morexGenes - Barley RNA-seq Database

Contig contig_88836
Source Contig contig_88836
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_88836 (8171 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_88836

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_80136	2	754 bp	MLOC_80136.1	Available	Available	LOC_Os02g20280.1, FRAME:+1, EVALUE:4e-46, 13102.m29150 protein conserved hypothetical protein
MLOC_80137	1	3466 bp	MLOC_80137.1	Available	Available	LOC_Os04g52860.1, FRAME:-3, EVALUE:0.0, 13104.m05431 protein TKL_IRAK_CrRLK1L-1.9 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed
CDS Structure of MLOC_80136

CDS Structure of MLOC_80137

Contig Sequence (8171 bp)

>contig_88836 8171 assembly3_WGSMorex_rbca.fasta
GGGTCTATTACGTTTGAACTTCTATCTAGTCGCTCCATCAGATATGAATCTAACAATGGT
TGGGTCATTCAGATCTATCGTAAACGTCCAAATGTTTGAAAATTACAAATCTTCATTTTT
CAGTAGAAGATAAAAAATACGGTGCCAATATGCAATGGGTAACTAGGCCAATTTAGAAAA
GACGAAGAAATTAGAAATCTCCATTTTTCAGTAGAAGATAAAAAATACGGATCTCCATTT
TTAAAAAAATTAAAAACACGCTAGAAGGAGGGCTCGAACCTCCGACCTTGTGGTTAACAG
CCACACGCTCTAGCCAACTGAGCTATTCCAGCTACACATTCATAAATTGGAAATTAAATT
ATACGAATAAAACCGCTTGTGTGCCAGTTTGGTTTACACAACCAGGCCGTAGGGCACAGG
CCCACGAAAACAAATCTCCCTCCGCCCTCCGCACTGGGCCGTGCCTCTCATCCCGCTTCG
CTGCTGCTTCTGCTCCGCGCCGCGCTCCCGCCGGCGTCGCCTCAGCAGCTCTCCAGCCGG
CCAACCGCCGCACGGAGCCCTCGCGGGACAGGCAGGCCACGTTCGGCCGCGATGGCTGCC
GCCGCCGCGCCAGCCTCCTCTTCTTCCTCCCCTGGCTGGGACTTCACCTGGTGACCCCCT
CTCCCCCTCCTCCTCCCGCTGATGCCTGCCGTTTGTCGTCAGATTTATTTCTCACCGCGG
CTTGTCCGTCGACGCGGTCCGTCGCTGTGCATCCTAGATTTCTTGTTCAGCAGAATGTGC
ACCTTTCTTTCCGCTAAGTGATGGCTGCTGTGTTATGTTTCTTTCCACCTGCCCGCTTCG
TGTTCGACGGATTGCCTGGAAGAAGCTAGCGCTAGTTTTTTTTTAGGCGAAAAGGAAGGC
ATGGCAAACTCACCCTGATCTTGTGTTCCCAGGTGTAATCATGAACTGTGCTGTTTTACA
AAATTATTGCTGTGTGTATCGTTTCTTAGCAACCTGTGACGGTGTACTGATCGATTCGAG
ACCTTGTTTGCATTGTATTGGGTAGCATATAGCTCCAGCAAATGATTTCATTAAAATTTT
ACCCTTCCTGCAGTTCATGCCAATGGTTCCTCGAGAAATTCTAGGGTGCGCTAACAGCCT
TTTTGTTTGGCCACAGCAACTTTGAAGTTGACTATGGATCTGAAGAACACGCTTCCATTG
TGTACAAGACATTAGCTGTTGACAAGGAGGTAAAGAAGTTGAATCATACTCCCTCTGCAC
ACTAATGTAATTGAACTCCAAAAAACGTCTTATATTAGTGTACAAAGGTTGTACTTTTAA
AACAAGTCTCGTGATTCCATCAACTCCTAATGTTTTCTCTCTGTCCATGACATGTTAGTC
AGTGATTTTATTTGGTGTGTTCTGTGTTGCAGTTGCAGCCTGATAAGGTTCGGAGGGAGA
TGACTGTTTCTGGTGGCAAGCTCCTCGTGTGAGTAAATCCATACCATCTTTTCTAAGAAT
CGCCGTTCGATCACCGCGTGAAGCAAGCGTAATGGTCTAATCCCTCGTATTTGTGAATTT
CAGGCGCTTTGAAGCAGTAGAGGCTCGATTTCTGCGCGCGTCATTCAGCGCATTTGTTGA
TCTTATGGTGCTTATCACGAAGCTTGTCGAAGAATACGGCGTAAGCAAGGAAGAGCATTC
CTGATAAGCGATATGGTCTAGTTAATCATACATGTGATCATTTGGACCATCTGTATTTGC
CTCGGCTCTTCTCCTGTGAAGGTACCATGTATTGTGATTCTGAATGAAACATTTATACTC
TGTAGTATGGATTACTTCCCATTGAAATTTCATTGTAATGAGAAAAACCTCCAGAGCCCC
TGGGGTGAAAATTTCTCATGAATCCGGGAGGAGCAAAGAAACATCAGATATTAAGTCGGC
AACATTTGAATGAGAAGCTCCATGTGTTGAGGGAGTGACCCTGAGCCACATGATTTTAGC
TGAGAAGCTGTGCCAATTTCGGTTTACGAGTTTAGTGCCAACTGATTTCTTCCCTGCCTC
TGTTTAGAGGTCGCCTGCCTTGTTTCTAGTCAGGGGAGTAACTGTTAGCCCTGAATCTGA
TCACCAAGAGCCCAGGGCTTAAAAAACACTACCACCAAGAACTGAAAGTACGTCGCTTCA
ATTGTTCGAAGTAATCCGCTAATTGTTCAGTCGGATTGCATAGAGGTGGCGCAAACCATG
CTGGAGGGAGGCCACTCCACAGGTCTAGCTGCTGCAGTATATATGAGGATTGGCTACATC
AAAGTACAACATTAGACAATGCAACATCACAAGGCATTATTGGAGGTTTAGACAGGAATC
CGGTGTACATCCAAAAAATTACAGCGAAGGGTGAAGCTTACATGGGAACGCAGTAGCGAC
ACCCAAATAATTGTTTGGACAGGAATGTGATGCACACAGCATTCACGGAAATATTAGAAA
AACAGTTCCACGGCACACACACACACACAAATAGGTTGAAGGATGGAATTATATTATTAG
TAAGATTTATACAGGTCACACAGGAAGAACTACATGAAACCCAATGGGTTGAACAAATCA
CATGATATAGCAGGGTGTCAACGAAGAACTTGACGCGTCCAAGTTTTTTTGGGGGGTGGG
GAGAGGGGGCAATCTACAAAAATCCTATTATTCTACACTTGTCGAGCAGGACAATGCCCA
AAAGAATAAGAAGAAACTAAGTGAACAATATAACACAATTTTACATCCAAGACCACGGCT
ACGATGCAATCAGGATAGTTCAGTGGGTTACCAAACGTCAGAAAAAAACTTCAAGGGGCT
GAATCTTCTCTGATATCTGATTTCTTTGGGTGATGCTCCTCTTCCCCCTCCCTGATATGA
GGCATGCTAAAAGACATGTCAGCGAACCCCAGTTCACTGCTTCCAAATGACTCGCAGTCC
ACGTTGCGTTTGTACGCTTCATGGAGCTGCAGCACATACTCCAGGTGCCACAAGACCTCA
CCCATTGATGGCCTGGTTCTCCCATCATCAGCAAGACACTTCTCCGCAATATCACCAAAC
TTCTTCAGGGATTCTGGCGAGTAGTCACCATCCAGCCGTGGATCCGCTATTGCTTCCAGC
GAACGCTGACGCTGCCATCTCATAGCCCATTCTGCCAAGTTAATTTGATCCTTCGGCACT
GAGGGGTCTATAACCGGCCTGGCACAAGCAACTTCAAAGAGCACCACACCAAAAGAATAC
ACATCAGATTTTTGTGTCAATTGCTGCCTCCGGAAGTACTCTGGATCAAGATACCCGAAG
CTACCCCTGATTGCTGTACTAACATGGGTCTGGTCCAGTGTTGGTCCAGTTTTCGACAAC
CCAAAATCTGCTATTTTTGCAACAAAGTTCTTGTCCAACAGGATGTTAGTAGTCTTAACA
TCCCTATGAATTATACCTCGATCTGCTCCCGTGTGGAGGTAGTGAAGGCCCCTGGCCGCA
CCAATGCAGGCATCAATCCGTTGCTTCCATGTCAAAGGTGGTAGGCCACTTCCATAGAGA
TGGCTTCGCAATGTCCCCTTGGCCATGTATTCATAGACCAGAATCATCTCCTTCTGCTCT
TCACAATAGCCAATCATCGCAACAAGGTGCCGGTGCCTAAGCTTGGAGAGCATCTCAATC
TCTGTTTCAAATTCTTTTAGGCCCTGACCACATAGTGGATTTGCACGCTTGATAGCGACT
GTAATGCCATCATCGACCTCACCCTTGTAAACCTTGCCAAAACCTCCAGAACCAATGACC
AACGACTCGTCAAAGTTCTTTGTGGCAGCCCTAATATCTGCAATGCTGAATCGTCTGCCC
ATCCTATGACCAATGGAAGATGAATTGCGTGCCAGGGGTGATTTTTTGGATGCGCGGGCA
TCTGTAGTGCTTTTCATAGCCTCATGGAGGACCAGAGGGTGCCAACCAGCAGGGACCTCC
TCGTCAACAGCTTTTCGTTTCCTCCTTACATAGCACCATGAGAATAGAGCAACACTTGCC
AGTACCACAAAAGCGGCCGAGCCAATACCAACTTCCTCCCATAAACCTATCCTGCTCCGA
CCCTTGGAACGCCCCCTTTTGTTGCCCACATCAATATGACCGAGAACATAATCAAGGCTG
CCACTCCTGCTGAGCTTGAATATCTCCAAACCATTGAGAAGTGCGTCTGTACCTGAAGCA
CTGGTCATGGAGTCCGGCCCTAGCTGGAGCCAAAGTGAATCCACCTGCTGCGGCAAGCTG
TCAAAGTAGTCCTCATGATATGCCTTGTTAATACCTCCGGCCCTGTCATACACATCGTAG
TTCTCAGCAGCTGTCTTGTTGTTGATGTAGATCTTGAAGATCCTCTGGCTGGGCTTGTCA
TAGACAAGCTCGCAGAAATGAAGGCGAACCAAGTAATCAAAATTGGGGTGGACAAAGAAC
CGCCATGTCACATTGAACCGCTTGTCCATGACCATGTTGTTGCCCATGATTCTTGCAGTC
TCATAGACATCGATGGGAGCAATTGAGGAGTCGTTGCTCGAGACATACTTTATGGCTGAA
GTATTGGACACAGTCAAAGCAGCATTTGCAGAAAACATGAATGCTTCATCAGTGTACCAT
GGTCTATGAAGATGCTGATCATGTGAAGATGCAAGTGCAGGCCCTCCAATATTCAGCCGA
TACATAGTCTCGACAGCTCGGCCGCTTAATTCAGGAGGAATGTGCACATCCACACCACCA
ACTTTGTTCACCGTGTCGTTGAAGGAATTATCTGGAGCGAGCACCACCTCAATGGCATTC
ACAAACGCAAATGAGCCAGGCCTTGGATCAAACTCAATCTGCAGGCGAGAAGTATTGACT
GCAAGAAAGTACTCCTTGACAAGTGCAGTGGCGGCTGAATTGCTCACTGAGTTTCTCCAA
ACAATCTCCTCCGTCACGTTAAACTTGGACACCAGCTTGAACTCATTGGCGACGACATCA
AACACCGAACTGCTTGCACTGAAATTCCTGAATGTGGACGGGAAGAAATGCAGCCTGACG
CAGTAGTTCCCCGGCAGCAGGCTGAAGTCATACCAAGATGTGGTGGTAAAGAAGCGCGCC
GAGCGGTACACCGGCGCCATGATTTCACTGCCATTGCTGCCCCCGGCCAACAGAGCAGCG
ATCCCCGGGCTGCTCAGGGTGAAATTCAGGTCAGGGGCCATGTCGCCGATCCATCTCCGG
CCATCGGCATCGGCGGTGGCGTTGGAGCCGCAGCTCAGAAACAGCTCCCTCCCGTGAGCC
TTCAAGAACTGCAGGTTGGCGAACACTATGCTCACGGCGGCCAGCACGAGCAGCCTCATC
TGGAGCATCGCCCACAAGTCCGCCGCAGGGGCGGATCTAGACGGTGCGGCGGCCGGGTGT
GCGCCTGCCGGCACACCCGAAATCTCGTGGAAGTCAGCTGGGCTTAACTGTTCACCGGAG
GGCAAGGGGCCCACCAATGGGTAAGACCACGGACGGGGCCGAGACGGCGACGGGCGAGGT
AGAACGGGGACGGCGATGGCGGCGAGGCGACGCGCGTGAGGGGCGGAGGAGCTGGGGCCG
GCGACGCCGGCCGAGCCACGGCGGGGCAGCAGCTACAGGCAGGGCACGGTGGATGGAGGT
GGCTGGCTGCGAGTGGAGGGGTTTCAGAGCCGCATTGGATTGAGGGGAGCTTGAGCTTGG
TTTGGCCTTTGGGTAGGTCGGGATGATTCTCTGGGGAGAGGGTGGGGAAGAGGAAGAAGA
CCGGAAGAGGGAAGAAAGGGACAGTGGACTGTAGAGGGAGGAGGGGGTTGGATCTCAGAT
TCTCCACACTGTACACTGAGAAAAGAAAAGGAACCATCACTGCAAAGTTTTTTTTTTTCC
ATTTTTCTAGAGCAATCGTTTACTCTCTCCGTCTCAGATTATTCGTTGTACAGATGGATA
AAAATAAATGTATATAGAATTAAAATATATCTACATACATTTATTTTTATGACAAGTATT
TTCGATCTGAGAGAGCATTTTTTTTTTGATGCGAGATTTAGAGCCATTGTATATTTTCAG
AACCTGAATAAATTTGACTTTTCAAGAAAGTTGCATCGTTTGCATTTCTGAATATAATGT
TTAGCCGTCAAATCGGTGCACCATGCGGTGGCGCTAAGGTGAGGCTCATGAGAAATAACA
GAGATTTAGCTCTTATATCTCCGGCTCTTTCGGCGGTGACGGTTTCTTCTCTAGGACGCT
AATCCGGTAAGACCGTTGCCTTGAAGATTTTTCGTCTGCGATCAATAATGATAGATCGGC
TTCGGGGATGGGGCGGCTTGCGACGACTATTCATCGGTCCGTTCCGGATGATCTTGACGG
TCGATTGCAAGGGACTTTGATATAGTTGTTTAATTACTGAGAGGCGCATGTACTATTGGC
TTGGTTAATTGATTTGATTGTTTTTCTTTTGGAAAATGACATGCAAATTTTAGTGGATTT
AACAACGATCCTCCATGGTAGCTACTACTAACTAGGTTACTGGGACGCCGCAGCACTCGC
AAACTGAGCGTCGTAAACAAGCAAACTTGTGTCTCAAGTCTTTAGCCAAGCCTACACCAG
AAGTTAACTTGTTGAGCCAGAAACGACTTGCAATGCCCTGTTTACACCACTCCCCAAACC
CAAAGCACGGCTGGCTTGGCGCCTTGGTCCTTGAAGTCAACAATTATCCCCCAAGAAATG
CAACAAGGCCCACGAAGCTCAGCCAAACGGCTGCTTTTCTCCCCGATGAAAAGCAGGGCC
GGGTCGAGTGGCGGGAAACTGAGGATCCAGTCACATTCCACCCGTCGCCATTGGGCGCCC
GTGCCGTGACCGACTGCGACTGCGAGGGTGGTGCGTCTGGTGGTGGGTCACATGATGCAT
GGGCCGCGCAACACATGGCCATGTTCCCAGCCTCCGCGCATCAGATAACGCCACGCCAAT
GACAATGATAACAACGCCCCGCCCTTGCCCTAATTAGGTTCCGTTCCATCGTCCCCGGCA
TGATTGCCCGAATGATTTCCGCCCCTTGTCTCCGTCGTGCGCCTAGCGGCATCAGCTCGC
AACTGTTTCCTCCGCCCACACACACGACACGACACGACACGCCACGCGTGTCAGCACCCA
CCCTTCTGTTACGCACCAACGTTTTATCGGGTGCGCTGGACCGTCATCGGCTGATTTTTG
ATGGCTCGGAAAAAGGCAGGTCTCGTTTCGGTTTGGTTGATGACAAAATGTACTCGTACA
ATAGTATCACGATTGAAAAGAAGTGTAGACCTGAATGTAGAGACTTGGCAACCCCCGGCA
CCAAGTCCACGCCTTTATTCTATTATTATTATTACGCTCGTCAGAGCAAAAAAGTCTGCA
CCATTTTCTCATCTTTTAAAAGAAAGACATAAGGACTGGGCAAAGCTTTGCGGATCACAT
CGAGCAAATGAAGAGAAGAATGGTTTTGGTCAAGGGTGGGAAGCAGGGAGGAAGCTGCCT
GGCCTGGGGCCTGGGGCAAGAACGAACAAACAATGAAAGAAACAAAGCCTTGCACTGCAG
CTTCTGAGTTCCCGCTGATGATAAGCCTGCGGCATGTGGCCTCTGCGTCGCGTGTCAGAG
CCACGAATAGTTTAACCAACCGCGCGAGTAAACAAAACCCAGAGCGGCGTAGGGGTGCGG
AATTCCTGCCGAAACGATTCGATGGCAATCATTCATTCAAACACGGCGTACGTTTGCAGG
CGTAGAAAACGCGCAAGTTGACGGTGTTTTTTGGGACGCTGGATGGGTACCTTTCGATAG
CACTACTAGTCAGTAGTAGTCACTTGCAAGTTGCAGCGAGTCACAGTGCTAACCGCTAGG
CATAATACAGAGTTTTATCACGAAAAGCGGTAGGACGTACTAGAAAGCAAAACAAAAGGA
ACAATCGTTTTGCTTGGTTACGGCATCCTCAATGCTGACGTGCAGATATTTTTGGTATAT
GTTCATTTTTATATTTGGATATGGTCCGTGGATATGACAAAGAGAGGGTCACTCAATGTT
AATCAAAAAAATATTTGATTGAGGGTAGAAAAAAATAGGTGAAGCCATGTATTTGGAACC
GGGACTAATGCTAGTCCCGGTTCGGCCCCGTACCGGGACTAATGGACCTCCACGTGGCGG
GGCTTGGAGCG