morexGenes - Barley RNA-seq Database

Contig contig_89506

Source Contig contig_89506

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_89506 (6541 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_89506

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_80252	2	2468 bp	MLOC_80252.1	Available	Available	LOC_Os02g50330.1, FRAME:-2, EVALUE:1e-137, 13102.m05711 protein RNA-dependent RNA polymerase, putative, expressed
MLOC_80251	6	3783 bp	AK367497	Available	Available	None

CDS Structure of MLOC_80252

CDS Structure of MLOC_80251

Contig Sequence (6541 bp)

>contig_89506 6541 assembly3_WGSMorex_rbca.fasta
GCCTACCTCCATTCTAAGAGGGCGATGCGCCTAGCGCACGAGCGCGCTCGTGCTACGCCA
CCGCAGGCACTAGCACTGCACGCGCCGGCGCAGCCCGACCTCACCACCGACGACGAGGAC
GCCTAGGGTTATTTTTTTCAATGTTTAATGTTTGCTTATTATTGTTGGAAATGCTTTATT
TATTTATTTTGACACGTCGACAAAAAATGGATCGGATTTGTATTGGACGCATGCGTCGAT
CCAAACATCAAAATCGGACGTTGGTATCCGTCAGATCGATCCAAACAAATAAAAAACAGA
CAAAATCACATGCCATTTGAATAGGCCGGTTGGAGTTGCTCTAAGTTCCGGCACAATCAG
CTACCGAACCAGCTGCGCCCCTTCAGACTCCAGTTTCTGGACAACTTCCTGGCGCAAGCA
ATGCCATATATATAGTCAACTTGCTGCCCAGCTAGCCGGCCAGCAACAAGTCATGGCCGG
GAGCGTAGCGGAGCAGCGGCCATAGGAGCCGGGAGCGCGAGGACCTGCCGACCGACCTAC
CGACCGATGGCCGTGGCGGCGGCGGAGAAGGCGGTGCGGTGCCTGGGGCTCGGGTTCGAC
ATGACGTGCGACCTCAGGCTCAAGTTCTGCAAGGACTCCGCCGGCTGCGTGGTCGCCAGG
AGCCCCGGCGAGACGGCCCCCGCCGCCGTGCCGGGCATCGGCGTGGTCCGCGACATGCCC
GCCGACGTCAAGTGCGGCAAGGGCGACCGCGTCCGCTTCAAGTCCGACGCGCTCGAGTTC
AACAAGGTCAGCACGCCGCACACTCTAGCATAACATAAGCATTCGTTCTGCATGACCAGA
AAGAGTTTCCGATCACCCGATCGCTTCTTCTGTTTGGGCTTCCTTTAATCCTGCTTCTCA
AGATTTGCACATACGTGCACGTTGCTAGTAAGTTACTACTAGAAGAAATCGGAGCAAAAC
GAGACGCAATGGAGTGAAAGTTAAGCCATTTCTTCTCAACATAATCAGTTGGGGTTCTGG
AACTAAGTTCCCTGAAACTTGAGCTAAGTTAATCAAGTGTTGCTGATGAGATTAAGCGCA
AGAAACTGGAGCAAGATGAAACACAATGAAACTGAAGAAGTAGCACTCGTACTAAATCAG
CGACAATTAATATGGTTCGAAGGGAGTAGTATATAAGATTCAGGCTGTTTATCCTTCTGA
TAATGCTCCGGAAGTACCATGTGACTTCTGCTAGATTTTTTTATTTCTTTTTGCATAGTA
GAAATTGAGAAAGCATCATCAAAAGCAAGCAACTGGTTCCAGAATTAGACGCCAGATTAA
TTAGTTTATAACTCAACCGAGTAGGGAAAGCAACACAAGTAGTAGTACGGTTGGTGTGAA
TGGTGGCTGCTATTTTAATTCCATTTGTTATTTTGCAAATGTGAATGGTGGCTGCTTGCA
GCAGAGCTTTCCCTCATTAAACATCGATTTTTGGGTGCTGACCACGCCTGTGCGGTCCTA
CGTGATTCTCACGAACTGCACCAATCATCCACCTCTTCCTAATCCTAACAAAAACAAACA
ACCGTCGACCGTTCTCAACATTTTCTAGAGTTTTTTTTTTCTTTCTTTGACAAAGGGGGT
GATTTTATTGGCTTGGCATTTTCCGGGAGTATAAGCGATTCCCTGCACTGTCGGCGTCAG
ATGCTCCGCGTTCCATTGGATCAAAACCAACCATCCAAAATCAAGATCAGATAGTAAGTA
GGAGTAGATCTGGTTGGCCATAGCGCGTGGTCCTGTTGTCCTCATTACATTATCCACCAT
GCTAACTTCTTTTGTAAATTCAAGTCAAATTTGGCTCCACAATTATGGTCACCCCTTGTA
TAAAAAAACATCACCTCCAATCGTGACAGTGCACTAGCAGCTGTTTGACTTTCACCACAA
AGATCCGTAAGACGTACATCAACGAACCTGAAAAAAAAAACACTTACAAAAATATAGTAC
AAAACAATTACTTCATAGCTAGACGGTGCACTAGCAGATGTTAGCACTTCTGAAGAAGGA
TAGCAATAGCTAGCGCATGTTCACTGTGAGGGATGACATTTGTGAATGATTTTGCTGACA
ATATCTTCATATTCGCATGACATTTTCTTCACAGTAAGACATTTTTTCCTTCTAAAACTG
CCACCGTTTGATCTCGCGTCGCAACTAAAACAGTCAAGAAAAACGCGTTCGCATTGTTGC
CATGCCCATTAGGGACCGACCGTTCGCCAGTTAGTAGTATCGTCGAACAGAAAGGACACG
TATAAACTTGTACGGAAAGAGCGTGCGTATGCTAGGTGAAAGAGAAATGCGGCTGATTAG
AAAGCTGATTTGGTGGCGGTGCAGATGTCGGAGGTGTTGAACCAGCGGAGCGGGGTGGAG
GGGAAGATCCCGTCGGGGCAGTTCAACGCGTGCTTCGACCTGGACAGCGGGTCGTGGGCG
CAGGACGCGTCGTCCACCAAGTGCCTCGCCATGGACGGCTACTTCATCTCCCTCTGCGAC
CTCCGCCTCGACCGCCGCCCGCTCGCCCTCGCCGCCCACGTCCTCCGCGACGTCCCCGCC
GCCTGGGACCCCGCCGCCATCGCAAGGTCAGCTCCCTTCCCTCCCCTCCTCCCTTTTCCT
CACCACCACCACCAGCAGTACGAAGACGGTGGCAGTGCAGTCCATGACCTTGACCGGCTC
CACGGCCGCACGCAAAGCAGAGCAGTTCAGACGTCCATACCGAAACTTCTGACCGCAAAC
AGAAAGATAACGTGGTTCAGAGCATTATTAATCTAGTGCCGGGAAGATGCTACGACGCCC
GTTTTTCTCCTCCTCTGCCCGTCTTTGTTGAACGTGCTACAAGTAGAGCATGTGGCGCCC
TGGGCTCCGAACGTGTCGCCATTGACAAACCGGGGCGCGACACGACACATGCCGCCGGCC
GGTTTGGTTTGTTCTTATCAGGCAGACGCGTACGAGTACTTCTCATCAGACAGTGAACTG
ACACTGACAGTCTCGTCGACACGAACACGACACCTTGTATGAACCATTGCACCCTTCGGA
TATGAACGTCAGTCACTGACGGAGCGGTTTGCGTGCGGGCATGCAGCTTCATCGACAAGT
ACGGGACACACGTGGTGGTGGGGCTGAGCATGGGCGGGCAGGACGTGGTGTACGTGAGGC
AGCACGCGTCGTCGCCGCTGTCGCCGTCGGAGGTCAGGGGCCATCTCGACCGGCTCGGCG
ACCAGCTCTTCTCCGGCGCCTGCGCCGTGCCGCCTCCCCACGCCAAGTCCAGGTCCAAGC
TCACCAAGACGCCGGAGGCCTTCAACGTGTTCGACGCGCAGGTGGCGCAGCAGCGGCTGC
AGGGGGTCACCACCCTCGTCTCATCCAAGGAGGTACTTACAGTTATCTGGCAAGCTGCGA
CAAGTAGTAATATGGATCGGAGGGAATAACAAATTTACTCAGTTCAGTCGTGCCTTCTTC
CTCGCGTGCGTGCAGGGAGTGACGGTGATATACTCGAAGCGGGGAGGGAACACGACGGTG
AGCAGCCACGCCGAGTGGCTGCCGACGGTGCCGGCGGCGCCCGACGTGATCAACGCCAAG
CTCGTGCCCATCACCTCGCTGCTCAGGGGCGTCGCCGGCACCGGCTTCCTCTCCCACGCC
ATCAACCTCTACCTCAGATGTGAGCGCACCTTACTTACATCTACATGCCATGCCCATGTC
GATGTCACGCTCCTTTGCTTAATGCTGAGCCTAATTGAACCCAGCGTACCGTACAATGAT
GCAGCCGAGTAGAAGATTTTCTTTCGAGAGTTAACACTGCAAGCAAGTGCTCGTCCGTGC
TTAATAGTAGTACGTGTAACAGTACATTCAAAAGTGACACGTGACCTGCCAAATGACTGT
TACAGATAAGCCGCCGTTGGCTGACCTGAGGTACTTCCTGGATTTCCAGCATCACAGAAT
GTGGGCCCCGGTGCTCGGCGAGCTGCCCCTCGGCCCATGCTCCAACCGCCAGGGCTCCGG
CCCGGCCATGCATTTCAGCCTGCTCGGCTCTAAGCTCTACGTCAGCTCCAGTCAGGTAGG
AGTATTTTCAATCAGAGACCCCCCCCTCATCGTCTTCTCTCGGATTGTTCCAAGATTTTC
ACTGAAAGACCAAAGGATTTTCGATAATTGATGCATGATCATATGACATGACGAAAAATA
TATGTAATATATTAACGCAGGTGGTCGTGTCCAATTTGCCGGTCACAGGGATGAGGCTGC
ACCTCGAGGGCAAGAAGAACAACCGGTATATAATCAAGCCTGCCCTGCATGCTCGTGGCA
ATCACCCATGAATTTTGATGCAACGCGTGGCTAACCCAGTGACAACTTCGTGTATGCATC
AGGCTAGGCATCCACCTGCAGCACCTGTCGGCCACCCCGACGTTCATCGCCGCCGTGCAG
GCGCAGGCCGACATGGCGCCGGCGTGGCGGGGCTCCGAGTCGGTCACCGACGACCACCGC
TACTACGAGCCGGTGCAGTGGCGGACGTACGCGCACGTCTGCACCGCGCCGGTCAAGTAC
GACCCGCGGTGGCACCGCTCCGGCGACGACGGGAGCCGCGCCGCCTACGTCGTGACCGGC
GCGCAGCTGCACGTCATGGCGCACGACTCAACCACCGTGCTGCACCTCCGGCTGCTCTAC
TCGGAGCTCCCCGGCTACGCCGTCGTGCAGTCCAGGTGGGGGCGCGGTACGGCGAGGAGG
GCGTCGGGGAAGTGGTCGTCGTCGAGCTTCCTGTCCATGCCCTTCTCGGGGTCCTCCTCG
TCGTCGTCGTCCGGCGGCGGGCAGAAGCGGGGGCCGCCGCTGGTGGTGGCCAACATCAAC
TCCGGCGTGTTCGCGGGCGGCCCGCCCGTGCCCGTGGGCGCGCAGAAGCTGCTCAAGTTC
GTGGACACCTCGCAGGTGACCATGGGCCCGCACGACAGCCCCGGGTACTGGCTCGCCACC
GGCGCCAGGCTCGACGTCGACAAGGGCAAGATCTCGCTGCACGTCAAGTTCTCCCTGCTC
GCCCCGTCTCCTTCCTGACAGTTCCAGAGTCTGTACAGTTCTCCTGATGCCAAATGCTAA
CTGACCCCTGTGATTAAGACCTGCTCCTTTTGGATTTTGGATTTGTTTGGAACCTGTAAA
TGCCGCTGTGCAACGAGTGTAAATTCATACTGTAAAACCAGAGGAACTATTTTGATAGTA
CTAGTAAGGAAAAAAGATTCATTGATACTCGTCGTACAAGCAAGCTGATAGTTGGGTCTT
CCATACATTTCTGAACATGCAGTACGCATATTACCAAAAAGGCAGGGGAAAACTAGGTAC
GCCACAGATCATAGCACAGAAATACATTCGACGACTGCATCCAAAGACCCCCAAGGTTCG
TGCTTCGTCGCCACATGTACGTCAACACATCTGAGTTAACAATCACAATCGCACTTGGGC
GATCATTCTAGCACAAGAATCGACATGTTCAAATATATGTACAAGACCAACAACGACCTG
ATGGTCGCACTCAGCCCAATATTGTGTTCCGTCTCATTCTGTTCTGGAGATCGAGCATCT
TCCTGGCAATGTTCTTCTTCTGCTTGATGAGAATCAGCTTGTCATAGACACACCATGGAA
AACTGATGAGGTGTGGCCGGTGATCATATCCTTCATTGTAACAACCCCAGTACTGTGGGT
GATAGGTAACATGATACCAAGCGGATGCCTTGGCGACCAAGGCCTTGTGGCCATCTCCGC
TCTCATCTGAACCCATCTCACTGAACCATGACCTTGCTTCCTTCCGCAAAGATTTCACCG
CCAGTCTGATAGCATCGGCGTCACTCTTCTTGGTAAAATTCTTTGCCATCTTAAGGATGC
ATCCACTTATTATCTCAGCCTCGCTATTTATTCCGTAGTGCTCCATCAGATTACCCAACT
TGAAGTCATACTCTTCCTTGAACCACACAGCTTCGGTAATGTAGTCTTGGTAGCCATCAA
CTATTAAATCAGTGTCATAAGACAGCGTTGCCACATCCTTTGTGAAGTGTCTAATGTGAG
GGTTCTGCTTCTTAATTTCCCGGTAGAGCTTCCCTATTACTCCCTCGGATACATAGGTAG
CCCTGTCGAGCTTCTCCATAAAATCTGGATACTCCTTCACATGTAGTTCATGCGGAATTT
GAGCCGGCACTCCTGTCTTTGGGTAATCAACAGCAATGGAGAAGAGCTCTGCCAGCTTAA
TGCATTGTGTACTTTCAGCCTTCAAGCTTTGCCTATCCGCAAAGACTACGTGTGCATTGG
CAATGATTCCCAGACTCTCATTAACTATGTAATTTGTGAAATACTCATGTACTTCCTGCA
CAATATTAGAGTGGTTCCAAAGCAGGGTGTCAGATTTGCTTTACAAGATGCTTCGAATTT
CGTTCTAGTAATGGACAATGAGAAGAAACAGATTTATCTTCCTACTTCCTCCGATCCAAA
ACTTAGGTCCTTTTAGTCTTTTCAACTCCATTCAAAATGTAGGTCTTTCTACACACGCAA
T