Contig Data
morexGenes
Links



Map Locations of contig_89211 (6582 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_89211

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_80195 2 1706 bp MLOC_80195.1 Available Available LOC_Os03g11470.1, FRAME:-2, EVALUE:4e-146, 13103.m01294 protein DEAD/DEAH box helicase domain containing protein, expressed





CDS Structure of MLOC_80195






Contig Sequence (6582 bp)

>contig_89211 6582 assembly3_WGSMorex_rbca.fasta
ATAATATATGTAATTGTTCGTGTATCGATCGAAGAAAAAAATCTTGGTTGGGCCCACTGA
TGAAGTTCGCCCCGGGGCCTTCGAAATCGTTGAGCCGGCCCTGCAAGCAGCACGACGCAT
CCCATGGGATGGCGTGGGCACAACGGGGTTGTTGTGAGCTTTGCGGCACCACGATTTGAT
TCACAGAATAAAAGGAATAGGAAGCAGAAAAGCAGTAGAGATATCGCTGCACAAAAACCT
GTCTCTGAGTTCCTCTGTCAGTTAGAGTTTCAGAGCGAGGGAGAAAGCACGGCTGGGAGG
TGCTCTGGTGAATATCTCCGGCCAACACCATTTCAATCTTCGAGCTTTCTCCAGGACTGC
ACCTACACAATTTTTCATGAAACCCATACCAGGAAAGAACATCTGAAAAATGTACATTTA
GCTAGAGGTTTGTGCCCTTGAGCGCTCACTGATTTAGCAAGAACATGCTTTTCTATTCTT
CAACTGTCGAATAAAATGGCAATCCACCAGCACAAACACTAGCTACAGCAAAACAGAAGT
ACAAAGGCTGGGCGCATACCAAGTTCAGTAACATCGAACAAAGGTATAAAACAGAAGCTC
TGCAATCCTCCAACGAGTTGCGTGGCGTTATTGACTCCGAAAGAACTCGGACGATCAAAG
TTGCCTTAGGTCCGACGATTGCTCGTCCCCGCCGCGTTGTGTTGTGCCGCTCGGCATTTC
GAATCCGACGCTCGGCATTTCCAATCCGACGTCCGGACGAACTCGGAGGCGCGTGACCGC
CACGCAATCACGGCGATATTAGGCCCCTGCCCCGACTCATTCGATCGCATTCTTCCCCTC
CTCCGCCGCCTCTCTCCACATCGCACATACGCGGACGCGCTCTGGTTGTAGATCCCGCCG
GAGGACTCCAGACGGCGATCATGGCGCTCGCATCGCCGTCATACACCCCGGGTGCCTGCT
CACCTCCGTCCCACATGTTGCGTGGCCCCTTCTTCCTGGGTTTCGGCGTCGGCCGCGAGT
GCTGCAAGGCTACGTACGATGCAATGTCCCTATGCTAGCATTTTTTTCTAAAGCGAGCAC
TTCAGCATAGCAACCATAACCTAGACCACGCATTACGCACAGTTTGCGAGACGACAAGGT
CACTCATGTGTTATGCTATCACACACAAAACGGAAATCGTGTTCGGGGCACATGGCCGCT
TGCCGCCAAAGAAGACATCGACATTACAATCACCATTGTCGTAAGACTTGGCTTTGTTGG
TGCAATCTAATTCTTGTACTCCATAAACACCATATTGCAATCTAATTCTTGTACTCCATA
AACACCATATTAGGGCCTTTTTGATTCGCTGGATTTTAAAAACACAAGAATAGGAGAATT
GTAGGGTTGGGGTAGCATTGTTTATTTGAACTCTATAGGGTTAGCAAGGAGTGTTTGATG
CCATAGGAAAAACAAAGAAATTGTAAAAAAGAAATTAAAAAAAATGGAGTGGATGTTAGG
TTTCCTATGAAATGTAGTATAGAAGATTTCATAGGAAAAGATTCTATGGGATTCAATCCT
ATGAACCAAAGGACCAATGTAGGAAAAAATCCTAAGGATTAAGGATTTCAATCCTTCAAA
AATCTTATAGAGCTCCTTTGAATCAAAGGAGCCCTTAATATACACTCGTATCAGGACTAG
GGCTATTACCCATCTCAAGGTCTTGAACCTCAGTAAACTCCTAATCTTATCTCTGTTGTC
TTCCACAACTCGCAGGACGATAGTTTCATCATCGGTATGATGGTAGTGCTGACAAGTTAT
CATTCTAAACTGTGTCGATCACTGGTGCTATGATTGGGCCACAACAACAATGTTACATGG
AAAAGCAGCATGAGATCATGGCTCAACGGTGCACCACACTGGGTTGAGCTTTATTTGTTG
TATGAACTATTTGTTGTATGAACTATTTTTTGTTGCACGGTATTGTGGTACATGAGAGGG
TGCCCAATATACACTGAAAATCCCCGCGAAAAATATACATTGAAAACACTGCATCACTCC
CGTGGAATCCATGGACGTGGAGGTTAGCCCAACAATTGTGCCTTGTATGCCGAAGACGTC
AACTACTCCCCATTGGTAGTGGATTTCCAAGTATGTTGTCCTGAATTCCTTGGGTGAGAT
TAATATGAGTAAGCTTTTCCCGGGCGGTGACAAACTCCTGGATGTGATCCATTGACAAGC
CACGATGAATATTGATCTGGTGAAGGATATCAATTATGGCATGTGGAAAAGTAAACTTAT
AACAGATGTTCATTGCTTCCAAAAGAGACGTGTAAAAATCATATGAGGACCAAAACCACC
TCACAATCGATTTGTGTATATAAGCATTAAAAGAGACATGTTTTTGGCTACACTCAAGTA
AACCTATACAAAAGCGAAATCCAGAAAGGCTCTGATGAGCATGGGAGCTTGCTTGATTTT
GAATATCTGAATTCCTGGGAACTGAGTTCCACAAAAGCAGATCTGCTAGTCCGCGGAAGA
ATTAGACCTTCCCTAGATGCCCAAGGGACACCTCCTGATCAAACCCAAGGTAGCAGTCTG
ACACAACAATCAGCTTTGCCTCCTGAAAAGAGCATCCTCTCGTCAAAACATTTAAAAATG
CAAAAAAAAAAAAGGACTGTGTAATTATCCAAGCACAGCGCCAGCACATGGAAATCATAC
GAGTCTTCATTGGAAACAAAAAAATATGTCCTGCATTTGCTCAGATCCCAAGTTTATACA
GCAATCTGACAGAATCCACCAAGAAATATGGATGGACATATTAGGTCTGCATATTGTTCA
GATTCAATGTTTATACAACAAACTGAAAACACTGAATAACAACAGATGCATAGCGAATGG
CCAAACATGGCAAGGGTAAAAGGGTACTACCTCCCTCCGGAAATACTTGTCATGGGAATG
GATGTATCTAGATATATTTTAGTTCTAGATACATTCACTTTTATCCATTTTTACGACAAG
TAATCCCGGACAGAGGGAGTATATGCAGAGCTAATATATTGCCAATTTGGTGTCGGCTCT
AGCATAGTAAGGCTCATCATTTAGATTGCTGCTCAATTATTATTGTTCATTAAGTAAAAA
TTTAGACGATTATTGGGCACAAACGTCAAGTCACTCAAGCAGAACAATATATTCGCACTG
AGCTTTGCTTAGCCTGGCAATTCACATGTGGAGGAATTATTACCTGGATATTTAACATCG
GTGGCAATTCCATGCGAGTATTAAGCACACGATCTGCAAAACTAATTCTTTTCAGACCAT
ATAGCTCCGAGCTTGTAGTATTCCCCAGGACCAGCCACCAGGCTTCTTGTTTCGCCTACA
GAAAACAGCATGGCAAGTTAAATGCAAAGGCATTTATTGAACTTCAGGAACGAACATCAA
TAAGAAGTCCAAAAGGCAATAATACTGAAGCTAAAGAAGATTTACGAGTAACACATTGGA
GCTAATATAGTAACAGTCAGTTACAAGTATAACATGCATTAGCACAAGATATCAGGAGTA
TACAAACAGTTTCTTAGACCACCGGAAAGCTCTGTAAAAATGTCAAACTCGCAAACTACC
GAAATAGTAGTTTTTTGCTATTTGCTTTGGCGAATCTATGCATCTGCTTTTTCATTGCAC
AGGGTAATAATTCTAGGGAGGCTTCATGATTATCAACACATGGCAAGTTTGATAATGCCA
GTAGCAAATCAGAGTTGTGAGCTAATCTATGGTTATTTGCCCCCTAGCACATTGATTTCT
GCCTGAGAAAAGGGGTTTTGCCTGAGATAGCTTAAGTTACTTGTTGGTACACTGAAACTT
TCAACAAAACTATCAATTTTTTGTATACTATTTCAAATGTTTAAAATTATCGAAAAAGTT
GCATGCGGATTTGTTTATCCAATCTTTTAAATCAAACACCAACTTGGAAGGCTATTTATC
ATGTTAGATTACTCAGTACAAGTATAATACCGCTGAAGCATACATTACAGTTCTCAAAAG
TACCACTATCATGTCAAAGGGTTTTGTAAAGTTACTCTATCCACCTGCAAGTATATGTCC
CTATGGGATCCATGCAGTAAAATATTTTCGATTATATGTACTCCCTCTGTCCCATAAAAT
AAGATGGTTTTTGACACTGTAGATAATACCATAGATATGACTTGCAGGTCGTGAAACTTT
CGCTAGTATATCATTAAAAAGCACTATAACAGAATCTTGCATTTGAGGTCATAAATGGTC
AATGTTTAACTTATGTAACAGCAGTCTAATCCAATCATACAATGCCGTATGTTTGACAAT
AAGATGCAAGCAGTACTTATAAATCATAGCAATTTTACATAGTCACTAACCTTAGGGAAT
TTAGAGGAAAATGCTCTTGGCGAACGACGTGTATTTTTAATTTGCATTCTAATGTTCAGC
ATTTGAGGTTTTGACTGCTCCTTGTGTTCATTCTGCAGCTTAACTTTAACATCAAGGCAA
GGGAAATGTTGCAGATCCTGCATAATACAAACATAATATTCACAAATATGATTTTCATTT
CCATCTGGCAGTACGAGGAATTGAGGATATTACCAAATGACCTTTATTGCATGGATGACA
TAAATTATCCAGTTATACAAGTTGTAAAGGTACCTCCCAAAAAAAACAAGCCGTAAAAGA
CAACTGGACAAAAGGAAAGCGTGGCCTTGCACCACACTACATGAAAACTCAAGGTTTCAA
AAACATTTTTGTTCCAAACAGAGTATGCCTATCGTTAATATGAGGCTAGAGACTCTTGGG
CACTACACAAAAGCAGAAGTGGCTGAGTCTAGCACAAATAATATTTCTCAGTAATATTTC
AATAGCAGATTTGAAAGCACTTCTGTACCATGCTAAAGGTAGAAATACAGATATGTAACT
GCCAATCATACATTTCAGCGGATATCTAAGATTGCGAGGGAAACAGATGTTCTTTTATAC
GAGTGTTCATCCAAAGGCAGTACAATGGAAGTCCAAAGTAGTACCTGATACAACTCTGCA
GCAGAAAATGGTTGAAGCAACTTGTGTAATTCTTCACGAGAACGATCTAGCAAGCTCAGA
ACTGTTGAAACTCCTCTGCCTTTAAGATGATCTAGAAGGTTATCATTCATGGATGGTAAC
ATCCAGAGTGATGAATCTCTCTCAAACCAGAGACCCTGATAAAACAAAATTGAAGTTCAG
TTGATGAAGAAAACCCCTATTTGGAATTCTGACACTGGTACAATGTTATCCTTCCATCCA
GAACCTAACTACCACAGATCATTTAAATGAAAGAAAATCTTAATCAACAAAATTCACCTG
TATGATCATTTGTAAGAGATGCATACATGTCAATGCACTTGAAAGCCATCCACTGTTGGC
ACATACATCAATCATAGCCTGTATAATACGTATGCTCTGATCAAGAATTGACTTCAAGTC
AGTGATATAGTCGCTAATTGGTAATTCTGCTCTGGAGAAGTGTGCCTGCAAAGCAAACAT
GGAAAGAAGAAGGTATTTAGCACCTCACTGTACATTGTAAAGTACGTATTAGCCTTAACA
TCAGTTGAACTCCCCTTACCTGGAAGAGTAAATTAGCCTTAACATGTGGGTCATCAAGGT
GGTGCTGGTCAACTGAATACGGGACCTTTTCGCAGAGTGTTCGATTCAAGGTATCCTGAA
AAGGAGAAAAACATTAGTGCAATCAAAGAGATAACATTGTGACAAAATCAAGTTCAGGGT
ATTATACTAAGATCATAATGTTTTGATGGACTGGATGTATGGTATTTTCCACCTCCAAAC
AAATACTCCCTCCGTCCCAAAATAAGTGACTCAAAAGTGACGCAACTTTGTACTAAAGTT
AGTGCAAAGTTGAGTCATTTNTGAGTCACTTATTTTGAGACGGAGGGTGTAGATAATTGC
CTTGAGTAAAAAGGAAAACCAGTTTGCTCTATTCTTCTAATGTGGCGAAATTGGATACAA
GACATTTCAGATTCGCCGTTGCTCACTCTGAATTTGTGGCCTTCCTGAAATGCATTTGCC
AGAACACGCTGCACAAATTACTATGATATTGTTCGTCTTGGGAGGGATCACGTGAAAGTT
CTGTTTTTCCATTGTGCATGCGTACTTGTGAACCTATACCTATGGACTGACCGACTGATG
CATGCTGCAGTACACGGTTGTGCTTTTTATGCCTCATCTGTTCTACAAAAAGATCTGCTG
TGAATTGCTAACACTTTTGATATATATAGTGCTATGATGCGCGAAAATGTCTTTTCGAGC
TCGGGCTCCATGGAGGCCTGTTTTTGAAAAACCCAAAATTCATTAAAATTCATATTTTTC
AATTTTAAAAAATCTGTAAAAAAATACAGATATACATGGAGGCATAACACGCATGTGTGT
GAATTTTTAGGACGAAATACGTTGAAATGAGGGTTGTGAAAAAAAAATCTGAGGCTTTTG
ACACACGATACTATTCATCCTTTTTTTTTGAGAAAACGCAACAAAGCCTATGCGTTTCAT
TGCATTGAAGAGAGGGGGGGGGGGGTTACATCCTCCTAAGAG