morexGenes - Barley RNA-seq Database

Contig contig_90333
Source Contig contig_90333
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_90333 (8015 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location
Predicted Genes from contig_90333

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_80407	1	158 bp	MLOC_80407.1	Available	Available	LOC_Os03g17100.1, FRAME:-1, EVALUE:1e-20, 13103.m02043 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
MLOC_80406	1	180 bp	AK251852.1	Not available	Available	None
CDS Structure of MLOC_80407

CDS Structure of MLOC_80406

Contig Sequence (8015 bp)

>contig_90333 8015 assembly3_WGSMorex_rbca.fasta
AGATGGGGCTGCCGCACCCCTTGGTGGCCTCCTTCTCGGCGGCGGCGGGGGACTTCTTGG
GGAGCAACACGGAGTTGATGTTGGGGATGACGCCGCCGTGGGCGATGGTGACGCCGGCGA
GCAACCTGCCGAGCTCCTGGTCATTGCGGACGGCGAGCAGCAGGTGGCGCGGGATGATGT
GTGTCTTCTTGTTGTCCCTGGCCGTGTTGCCGACGAGCTCCAGGAGCTGCGATTCATCAA
ACCAAGAACGGAATCAGGCATCTTGTCCAGCACAAGAAGAACATAGCAGAGCAGACGCTG
GAGGACAGTGAGAAGATCTGCGGTTACCTCAGCGGCGAGATACTCGAGGACGGCGATGAG
GTAAACGGGGGCGCCGGAGCCGACGCGCCGCGCGTAGCGGCCCTTCTTAAGGTAGCGCCC
GATGCGCCCGACGGGGAATTGGAGCCCGGCCTTCACGGACCCGGCCACCGCCTTCTTCCT
CTCGCCGCCCTTCCTTTCGGTCATCTTCTTGCTTGCTGCTTCTCCGACGAACGACAAACC
ACTCGAGGTGTGGGACGGGGAGCGGGTGCTGGATCGGAACTACTGCGCGTTGCGCTGCTC
CGAGTTTGTGGGTTGGGACGACGCAGGGGCCGCGGGTTTTATTGTGTGTGTGTGGAGGGG
GGGGGAGGAGTTTCGCAAGAGGGGGGATCACAAGGATTTGCTATTACACACCTCAACGAT
CTTGTCGATAGGTGAGAGGGGGCTTGGAATTGAATTTTCTTCAAAAATCAAACCGGCCTC
TGCATTGAAATTTGCTAGAATTCTAATTTTGTTGTTTGGTTGTGGATAGTATTCCCTCCG
ATTCTTTTTTCACTGCGTCTAATTTTTTCTCATTTTTTCCCATATAGTCTGCGCGTTCCT
TTTCTCCAGCTATCTTTACCAAACCTGTCCCTAATAATTAGCTTTGCATGCAGCGTTAGG
TGTTAACTCATCTTCCTAGTTTACTCGGGTTAATTCATCCAAAGAAAAGGGAATGCAGCT
GTCCTTGTATCCGGGATTGAAGTTATACGTAGAGAAAAAACGAATCGGAGGGAGTAGATG
GAATTAAGGACATGCCCAAGGCTCACATGCAGATTTACTCACCGTGGCATCTCTCTGCCA
ATAGGGGACCAGTTAGCGAACACTAATGTCGAAGACGGCCATCCAACGTTACTCACATAT
ATTTCATTTATTGTTTTAACTAACTGAACGAATTCATGCAAACACGACGATTTTACTACA
TTTGAGCATTTTTCATAAAAACACACAAAAGTCATTACATTTTTCATATAAATCAAGAGT
AAACCTTATTCTAAACCTATACCAAATGATCGTCATTGTCCGTTTACCATGTCTGGTCAT
GAGCCCCGAGAACTGAAGCTTTGCCTTCTTCAGTTCCGCCTCGGCGCTCTCTAGCTTCAT
CCCTAGAGCCCCGGGATGAAGTTGTATGCCTCCATGTCACCGCCAAGCGTCTAATCGACC
GACGATGTTCAACCCACCTACCATGCACTACTATTCTTTGCTACGGGCGCGGACGTGTCT
GCTTCGTTGTTGGCGGTAACGCCAGCGGCCGCGACGGATATCACGGACGAAGCGATAGGA
CTCGAGTAACGCCTCGTGCTCAGTCACATCCACGTCTCGCATGATGGATGTGATAACGGC
GAGCAACTCCGCGCGTTGGTGCTCCTCAAGGAGGCAGAAATTGTAGGCTTAGACGACATG
CGCCTGCCGAAACTTAGCATCCTCCACCTCCCGCATCATGTTGGTGTAGTGCGCACGGGC
CTCGTCGATGGTGATGGCCGCACACACTAGTGAGGAGGGTGGCGCCGCTTCATCTTGCAT
TGGGGCACCGTCGGACTTCATGTGATGGTCGTACTGCCAGCCCAAACGCAGTCGTGCGGC
GCCGCTACGTAGTGAGCTCCTTTATTATATAGTTTGTTTTTACTTATTTTTTCATTTTAA
TTTATGATATATATTTTTTTGAACGAAAGGGGTTCCCCTGCCCTATTTTATTTAAAATTA
AGCAACAGAGTCTTACAGAACCACCAACTAGCTAGAATGATCTGAGCAAAGACCAACAAA
ATACCAGACAAAACCAGGAGTGCAGTTCAGCTAACGCATCGAAGAGCCTTACAGAAATCT
TTTATTACAGACACAGAAGAAAAAAAAACTACTTAGCTCCCTGCTCCCTCCCAGGATCAT
CTCCACGTGATCTGAAGCAATTCCCCACGCCTCTTGTTCAGCGGCCTGATGTAATCCCGA
AGAAGGATTGCCTGAGCATCAATGAACAATACCTTACATTGATTTAGATAGATGTCCAGC
TTTGCAAGAATGCATTTTGCACTTCTCCAGGATCGGCCTTGAAAGCAAAATTCATTTCTC
AGCTTCCAGATGCTCCATAAGGAGGCAACAACCATCATATTTATCACAACATTAGCTTTA
GGATCCACAACAATGTAACATCATCAAAATTTAAAATTTCTGGTTTACTGAACACCTAAG
ATAGGAAACCCCACAGTTGCTTAGCGACTACACAATCAAAAAACAAATGTTGCACTGATT
CTTTACAGCTGTAGAATAGACAAGTAGCATATTTCACCGGCCTACGCTTTTCCAGGTTAT
CCCTAGTTAACACCTTGTTATACACACACAACCAAAGAAAAATGTGAAATTTTTGTGGAC
AAATCACTTTCCACAAATTATCACCAAAGGTAGAAACTACACCCCCAAAATTAATTTGAC
TATAAAAAGAGTTGACTGGGTACGAGCCATTCGACTCTAACTTCCAGATAGGGAGATCGG
TATCATCTGAGAGAGTTTCTTGTCTCGCCACCTCAACAAGATTGTCCCAGAGAGCTAAAC
CTGCCTGATCCACACATCTCCGGAATGTCAATCTTAGTATATTCCCATCCCAGACCTTGG
CCACCGTATAGTATGTTTGATTGCAAATTTTGAAAAATTTCTAGAATTGGACTTTCAAGG
TCCCCAACTCAAACATCATGCCAGAAACTAATTGATTCCCCATTACCCAGTTCCCATTTA
TAAAAGACTTTCGCTCCAGCTAGAGCCCACGTAACGCTCTTTCAAAAGGTTGAGCCACTG
CCACTCCTACTCCATAAGATGTTCGGGGAGTTTACAATGTACTTGTAACTAATAAATTTT
TTCTAGTCCCGGACTGAATCATCCAAAAAAAAATTTCCCCAAGAATCCAAGAGGGCCATA
TTAAATTATTTCAGATTGGGGATCCCTAAACTTCCATACTCTTTCTTCCTCGTAATCTGC
CCCCACCTAGCTAGATGATACTTATGTTGGTCATTTAAATCTCCCCAAAAGAAATGTGCC
ATCTGGGCATTGATAGCATTAATCGCCCATTTGGGGAATCTAATCGCAGACATAAGATAA
GCAGGAATGTTGATAATACACGCATAGAGCAGAACAATTTTCCCTCTGTATGCTAAAAAC
CTACCCATCCAGCCAGACAGATTCTTAATGATTCTATCTATAATTGGTTGGATGTCTTCA
CGTCTGAGGTTATCATAATGCAGAGGAACGCCAAGGTACTTTATAGGGGAATTACCAAGC
TTACAACAGAAAATCTATGCAAACTCCTTAGTTAGATCTTCTTCCACATTAATGGTCATA
AGGTCACTCTTGTGGAAGTTGATCTTCAGCCCCGATAAATTTCTAAACAGGTCAGGAACC
ATTTGAAATGTCTAGCCTTATCAACATAATTCTCTGAAAAGAGAATGGTATCATCCACAT
ATTGTAAGCTAATCACACCCCCAGGAATGATGTGAGGTAAAAGCCCCGCAATCAACCCCT
GGTTAGCAGCTTTTTGAAGCATTTTGGTAAATACATCAGCAACCAAGTTAAAGAGCATTG
GAGAAGATGGGGCACCCTATTTAAGCCTTTTACCCCCAACAAAATGAGGTCCAACTAAGT
CATTAATCTTCACACTAAAAGTGATGTTAATTGATATACTTTTAATCCAAGAGATCCATC
TGTTCCCGAACCCTCTAAGAAATTCCCAGCTCAACCTATCATATGCCTTCTCATAATCAA
GTTTAAGAACTAGGCCATGTGTCCTTGTCTTTTTCACTTCATGAATGACCTCATGAGCCA
TAACCACACTCTCCAAAATATATCTCCCTTTAATAAATGTTGTTTGGTTGGTGGAGATCA
ATCTATGGCCAATATGGGCCATTCTATTGGTCATAGCTTTGGAGAAAAATTTACTGCACA
ATTACTCAGGCCGATGGGTCTAAAAAATTTCATGTCCTTGGCATTTCGCTCTTTAGGAAT
AAGAACAATCAGAGCGAAGTTCAATCTGTGAATATCAAGATCTCCACATTCAAAATCTCT
AACTAAGGCCATAAAATCTCCTTTAATCACATCCCAAAAGGATTGATAAAACAGGAAAGA
TAACCCATCAGGGCCAGGAGCGCCATTGGCATAGCTGCCAAAAATGGCAGTTTTGATCTC
CTCCTCCGAGAAATCTCTCTGGAGGGTATCATTCTCTTCTTCAGTCACCAGTTCCTCCTC
CTCCCAGAAGGAAGCCCCCAAGTTAATGTTATCTTTTGGTTCAAAGCTAAAGAGCTTCTT
ATAAAAGGAAGTTGTAACTTCCAGCATTCCCTCAGTAGACTGAACTAGACCATAGTCACC
ATTCAGCATAGAGAGGTGATTTTTCCGGTGTTTATGGTTAGCCATAGCATGAAAATATGC
ATTATTTTTATCCCCACCAATAATATTACGATCTCAAGATCTTTGCCACAAGGCAGTTTT
TTTCCTGTTTCCAAATAAAATCAAGTTCAGATTTAATCTCATTCAGCCTACATCTATCCT
CCGCATTTAACTGATTTTTTCCGAGAAAACATCCAATACATCATATTCCAGCATAAGCTC
TCTCTTCTTTTTCTTAAAACCAGTTTCCATATTAATACTCCAGCCTTTAATTTTTTCCCG
AAGGATTCTAGTTTTGTTCATCCATCTATCCATGGCATTCTCTCCTTGGATAGAGGTATT
CCAAATACTAACTACTAATTCTCTAAAGCGAGGTTGGTCAAGCCACCACTTCTCAAACTT
AAACATCTTAGGGGAGGTAACCCTCCTAGCCCTAGTATCAAAGAATCAACGGGGTATGAT
CACTCCCCACCCTGGGCAAGGCTGTCAACACTGACAGAGGGAAGTGACCATCCCAAGAGG
TAGAAACCAGTACACGATCAATGGTCGCAAAGATAGGATTCTCCCGGTTATTACCCCAAG
TGTAACACCTATTAGCAATGTTAATCTCCATCAAAGCCCATTTATTTACCCAATCATTAA
ACAAATATACCAACTGATGATTGACTACCCCATTATTTTTATCTGCAATGTAACGAACTA
GATTAAAGTCTCCCCCAAGGATGACTGGATAGGTGAGCCCAACCATCACATCATGAAGCT
CAGCTATAAACTCCAATTTAAGCTCATTATAGGCCATGCCATAAATCGCCACTAGATGCC
AAACAAAACCATCTTTTTTATTCTTAAGAGTAGCAATACAGCAAAACTTCCTCTCCACAA
AACCTATGATATCAAACAACTCATTATTAAGACCCACAAGGATCCGCCGTGCTGTATTAA
TAGCAGGAAGCGAGTGCCAGGTAAAGTCCCTGCCACCCTCAATCTTCTTCAAAATAGTAT
TCTTAATAATCTATTTTTTAGTTTCAAAGAAACCAACAAAGTCCACTTTATTAGATTTCA
GAAATTCACATAGGCACTATACTTTACCAGGTTTGCCTAGACCTCGGATATTCCAAAAGG
CCCCAATCATTTTATCTTAAAAGGATGTGATAAGCCACAAGATTTATATTTTGTTCTAAG
TTTAGGACTCTCCATCTCCAGATCGACAGTGCCATCTTATGTAAAAGATGGATTTTGCCT
ATCATCACTTTCAACTAATCCACAACCCAGGTCCAGATTATCAGGGAGAACAATCTCTGT
GTTATTATTCGCAAACTGAATACCCTTATTTTCTCCTCATAAATCATATCAGAAATAATA
TCTAACAACTCCACTTCATTCTCCCCTATGCATATATCAACCTTATCTGTATAAGAAACT
AAAGTTTCAGGAGAAAAGGTAGCAAATGATTTACGTTTGAACGTAGCTGGAATTTCCAAA
TTCTTCTTCTGCATGAATGCAACAAATTTATCCATGATCTTGACCCCCCCCCATGTTCCC
TGGTTCGTGGTTTGTTGCTGAGGACAGGGCCCCACCTCCCATCTTTACTAGCGTTGATCT
TCTTTTGCCCTGCTTCTTTTTCCAAGGTGTCCAGCAAGGATCTCTTAGTAGACCCCAATG
CAGTAGATATCTCTTTAGCCAGACACTACATCTCAGGCATCATATCCTCTTCCTCCTCAT
CAGATTCCAACATATCAAATTTACGGAGTTGTTCAGAGCAATAGTCCAGATGGACAGACA
TAGGCACAACACTAGTACAAATGGGAGAGCCCGCATCCACATCCAGCTCCTTCCCCATAT
ATGTCTCCAGGTCAAACACCTTTTCTTCAGGCAGTTTTTCCTAGTTTCCTCAACAAAGTC
ATCATGGATCTCATATAACAGAATATGGGGGTGGAAATCAGCTGCAGAAACAACACCCAC
TTGAACACACTTGTTATCACTCCCAGTTTCTAGATTCTTGGACTGAAAATTGGGCTTATC
AATCTCATCAATTACTTCATCATCACCCATGTCATCTCCCTCCTCTTCTCCCCCTTGTTC
TTCATCATTTACCCCATGGTTATCTTCATCAGGATCAACACCATCTCCATTAGCTCTCCA
CCAATCTGATCAAAGCCTTCCATAGTGAATAACAGGATATAGAGTTTCCTTTTCATCTGC
ACCAAACTTTCAAAAGGAATTTTTTTGGGGGTCCCTGCACGCAACTTTAATCCTTACTAC
TTCAGAAAAGCTCTTAAAAATCCCATTCCAATCTACATCCACAAGGATGCCAAACACATG
CAGCAACTTGAGCAAATACCATCCAAGCACACCACTTTGGAGGGATTCCTTCAATCTGAA
CCCAAGCTTCAATTAGTTCTCCAAATGGGTCTAACATGCCTTGCCATTCACATATTTTCA
CGGACACACCATCAATTGGCAACTCAAAAGCAGGAAACTCAATTAGGTCATTAGCATTTT
TCTAAGGTGGAAACCTCAACAAGAACTTCTTCTCCTCCAACTCTCTGATCTGCCATGGCC
AATCCTTGTACTTACAAAATATCTCATTTAACTGAGTTAGCAGCTCTGAAGCAGAAACTT
CACATTTAACTAGCTTAAGGATGACACAGTTTTTATAATTTAGCCAGCTTGGCTCCGCAG
CCACAGGAATATCGATATGGTAAAAACCCAATCCAGCAGCTGCACTACCAAAATAGGTAG
CAGTAGGTTGTGGTTTAGCCCAGGCAACACAATTGTTCACATTATGACTGCCTGCATAGA
TGAAAGATCTTTTTTGCTTCATTACAGTTCCCCGCATGGTACCCTGGCGAGCTACAATTA
AAACAGATCATGTCCTTGTACCTGGGATCAAGGGCGTGCACCGCTAGGATCTGAGAGGTC
GCAGGAGGTTTGTCAGCCGGGGTTGGGACAGGTGTAGGGATCTGCTTCCCTCCAGTCCCA
AATTTGGCCATCGGCGCTACTTTGGCTTGATTTCCAAGAGGGGCAACCTTAGCCTCCTGG
AGGTTCTTCTTGCCAGGAGGGGTCCAATGGTTCCTCATCTGGTTCCCCCGCCCTTTGTTC
TCCATCTCCCCCCGCACAACCTGGGTGAACGATCTAGATCCAAGGGCAGTCCCCTCGGAG
GAAACTTTGAAGGTGGTGGAGGATGGGTCAAAACGACCAACAGATCTCAAGGGGAAGCAG
TCTTGAAGAGTAAATTTTTTTTGCTATGAACATATCTTACCTCACCCAAAAAAGTTTGGG
GAACGAGGAGCTTGTTGGGGAACGTCGCATGAGAA