Contig Data
morexGenes
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Map Locations of contig_90536 (3566 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_90536

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_80440 2 1822 bp MLOC_80440.1 Available Available LOC_Os07g01020.1, FRAME:-3, EVALUE:0.0, 13107.m00002 protein SOR/SNZ family protein, putative, expressed





CDS Structure of MLOC_80440






Contig Sequence (3566 bp)

>contig_90536 3566 assembly3_WGSMorex_rbca.fasta
ATGAAAAAATAACCACGAAAAAAATAATCACGAAAATGAAAAAAATAACCACGAAAACTT
TTGTTCGAGTGCGGGGTGAGCGCGGTGAGAATTGCTTGGTTATTTCTTTTTTTCTCCTTG
CTTTCATGGACGAATAACGAGTCGGTTCCTTCAAATCGGCGGAATCACTTGGTGAAGCAT
CTGAAAGGAATATTCCCTGCATTCGGATGATCCAATTCCGATTCCTAACCCAACTAAACA
CGAGAACGACTGCTAAGGATGGAACCAACCCGTCCGATTTCAGGATGAGACCAGACACAT
CCTTATGGATGGAAAGCATGGACCATTTACCCGCAAAAAGGAAATGAAAGCATGGACCAC
GAGTGATCCTGCTTTCTGAAGGGACCGCCTTGTCGGTAGGCGCATCCAGCGGCAACCCAT
CAGCACGAGAAACAACTAGAGTTTACTACCGAGCAGAGGTTCGTTTGCTAGAAGGAGCGT
GTAGGAATCTGGTTAACCTATAATCCACTACATAGGCGTAAGATGAGGAAACGAGGATTT
TGTTGCCTGGTCAGGTTAGGGAAACCAAGGCCAAGACCAGTCATTTTCGCCATCTCCAAC
AACATTCAATCTCCACACTCCAGTTTGGGGGCAAACACGGGCAACAACAAACGAGAGCAT
TGCACTTCAGAGCAAAATCCCTCAGCTGATCTGAACTTGCAACCAACACCCAAGATAGTA
CTGCTGGATAGATAATACATGATGCACCTCGAGGAACAAAATGACACATGATGCAAGCAA
GATTCGAGTTATTACGACGACGATCCATGGGATGGCAAGGAGTTTAGGAAGGTATGGAGC
TACTGGGATCGGGCGGCGAAGCGCTCCACGTTGGGGTCGGACAGGTTGATCCCCACCATG
GCCTCCCCTAGCCCGGCGCTGACATTCGCCAGGATCTCCGGGTCGCTGTAGTGTGTCACG
GCCTGGACGATGGCGCGGGCGCGACGCGACGGGTCGCCGCTCTTGAAGATGCCGGAGCCG
ACGAAGACCCCGTCGCAGCCGAGCTGCATCATCAAGGCGGCGTCTGCAGGGGTGGCGACG
CCTCCGGCGGCGAACTGTACGACCGGGAGGCGGCCGAGCTGCTTGGTCTGCATCACCAGG
TCGTACGGGGCGGCGATCTGCTTGGCGTAGCTGAAGACCTCGTCGTCGTCCATGTTGCGT
AGGGCGCGGACGGCGCCCATTACGGAGCGGACGTGACGGACGGCCTCCACCACGTTGCCG
GTGCCGGCCTCGCCCTTGGTGCGGATCATGGCGGCGCCTTCGCGGATGCGGCGGAGCGCC
TCGCCGAGGTTGCGGCAGCCGCACACGAAGGGGACGCGGAAGTTGTGCTTGTTGATGTGG
TGGGCGTCGTCGGCGAGGGTGAGGACCTCGCTCTCGTCCACGTAGTCCACGCCGATGGCC
TCCAGGATCTGGGCCTCCACGAAGTGTCCGATGCGGGCCTTGGCCATGACTGGGATGGTG
ACGGCGCGCTTGATGTCGCGGATGAGGGCCGGGTCGGACATGCGGGCGACGCCGCCCTGG
GCGCGGATGTCAGCGGGCACGCGCTCCAGCGCCATGACGGCGCAGGCACCGGCCTCCTCG
GCGAGGCGCGCCTGCTCGGCGGTGACGACGTCCATGATGACGCCGCCGCGCAGCATCTGG
GCGAGACCCACCTTGACGGAGAAGGTGGCGGCGGCAGGCTTGGCGGTGGGCTCCACCACC
GCCTTGTTGTTGCCGTACAGGGCCACAACACCGTCGGATGCCATGGATTCTTCTCCCTCC
GATTAGCCGCCGCAACAATCTTTTCTTCCTCTTTGGGGGTTTGGGGATGGATGAGCTAGA
TGTGGTTCTGCTCTAGTGGAGTGGTCGAGGAGAAGTGGAGCTGGACTTGACTTGCAACTG
TAGTACTGGACACGCGTAGACAGAGAGAAAGCTGGGCTAATGGGCCATTCCTTCCGGTCC
AACGATCCAATTTTATCCCAATCATCTCCGTTGCCAAAAAGATAAATTCAACATCTCAAT
CTGAGTACTCACGTTGTCAAAACAACTAGGCCCAGTTTATTTCTAATTTTTTTAGAGTTC
TAAAATAAGTTGTCTCTTACCTAACTTATTCTAGAAATTCAACCAATTATTTTCTTTTAA
AAGCCTCCTAGTCATGTCTTAACTATCAGGATTCTAAAAAATTTTGAAGTCAACAAAAGA
GTGACCCCCAGTACTAGCATGTTTCTCTATTATCCGGCAAAATGAAAGCGAGAAGTATTT
TTCTCTTCGAGGAACCACATTTATGATTTGTTTACAAAATCATAAACTACATTGCCTATT
TATTGTTTTCATTTATATGACCCTGTCATCCGCGTGTAGAACGAGTATCAATTCTTCATT
TGTGTCCTCGCCGAAGAGACCCTTTCTGTCCGTGTATGACCGTGGAGTATCTTTTCATTC
ATCTATGGACCAAAGATAATCTCTTTGTTACAGCTCTAGCCAAAGATAATCTCTTCAGTC
CTAGCCACGCCTTAGTGGCTCCTAGGGCCGACCTCATCACGTAAACATGCGAATGAGTTT
GCATGTCGTTCCTCACATGGACGAAGAGTTACTCCTCATTTCCAACACAGATGAGAAGTC
ATTTCTGTTTGCTAGTTATTGATTGACGTTTCCTCTTTTTTCATTTCTCTTCCGGTGATC
CCTCGACCACCGTTTCCTCTCCCAGACTTTTTCTTCATGTCATACCCTCTCCTGTACTTT
TCCTTCCCACCATCCCTTCTCCCACATTTTTCCCTTTCTTTTGCCTCGCTCATCCTATAG
AACTCATGTCTCACATCTTGTGTTCTACCTTACCTATTTCTCGAGTCATGTCTAGTCACC
CCGCGTCCTTTCACTCCAATGATATCTCATTTGCTTTTGTAAGGTGCCACAAAAGTTAAG
ATGAGGGTTCCATGTGTCCCTTTTGATGAATTAATTATTTGTGAAAGGCACCTTATGGAG
TTTAGTAAGTGTTTTTCCAAACTCGAACTCCCGAAGAAGCTCTCAGAAAGGAACCTAGAA
GAAAATCGACAAGAACTTCTGAGGTTGCATAAAAGGTTGTGAAGGAGGTGGTGCATGTAA
GGAAGTTGTGTGCGTGGATCATGACGATGCGGGGAGGGACGTGGGGGTAAAGCACATGGA
TGTAACTCTCGGCGATGTGAGGTAGGACTTCGCAGACCTTGCGCTCATGATGAGTCACAA
CATCGAAGAGCGATTACATCTAACAAACACGTAAATACCTCGTAGCTGGTCATCAAGATG
CCTCTATCGGAAGACACTATCGGAATCGGGGCTCCATAGACCCAGAAAGGTTCAAACACT
CAGGTGTGCTCGCTCTCCTGCCCTGTTCTGCCTCACAACCTCACGCCGACTCTCCCGTGG
GTCAAGATAAGGAAGATAAACAAGAACACACACGCAACTTACCTAGGTTTAGGCCACCTT
GCGGTGTAAAACCCTACTCTTGCTTGTCTAGATTGCTTGAGGTGGAAGGCGAGTACAAAG
GAAAGGGGGTTCTTGCCCTAGTGGAG