01g72500.1, FRAME:+1, EVALUE:2e-23, 13101.m07901 protein retrotransposon protein, putative, unclassified, expressed
MLOC_80447	2	2422 bp	AK360748	Available	Available	None
CDS Structure of MLOC_80446

CDS Structure of MLOC_80447

Contig Sequence (7657 bp)

>contig_90552 7657 assembly3_WGSMorex_rbca.fasta
TTGGCAATGGAACCCCTGCACAGAATCTTCGACTTAGCAACCGAGAATGGGCTTCTATCG
CCGATAAGAGGACGGGCAGCCACAATGAGAACATCACTATATGCCGACGACCTGGCACTT
TTTGTGAACCTAGTTCAAGAAGATATGAAAATGGTTGGGATAATCTTACAACTATTTCAA
GAGGTAACCGGTCTTCGCACAAATTTTGCAAAGAGTGTTGCACTGCCAATCCGATGCGAT
GGAATCGATCTACAAAATGTGTCACTGCCGCTGGGAGTACCAGTGGGCACATTCCCCTCG
ACCTACCTTGGAATGATGCTCTCTATCAAAAAGTTATAGAAAATTAACTATCTCAATATC
ATGTCCAAGGTCGACAACAAAATGGCAGGATGGAAAGGCAAGCTCATGTCAAAGGGAGAC
ATGCTAATCCTTGCAAGGGCGGTGCTTCAATCGTTGCTTGTGTACATGCTCTCATCCCAT
AAACCTCCAAAATGGCTGCTCAAATGGATAGACCAGCGCACTAGGGTCTGGTTCTGGTGT
GCAGAAGATAAGTGCAATGGAGGAAAGTGTAGAGTCAGATGGACCATAGTATGCCGCCCA
ATGCGGCTTGGGGGGCTTGGCCTACATGACATGGAAAAGTTCGCTAGGGCCCTAAGACTA
AGATGGATCTGGCTGCGTTGGACGGACGCCAATCTGCCTATTATTGGGGCGGGAGGACCA
TGTGATGATACGGATTTTGCGATATTCGCTGGTGCTACCAGAATTTGTATAGGTGATGAA
AAAACTGCGCTTTTTTGGAAAGATGCCTGGCTGCACGGCATGGCACCAAGGGATATTGCG
CCCACCCTATTTCAGGGATCATCCAGGAAGGGAAGAACAATACATGATGCGCTGTCGCGA
GACAATTGGATACAGGACCTTCAGCGCAACTCGCGAGATGATATGACTGACGAACTTATT
CACCTCTCCGACATGCTGAGCCACACACATCTGACAACGGCGGAAAGAGACTCCATTACA
TGGAAGTTGACTAATGATGGTACATACTCTGCCCGCTCCGCCTATAACTTCCAATTCGAA
GGTCTGGTCAGCTCCGACATGTACACTGCGGTCTGGAGATCATGGGCACCTACCAAGTGA
CAAAATATTTCTGTGGATGGCACTCCAATGCAAGATCCTCACTGCAGACGTACTGCTTTC
GCGAGGTTGGGACAACAACTATTTCTGCCCCCTGTGTATCCTATCTCTAGAGACAACAAG
CCACCTACTATATGAATGCCCATGGTCGCGAAAGGTATGGGATGGGCTAGCGGTCGTTGC
TAACTTGACGTCGCTAAATCCTCAATCATGGAGGGCAGAGACAACACTTAGAGAGTGGTT
TACATCTCTAACTGATCATGTAATGGAAGAGCGAAGGAAGAAGGGGGCAAAGGCACTTGC
AATTTTGATATGCTGGGAGTTGTGGCTAGAGCGTAACCGTAGGATTTTCCAGCAGAAAGA
ACTACCGGTCTCAATATTGATATCGCGTATCAGAGACGAAGCCGCTACTTGGAAATTGAC
GGGCTGCCCGATTGTCTTTGACCCGGGCTGAGGCACTAGTTCTTCAGATTCTGCTTGGCC
GACAAAGCCGTCAGGAGATGTTTCTTTAATTTTCTCGGTTTTGGTTTTTGGTTTGTATAT
CTGTACTTGGCCGTCGGCCGGTTCTCCTTCTTAATAGAATCACAGCAGATCTCCTACTGT
CTTACTAAAAAAAAACTGTGAATGCGTTGCAGGTCCTGGCAGTTCTCATGTTCTCGGGAT
CCTGCGCCGCGGGATGGATGTGAACTTCTGAGAGGAGTACTGGCGGCTGCCCTGCACCCA
GTTCCAGCTCTCCGTCGCCCTGGCGTTCATCACGTGGTCGTTGCAAGCCGCATTTTCTTT
CTCCGGGTTCTGGCTTCTGATTTCCTTTTTCTAGATCTTTGTTGAGAAATTATAAAAAGA
AGCCCCGCACTAAGGCTCTTTTATGCAGCTGCTCCACAGCCCCATATGCATGCAAAAATC
TTTCATCTCATGTTTACATCATCGCATTAAATGTTTTTTTAAAAATTTTAAAATGATTTA
TCCCACAAATTAATAATTTAATTTCAGATTCGCTTTCACCGTTAGATTCGTCTCGACGAG
GCCTTCAAAATAAGATTCTATGTTGACATGTTTCGTTTATTTTTTCTCGTTATTTCTAGT
TGCCATATTTATGTCATCATAATTGTCATCTTACGGTGTATAGTGGTCACAAAAATTAAA
CATAGCTATCAGGACAATACTTTTATACATTTTACGCATTGCAATGTTATGTGAAGCTAA
AAAAGGGTGTTAAAACACTAACAAGAAGCAAGTAAATGCATGAATCAGCACAAGTACAAT
GAATCAAGTTTTTTAGTGGGGTATATCGACATTTATAAACCTGATAACCAAGTTGATTTA
ATGTGAAAACTATGTAACAAATAATGTGACAAGTAAGTGGTAATAATCTGAAAAGTACCG
ACGAAAACAAAAGTTATCGAAACATGTCGACGTGGGATCTAGTTTTGAAGATCTCGTCGC
GAAAAAGTCAGTGGTGAAAGCGGATCATTAATTGAGATAACGGTTTGGGAGATAAATCTT
TTTTAAATGTAAAATTAAAAGAATATTTAATAATATCATACTTGTCTAATGTTGCATGCA
TGCAAGAAATGGATGAAAGCTAGCCGCTGCACGAGAGGACTAAAATGGGCCGCCGCCGCA
CGAGAGGACTAAATCCTCTTTTGATTTTACATTTAAAAATTATTTATCTTCCAAACCGTT
ATCTCAATTAACGATACGCTTTCATCACGGACTTTTTCGCGACGAGATCTTCAAAACTAG
ATCTCATGTCGACATGTTTCGATAATTTTTGTTTTCGTCGATACTTTCCAGATTATTACC
ACTTACTTATCACATTATGTGTTACATAGTTCTCACATTAAATCAACTTGGTTATCAGGT
TTATGAATGTCGATATACCTCACTAAAAAACTTGATGCATTGTAATTGCGCTGATTCATG
CATTTACGTGCTTATTGCTAGTGTTTTAACACCCACATTTAGCTTCACATAACATTGCAG
TGTGTAAAATGTATAAAAGTATTGTCCTGATAACTATGTCTAATTTTTATGACAACTACA
TCGTAAGATGACAACTATGATGACATAAATGTGGCAACTAGAAACAACTTAAAAAAATCA
ACGAAACATGTCAACATGAGATCTTATTTTGAAGGTCAACCTAACGGTGAAGCGAATCTG
GAATTAAATTATTAATCTGTGGGATAAATCATTTTTAAAATTCAAAAAAAAAACATTTAA
TGCGATGATGTAAGCATGAGGCGAAAGATTTTTGCATGCACATGGGGCTGTGCGAGCTGC
TGCATGGAAGAGCTTTAGTGTGACGCTTCTTTTTATAATTTCTCAATAATATTTAATAAT
ACCATACTTGTCTAATGTTGCATGCATGCAAGGAATGGATGGAAGCTAGCCGCCCCACGA
GAGAACTAAAATGAGGCGCCGCTCCCTAGTAAAGTCCATCTTTGTTTTAGGCCAAATCCA
CCACGCGACCCCATCTTGTCCGGCCTCATCCGTTTGGGGTAAAAGGAACAAACCGATTGG
CCCAGCGCGAGACGGCCGGACCCATCTTGTTCGTTTTGTGTCCGGAGCTATCCATTTCGA
GGGATTTGGGTCGCGGCGGACAGCAAACGGACGCGCGCTCATCCGCGTCAGGGCCGCGTG
ACAGGCGGCAACCTACCTTCCACCCGTCCACATCAATGCGCACAAGCGACCGGGTCCGCG
TGTCATCCGCCCAGAAAACGGACGCGGTCCTTTTTAAATAGGGAAGCCGTAGACCGGTCG
TCGTCCATACTTTTCACTGCACCCCGCGGCCTCATTAAAACCCGACATCCCAAACCAACT
CGCCGGCACGCCGCCTCGCAGCCAGTTCTTTTTTGTTACTCGAGCAGTTCGTGGAAGGAA
TCTTGGGCTAGGAAACATCTGTCCGAGCGATCACATCAACTGTGAATGCGTTGCAAGTCC
TGGCGGTTCTCATGTTCTCCGTATCCTGCGCCGCGGCCAGCGTGACCATCTTCTTCGTAA
AGGATGTGAACTTCCATCTTCTTCGTAAAGGATGTGAACTTCTGTGCAGAGCACCGGCGG
CTGCCCTGCACCCAGTTCGAGCTCTCCGTCGCCCAGGCGTTCATCACGTGGTCGTTGCAA
GCCGCGTCTTCTTTCTCCGGGTTCTGGTTTTTTTTTTCCTTCTTTAGTGATCTCACTGAA
TCGCCGTCGCGTCGTGCTGATCGCCAGTCAGGAGGGTAAATCAGTTGCAATGTGCTCGGG
ACGCACTTGTTAGGTTTTTCTTACAGTTATGGCCACGCATCCTTCATCACTTGTTACTCC
ATAGATTGTCTGTTTGATAGCTCATCTTTGTTTTTAGTGGCTGCGAGTTATGGTTATCAG
GGCCTTAGGTGGGACAGTTACTGTCTAGATGATGTGGACTCTGGTAGAACTCTTCTGTTA
ACGAAACAAAATGTCCTATATTTTCAAGTGGAATGGATGGATGTGGAACAGTTATTGTTG
CTACGAGGGAGTAGTACAGTACAGATAGCCTCCTCGGTGCACGCAATAACTGAATAGCAG
GAAGAAGCTAAGCAGGCAGTCCATTATTACCGGCAAGAAGCCAACTTGTCCGTCCATCAT
CAACGCAGTTTTCCCACGAACAACATCGCACCATGCATGCATCGTACTCCCTCCGTTCCT
AAATATAAGTCTTTTTTTAGAGGTTTCATTATAGGACTACATACTGATGTATTTAGACAT
ACTTTAAAGTATAGATTCANNNATTTTGTTTTGTATGTAGTCTCTTAGTGAAATNNNNNN
NNNNNNNNNNNNNTAGGAACGGAGGGAGTACATCACTGACAATAATTTTCGACTGTTCAA
TGTTACTAGTACTACTGATAAAGTATGTGATAACAGCAGAGAACCAGAGACCAACGTAGA
CCGCGAGCAGCGCTTAGAGTTACGTCGGCGGTCACTCGGTTGTGGCTGCAGCGGCGGCCT
TGTCGAGGGTGTTGGCGATGTCGATGACGAATCGATACCTGACGTCAGCCTTGGCAAGGC
GCTCCATCGCTGTGTTCACGTACTCCGCGCTTATCACCTCGATGTCTGCCGTCACGCCGT
GCTTCGCCGCGAGGTCCAGCATCTCCTGGGTGTCCCTCATGCCGCCGATGCAGCTCCCGG
CCAGGGTCTTGTTCCCTGTGCATTCAGAAAATATATGCATCAGTTATGCACAAAATGCCT
GTTTATTGCGAGATCGGAGAGGAATATGTCTAGGCTTGTGAGATCCGAGAACTTACTGGC
AACCAGAGCAAAGGGAGGGACCTCGATAGGCTGCTCTGGGAGGCCGACCATGATCATCTT
GCCGTTGGGCTTGAGTAGCCCGAGGAGAGGGGCCATGGGGATGTTTGCAGACACCGTGTT
TATGATGCCATCCATGGTGCTCACCGCAGCCTGCAAACACAACACAAAATTAAGCAGTAA
TATAAGCAGACATGGACTCCTGTTTTCTTCTCCACGGGAGAAACAACCGTCTATAGCTAT
AGTCCGTTTGATTTGAGGATCGGACACATGGGCATACCTTCATCTCGTCGGCGTCCTTGC
TGACGACGAACGCGTCAGCGCCAAGCCTCTCGAGGGCCTCCTGCTTCTTCCCTGGCGACG
AGCTGATCACCGTCACCTTCATCCCAAAGGCTTTGCCGAACTTGACGGCGACGTGGCCCA
GTCCGCCCAGTCCCAGCACGCCAAGGTGCAACCCGGGAACGTTCAGCCCGTGGTACTTCA
TGGGGCTGTACACGGTGATGCCGGCGCACAGCAGGGGCGCGCCCTTGTCCAGCGGCATGG
CGTCCGGGAACCGGACCACGAAACGCTCGTGCACCACCACCATGCTGGAGTAGCCGCCGT
GGGTGACAGTGCCGTCACGGTCGACCGAGTTGTAGGTGAAGATTATGCCCGGGCAGTGGT
TCTCGAAGCCCTTGTCGCAGCTCTCGCAGGACTGGCACGAGTTCACCATGCACCCGACAC
CGACACGGTCGCCGGCCTTGAACTTGGTCACGTTCTTGCCGACCTCGGTGACCTCGCCGG
CGATCTCGTGCCCAGGGATCATGGGGTACTTAGCGTTCTTCCAGTCGTTCTTGATGCTGT
GCAGGTCAGAGTGGCAGATCCCGCAGTACAGAATCTTTATCATGACATCGTCGTCTCCGG
TGCTTCTGAAGAAGGAATTATACGAAGAAACATGAAGCGTCATGAAAAGAAACGCTGTTA
CATGTGAGTGTGTAAATCAGGTAGTAATCTCGTACTAGTACATCATGGGTTTGTCTATCA
AACCAATTAGTAGTCACTCGAGCAATTGGTCTAGACTGTCACTGTCAGTCATGCACGCAA
ACGATATTATTATTTTTCTGAGCCAACTGCTGAATTTTACCATTGAGTCAAATGATTTTA
CTCGTTAGAGCAAATCACATGATTCAGTCAGTAACTCTTCAGGAAAATAAAGGTCCCAGA
AAATAATTCACAAAGCAAATTCTAGGACTGCAGATCCTAAAACCATCCATCAATTACCTT
GTACAGCTCGTACCATACTGGTGCGGCTATGATAACGACATAAAACTGCTAGCGCCATCA
ACGAATAACACGAGCCTTTCGTTCCCAACTGCAAACCACTACTCAATAATGGGCATGGTT
TGCCCACACATGTTGGCACCATTAGTTTATACGGAGATATGTAAGTAGTACAAAGATTTT
TCAAATCCAAATTATTTCTTATGACAAACTTGTGGCGGTACCCTTTGCATCGAATCAACC
TAAATAGTCCAACCTTGATAAACTTGCAGGTATTCTCTATTCGTGATAGATGCACTGGTT
AAATTTCATAGATCATTATCTAGCATGTCCAACCTTCAATCCAAATAAGCTACTGTAATA
ACAAAAACAATCAAAATCACCACAACCTCCTTGCCGGCCAGTCGAAGCATGATTAAATGC
AGTCACTGAAACAGGTGTCAGGTGTGCCGTTGAGGCTTGCCCACATGAGCGACTCGATTC
ATACCGCACATACAGAAGGAAAGTGACACACACACACACACACACACACACACACACTCA
TGTACTCGGTAACAGTGACAAGTAACCGAGATTGACACATGTATGTGCCTTTTACAACCA
ACAGTGGCGTCGCATCATCAAGATTCCAGAAGGAAAACCACTGCCGGCAATCCCATGGTT
GTACTGGACACACGACAATTCCATGTACTGGACACATAATAATTCATAGACTTTATTTCC
ATGGATATGCTTTGCTCGGAGTGTGCCACTGATAATTCAGGCCCCCCTTTGCAAAGGATA
AAATTCACAAAAATAATAATCACAGAAAGCAACCCGATAGCCACCATTATAAACCTACGG
AAACAAACTGACATGCCATAGAGACTATTTCGAGAATTTGCATCGGAAACGAACTGACAT
GCACAATTTCGCTAAAATCACAGGGGGGGGGGGGGGGGGGGGGGGGGGGGACGGGGCCGG
CGCCCCAGGAGGGGGAGCGCGTTCTGCTGCTCAGTCA