morexGenes - Barley RNA-seq Database

Contig contig_89364

Source Contig contig_89364

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_89364 (2309 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_89364

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_80231	1	110 bp	None	Available	Available	LOC_Os09g07820.2, FRAME:+3, EVALUE:5e-15, 13109.m00638 protein exosome complex exonuclease, putative, expressed
MLOC_80232	3	748 bp	MLOC_80232.1	Available	Available	None

CDS Structure of MLOC_80231

CDS Structure of MLOC_80232

Contig Sequence (2309 bp)

>contig_89364 2309 assembly3_WGSMorex_rbca.fasta
TAGTAGTTTTGCAAAAAAAAAAGTATCTCCCTCCTCTCTGAATCGAATCGATTTGAAACC
CTAGCTGACCCATCCCCCTCCACCGCGCCAACTACCTGGGCCGTTGGTGCCTGCCCCTCG
CCGCTGACCGCCGTCCCCTCACCGGACAGCAACTCAGCTTCTCCAGATCTGCCCTCTTCG
CCGCACCGGGGTTTGATTCCCTGGCCCCAAAGATGCGTGCTTCCCTTATCGAGATGCCTG
GAGCATTAGGCCCGCGCGACATTCCATCGCGGACACAGTCCGTTGATGGAGTACGTCAAC
CCTCTCACCGGATTCCGCGTCGACGGGCGCCGTCCCAACGAGGTGAGCCCCCGCTCCCTC
CCACTCGCCTTCGTCCGGTTCCAGCTCCGCTGGCTCTGATTCTTCGCGACCGGCGTCTCA
CAGATGCGGCACCTCAAGGGCGAGGTCGGCGTCATCTCCAGGGCGACGGCTCGGCGCCCT
TCAAGATGGGCAACACCAGGGTCATCGCCGCCGCCTACGGGCCCTGAGAGGTACGCCCAT
GTCCCTCATCTTGCTTGCGCACGCCAACTGTTTGATGCAGTGACTGTCAGGGATTAGCGC
GAGTTATGTACTTGATGATTGGTATTAAGCTAATTTGGGGCAGGTTTTCTGCCATGTATG
ACGTAATGCCCGTGAGGATTAACGTCAGGTTTGTTGGTAGTTAAGTTGTGGATTCAGGAT
GGTATTTTTTCCAAAGAGCGCACAGAATGTTCGATGGAATGTCTATGAATCGCTACTGTG
AAGTTTCTACATGGCCTTGAGAGCTCGCCCACGACTCTGGCATGGCGCTGGCGACTCTGT
TCCGCTCTCTCCAACGCCCACCGGAAGTCCCACGGGCGGCTCTGCCTCGCGTTGACGGTG
CTGCTGCAGGAATTTGTTTCTTGTTTTTATCGCCTTTCTCTTGCAATCTACACCGGATGT
TACACAGTAATGCTTTGTTTACAAGTTTGGGTTTGGATTGATCTTCCCAAGGACATTGTG
TTCAATTGGCATGTTCTGCTTTGGATCAATGTTTCGGAAATCCCATGTTGATTCAACATA
TGTCAGCACTTTGGAGCTTCCAGCTTTGGTGGTAATTTCCATGCCGTAATTAGCCTGATA
GTAAAATACTGATGATAATCACAATGGTGATCTCAGTCTAAATGGGGGAACCATGCCTGG
TTATTAGCTTGTAAAAGTGTCAGTCGTAACTTCTTCCTATCCAAGTCTATAGATAGCTAA
GTAACTAATGAATATTCCATGTTCTGCTTTGGATCAATCTTTCTGGAAATCCCATGCTCA
ATCAGGATATGACATCACTTTGGAGCTTCTAGCTTTGGTGGTAATTTCCATGCCGTATTG
TCATTTTCCTTATGTATGAAATCAGCCTGATAGTAAATACTGATTATAATCATCATGTTA
GTCTCGGTCTAAAGCGGGGGAACCATGCCTGGTGATAAGTTTGTAAAAGTGTAGGTCATA
ACTTCTCCCTCTCCAAGCCTATAGATAGCTAAGTAATTAATGAATATTTTACAGTTATTA
TGTGGAGATCCTCTATCATACACTGTTAAGTCCCCTTTGTGTGCCAGGCTTTGCTCTTAA
AGTTTTGAGATAAGGAATTCACTAATCTGGTCCGAACTGATTGGCTACACGACTAGAGGG
TACCACGAAGTCAATGTACAAGGACTACACCATGCATGCATGACATTAACACCATGGTAC
ATATTCCGGTTTGATTTTAACTTTTTGCCCAGTGGTTTACATCTTTCTTAGTACAATGCT
TCATGCGGCTGAACTACCTCTTGTCCGAATTTTTGCCATCTCAATTATGAGCTTATGTAT
CTGTCCAGTCTTTCTTGAAATATCTTGCTTGTTGTGTAGCCATTTGTTATCATATTTTTT
CTTCAATCATCTTAAGCATACAGGATGCCCCATCTTCAAGTATTTATTTCTCATGCCAGT
TTGGCAGTCAATATTGAGTCAAAAGATTCGTAGTTTGAGCACTGCATTTTAGTTCACAGG
CCACTAAACTTCAGTACAATCTACAACCGTATAATGCGTGTCAAGTAAGAAAACTGAACC
AAAATCACAAGGACAGATAACATGAGATTTAACAACTTGATTACCAAATCGAGCAAGTAA
CTAGGCATGCCTTTCCTCTTTCGATGTTGTAGAACATCATGAACCGAAAATTAACAGAGA
ACAGGACAGCTAACATCATTATTTTATTGACATGTTCTAGAAGCACACCCCTTGCTTCCC
AGTTGCTTTCATGCCTTGCACACACCCCA