morexGenes - Barley RNA-seq Database

Contig contig_89042
Source Contig contig_89042
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_89042 (5833 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_89042

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_80162	4	2157 bp	MLOC_80162.3	Available	Available	LOC_Os09g08072.1, FRAME:+2, EVALUE:0.0, 13109.m00665 protein glycosyl hydrolases, putative, expressed
CDS Structure of MLOC_80162

Contig Sequence (5833 bp)

>contig_89042 5833 assembly3_WGSMorex_rbca.fasta
TATATATTCACACATGTATCACGGTTTCCGGTTAATACAATTANNNNNNNNNNNNNNNNN
NNNNNNNNTGAACTAGGAAATATAATAATACCCATTTTACTATTGCCTCTAGGGCATATT
TCCAACAGTTGCACCTCCAACCACCAACCGGAGCAAGACCACCACCGCACACACGCACCT
AATGGACGCTGGCCCCATGCGCCCAAATATCCACCGAAGCCACCAGATTTGGACACCGGG
ACCCACGTCTCCATCGCTGCCACCTGTCTGTGTTGCATAACCGTCGGCCCCTCCATGGTC
ATCGCAGCCACTCGCAGAACAGGACGCCGTGGCCTGATCTGCCTCATACCGCCCCTTGCA
GCCTAATAAGCCGATGACCGACGACACGCATCTAGAGCCCATGCGCAGCCAAAAAGCTCG
CTCTCGTTTGACCCCTCTCCTATGCAACAAGGCTTACCACGAGCCCACCCGACGGTAGGC
CCTCCGCAGATCTAGCTGGGGCTCACCCGGCGTAGTGCGCCCGCGTCCCACGTGGCCCGC
TCATGCCCAAGCCGCATCCCACGTGGCCATCGCGCGCCCAGCCCGTAGCTCAACGCGTCA
CCACCAGCCTCGCCTCGTCGCTCGTGAACCTCAATAGCCCATCATCAAAGCAGACGAGCC
CCACCTTCGCAGCCCACCACCAGATCCCGCGTTGTATGCCAAATCCTCACCCCACGTGCC
CGCGCCACCGCACCACCCCGAGCGCGCGCAGCTGCTCGAGCTCCCGCCGAAAACACCAGC
CTGCGTCAGCCACCATCGGACGGGGGGACAAAAAGGGGCCCGTTGCCACCGTGCCGCGCG
GGCTTTGCCCGACGAACGTTGCCGACGGCAACGAGGGGAGGACAGGGTGATGGGTGGACT
GCTAGGGTCGGCTACTAGGATTTGCTTCCGAGCCGTCCGTGGGGGCGACGTGAGAGCCAC
CATCGAGGGTGCGAATAATGGAAGGGCAGTACTCTGCGCCGGCGCGCCGGCACTAGGTTT
GGGCCGGTCGGTGCCTAGCCGTCCAATTTGAACGCATTCAGTCGTTGGATTGGGACTTCC
TCCCCGTGTCTTCTTTCTTCCTCATGCTCCCCACACTCACACCACCATGGATGGGCAAAA
CGACTAACCACGAAGCACCACCCCGTGCGCTCGCTCGTCGCTGCCGGTAATCTTCCTCAC
CATCGGTCGTTGTCCTCACCACTGATCATCGTCCTCGCCCGCAGTTGCAACTCCCTTGCT
GGATCCATGCATGCAGCAACTTTCCTCGCCGGATCCATGCATGCAGCAACTTTCGTCTGT
GGTTGCAACTCCGTCGCTGGCGGTGGCAGCTCCGGTAGTGGCGGTCGCCGATCGCAGCAC
CCCGACCGCCGTCACGGGTCGCAACTCAGTCGTGATGGATGTAACAAAACGTTATGCCGG
TTGTAGCAAAATGAAACACCGCTTGTAGCAAAAATCGCGACGGCATGTGCGATGTAGAAA
AATGTGATGCCGGTGGTAGCAAAGTGCGGTGCCGGTTGTAGCAAATTTCGATGCCGGTTG
AAGCAAGTAGAAAATTACGCTTTCGGCCATGGACGTAACTTCGCCGGCCATGGAGCAGTT
GAGAGAGGGGATGCAGCTCGCCATGTCGTCGGTTGTAGCAAAATAAAACACCAATTGTAA
CAAAAATCACGACGGCATGTGCGATGTAGCAAAATGCGACACTGGTGGTAGCAAATTTCG
ATGTCGGTTGAAGCATGTAGCAAATTACGCCTTCGGCCATGGATAAGGAGAGGAAGATCT
ATGGGGGTTAGAGGGCCAACTGTGACGGCGACCGATGGTGTGGATTGGGTGGAGGAGCTG
TGATGCCGCCGTTTTTTTCGTTGTGCGTGGGTGGACTGAGCTACGACGACGCCATACCAT
GCGGCGGCGGGGTTGGGGAGGGATGCTTGATGGATGGGATGGATCCCGTGGCTCGCGTGC
GTCCGGTGCAGCGGTTCGATCGACGGCGTCGGATAGAAACGTTTTCATAATGGAAGCCTT
CTACAATAAAATTGTACCCCTAGAAAAATGGAATGTGTGAAACCGTGTAGTCTCGACGAC
GTGGGATGCTTTCGTACTCGAATGGTGTATGTTGGAATATAGAATTCGTGCGAGAGATTT
ATATACAAATTGCTGGGTTGAAGTCTTTGTGATTGCGAAGTTTCGCCGGAACAGAGAGGA
TGGCGGTGTTCTTCTCTCCTGTGGCAAGCAAGAGGCAAAGCGTCTCGTCTGATCATCAAC
CATCCCAGTCACCAGCTAGTGCTAAGCGCGTCAGGCAGGACGATAATACACTTGACATTG
TTCACGCGGCCAAGCCTTATTGACCTGGACTAAACTTGGGGAATTGGGATTGCAACAAAC
CAAATTTTAAAACCAAACGTCACTGTCCGCTCGGCCCAAGTCTTATTGACTTGGATTAAA
CATCGAGATCCCAACGGCTATAAAGTTGGCATAAAATCCTCTGCGATCCTGCAAACCAAC
AGTAGCTTTGTCTCGTCTCCGTCTTCCCCTCCGATTGGCAAACCAACAACCATAGCTTTT
GTCTTCTCTCTGTCTTCTTCCCCGCTCCGCACCATGGATGGACTCGAGCACCCGCGCAAT
GGCCGGACAGCCTACCACTTCCAGCCGGCCAAGTTCTGGCAGAATGGTACGTGGATCGTG
TTATCATTCTCCCCATCCACTTTGATTTTGTCCAAGTCGTTTCTAACCATTTTGCGATCC
TCGTTTGTGTCCCTGGATTTGGACGAACACGCCATGGATCGACGGAAACCAAACAGATCC
CAACGGTATGTGCGATTTATTTTCGTTTTGCTGAGTCGTCCATACATGTCGATTGTATCA
TGTATCATGGGGATGAGTCTTAATCTTGCATTTAGTTCCCAAAGCAAATCGCCTTTTCTC
AGACGAAATTACTACTGCTTACTACGGGAAAATGCTGTCAGTTAGTTAGCGAATGATGGA
TCTTGGTTTAGTGCAAGATTAATGGCAGAGAGACGGACTGACAGTAATTTTCCGTTCTAC
GGGCAGGGCCGCTGTACCACAACGGCATGTACCACTTCTTCTACCAGTACAACCCCCATG
GCGCCACCTGGGGCGACGGCACGCTCTCATGGGGCCACTCCGTCTCCGGCGACCTCGTGA
ACTGGGCCGACGTCGGCAACGCGCTCGACCCCACCTCCCCGTTCGACGCCAACGGGTGCT
GGTCGGGCTCCGCCACCGTGCTCCCCGGCGGCCGCCCGGCCATCCTCTACACCGGCATCG
ACGCCAACAGGGTGCAGGTGCAGAACGTGGCCTTCGCCAAGAACCCCGCCGACCCGCTCC
TCCGCGAGTGGGAGAAGCCCGACTGCAACCCGGTCATGCCCATGCCGGCGGACGTCACCG
GCAACAACTTCCGTGACCCCACGGAGGCGTGGCGCGGCCGCGACGGCCTGTGGAGGGTCG
GCATCGTCGCTGAGGTCGGCGGCGTGGGGTCGCTGCTCGTGTACCGGAGCGCGGACTTCC
TCCGCTGGGAGCGCAACGCCGCGCCTCTGCACGCCAGCGACGTGCCCGTGCTCGAGTGCC
CGGACCTGTTCCCGATGGCGCCGCCCGGCGTGGCGGAGGGGCTCGACGTGTCCGCGAGCG
GCGCCGGGGTGCTGCACGTGCTCAAGCTCACGGACTTCGCCAAGGAGGACCACTACATGG
TCGGGCGGTACGACGACGAGGCGGACACCTTCGTGCCGGCGGAGCCCGAGCGCGGCGGCG
ACCCCGGCAACTGGCGCCGGCTCGACCACGGCCACCTGTACGCGTCCAAGTCCTTCTACG
ACGGCCGCAACAAGCGGCGCGTGCTGTGGGCGTGGGTGGACGAGAACGACGGCGGCGGCG
TCGCCAGAGGGTGGGCCGGCATCCAGGCGTTCCCGAGGGCGATCTGGCTGGACGCCGACG
GGAAGCGGCTGGTGCAGTGGCCAATCGAGGAGATAGAGACGCTGAGGAGGAAGCGCGTCG
GCCTGCAGTGGGCGACGGAGGTGGAGGCCGGCGGCAGGAAGGAGATCGCCGGCATCGTGA
GCTCGCAGGCGGACGTGGAGGCGGTCTTCGAGATACCGAACCTGGAGGAGGCAGAGACGC
TGGACCCGAAGTGGCTGCAGGACCCCAAGGGGCTGTCCGCCGAGATGGGCGCCTCCGGAC
ACGGCGGAGTCGGGCCGTTCGGGCTGCTGGTCTTGGCCTCCGGCGACCTGGAGGAGCACA
CCGCCGTCTTCTTCAGGGTGTTCAAGCACGATGGCAAGTACAAGGTCCTCATGTGCACCG
ACCTGACAAGGTGATTTTCCCCTGCCAAAATCTGATCTTAGGAAAGGCTAACAGTTTTTT
GGCAGTACATAAATTTTCATGGCGAGCTTGAAAAATGCGCAGGTCGTCGAGGAAAGAGGG
GATAAACAAGCCATCCTACGGCGCATTTCTGGACGTGGACGTGGAGAAGGACAGGAGCAT
CTCGCTCAGAACACTGGTGAGTTCAATCAATCCCTTTTGGCTTGAAAAACTACTACGCAC
GGATAACATGCTACCAAGCAGGCAGAGATCGTTAACGCACGAACGAATGGATGCAGATCG
ATCACACGGTGGTGGAGAGCTTCGGCGACGGCGGGAGGACGTGCATGACGGCCAGGGTGT
ACCCGGAGCACGCCGCGACGGGCAGCAGCCGGCTGTACGCGTTCAACTACGGCGCCGGCG
CCGTGAAGGTGTCCAAGCTCGAGGCGTGGGAGCTGGCGACGGCGGCCGTCAACGGCGGGG
GCGCTATGTAGCTTGGTTGCGTCGACACTGATGCATGATTTGGAGCCAGCTCGAGTGTGA
ATTTGTGGTGGTTTTAACCTATATTGTTGTTCAATAATGAAACATTCTTCAACAAAAATA
GAGATGAAAAACAACAGCCGTGTCGGCGATCTGTCGGTGAATTTTGTGTAACCTTCCCCT
TTGTTATTTTGCATTCACGTACGGATGTGGACTTTTGGTCGTGCGCGCTGTCATGTGCGA
CGGACGAGCAAGCGTTCAGCAAGCATGTGGGCGCGTGGTCAATTAATTTGTGTTTGTGTG
GTTATCTGTGGATTGTTGAGACGAAATTTGCGCTGAACGACGGCATCGACGACTTGCTAA
ATGTGCCCAAGTCGCTCTTTTTTTCCACATCAGCGCCTGAAAGGCTGGATCCACCGGTCA
ATATGGCCATCAAACGGACCCAACACCACCAGAAAAGTTGTGTGTATTACAAATACAAAT
AGTCAACCGCACAATACAGCAAATCCAACGCGCCGATCCAAACAAGTGTTTTTGTTCGTT
TGAATCGGCCGTCCGTTCCTCGTCGTTTTGATTAACATCTAGATCGACAGTGTGTCGAAC
GTCCGTGACCCATAATTATCGACATGACCGGCTGATCGCCTTTTTTTAATAAATATGCAC
GTGTTTTACATTATTTGTCAAGCAGCATATAAATAAATAGCATAGTTTCATTATCAAATA
AAGCATAGTTTTTTAATAAATAAATATAGTTTTATAAAGCGAATAAAAATTAAATTGTCT
TAAATACATATGAAAAAAATACATTTATTGGTTGTCAACATGAGCCCTCATATGCTCAAC
CAAATCATTTTGCAGCTGCATATGAGTTTTTTAATCACACATTTTATAATGAAATTGGAT
GAACCGTTCAAACTTTGTCGCCCCTTCATGCTCACGCACAACATTCTCATCCTGAAACTG
AAAACCCTTGATCGTAGATACATTCCGGACGCTCATCTTCTACGATTATATTGTGCATAA
TCACACAAGATGT