morexGenes - Barley RNA-seq Database

Contig contig_88832
Source Contig contig_88832
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_88832 (7380 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_88832

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_80134	1	390 bp	MLOC_80134.1	Available	Available	None
MLOC_80133	4	3209 bp	MLOC_80133.4	Available	Available	LOC_Os02g39520.2, FRAME:+1, EVALUE:0.0, 13102.m04372 protein transposon protein, putative, unclassified, expressed
CDS Structure of MLOC_80134

CDS Structure of MLOC_80133

Contig Sequence (7380 bp)

>contig_88832 7380 assembly3_WGSMorex_rbca.fasta
CACCCGGGTTCCAGGCTCCCTCCCCCGAGGTCGAGCCTATCCAGGTCTCTGGGTCCACGC
CGTCCTCCTCCACGACCGTGTCGGCCCCCACCGCCAGTGACATGGCGGGCTCCCCCGTCA
CTGCGTCGACCCACCCCGCCGGTGCCACGACGGGTTCCCCGGCACGCACTAGCTCTGCCG
CGACGAGGTCGACATCACCCTCCCTTGTCGCCGTTGGTTTTGCTCCCGCTCACGACTCGA
CGACTGGTTCCACCGACGAACCGGCCGCTCACGTGGGCTCGGCCGCCGGTCCGGCTCACC
GCATGACGACCCGCGCCCGGGCTGGCGTTCTTCGCCCAAGCATGCGCTACTCTTCCGACG
AGTATGCGTGTGTTGTGGCGACCTTGACGCCATCACCCATTCCCACATCCTTTCGCGCCG
CCATACGGGACCCTCACTGGCTGGTCGCGATGTAAGAGGAGTTCGACGCCTTGCAGCACA
ATCGTACGTGGCAGCTTGTGCCGCGACTCCCTCGTGCCAACGTCATCTCTGGCAAGTGGG
TGTTCCTCCACAAGACTCGCCCGGACGGCTCTCTCGAGCTCTACAAGGACCGGTGGGTAG
TTCGTGGTTTTTGGCAACGAGCTGGCGTGGACTTCACCGACACCTTCGCCCCGGTTGTGG
AACCGGGCACGATCCACACTGTGCTTTAGCTAGCGGTCTCGCGCACTTGGCTAATTCATC
AGTTGGATGTCTCCAACGCCTTTCTGCATGGTCATCTGGACGAGCGGGTCTTCTGCGAGC
AGCCCACACGTTTTGTCGACGCGGACCATCCCGACTCCGTGTGCTTGCTCTCTCGCTCTC
TGTACGGGCTTAAGCAGACACCACGGGCCTGGTACCAGCGTATCGTTGCCTTCCTGCAGT
CGTTGGGGTTTCGATCCACCCGCTCTGATGCCTCGCTCGGTGTGCTTCGTCAGGGCGCTC
TCACGGCCTACATGCTCCTCTACATTGACGACATCATCCTCACGGCTTCCAATGCCGAGC
TCCTTCAGCGGGTCACAACTCATCTTCGCGCTGAGTTCGCCCTGAAGGACTTGGGGCCGC
TCCATTACTTTCTCGGCATAGAGGTGGTCCGTCAGGCTGACGTCTTCTTTCTGCATCAGC
AGAAGTATGCTCACGAGGTTCTGGAGCGCGCCGGCATGCTCAACTGCAAGCCGACGCCCA
CTCCGGTCGACACCATGGCGAAGGTGTCCGCTATTGAGGGGTCTCTCGTCACCGATGCGA
CATTTTTATCGCTCCATCGTTGGTGCTCTACAGTACATGACGCTCACACGCTCGGGCCTG
CAGTATGATGTTCAGCAGGTGTGCCTCCACATGCAGTCACCACGAGATACTCACTGGACT
CTGGTACGGCGTATTCTTCGGTACATACGCGGCACCACATCTCTGGGTCTCACCTCCACC
GACCTCGTCGCGTACTCCGATGCCGACTGGGCTAGCTGCCCCGACACTCGCCGCCACACA
TCCGGCGAGCCCTCAAGAGGCGCTAATTTTCGCCTAAAAACGCTTGGGGTGGGGTGGGGG
GGAGGGGGGAGGCGAACGGCTCGATATGCCCTTATAAGTGGACCAATCTAATCCGACGAC
CGATCAAAATTTGGACCGGTCTATCCACGCGTACGACGCCCTATTTTGAAGCCAATAGCG
TTCAATTCATTTTATTGTGGAAGCTATAATATTGAAAGTGGCAATTTTGAAAAGCTAGAT
ATTCAAAGTGGGCAAATATCTGATTTTCCTTTTTTTTCTGCTCCCACTCTTGGTCTACTA
GCCGCCCCACTGCTGCCGTCGTACCGTACCTGAGGGCCGCCGCCGGCGCCTCCACCGCCC
GGGAACGCCCCCGCCTTCCCGCCTACCACGCGCGTCGACGCTGCCGTCCTCCTTCGTCGG
GACACCGCGTCCCTCTGCCGCCGCCGCCACGGCGCCCCCAGTGTGGGGCTCGAGGTATGA
CCTAGGTTTGTCCCCATCCAGCGATTCTCCTAGTCAAATCCCCACCGACCTTCCCGATTT
CCGGGCGCACGCCGGGCCGTCTAGATCCGCCCCCGACGCCGATGGAGGCGCCAATCGAGG
CCGACGGGAAGAGCTCAGAGCAGCTCCCAGGGAACGGCTCATTGCCGAAGATTGCCGAGA
AATCCCAGGTTAGCGAGTGCATTGGGTCATTCCAGGTGTCAAATTCTCATGTTTGCCTGC
TGACGGAGCGAATTTCTTTTGGCGCTTTGCTATTTTTGGCCAGGATTTGGGAGGTAATCC
AGGTATGGAACTGCCGCCGTTGCATCAGGGCAAAGAGGTCATCCTCGTGGAGGACAATGA
CAGTGGCCAGGAAGATGGTGGGAGTGCCAAGGTAGACGAGAATGCACCCCGCATCGGGTT
GAGGTTCAAGACCTATGACGACGCGCTCAAGTACTACAAGCAGTATGCGGTGGATTCTGG
CTTCTCGGCGATCACTCTCAAGTCGTCGTACCTGAAGTCGGGGGTGTGCCGGAGGCTGGT
GCTCGGGTGCAGCCGGTCTGGGAGAGGGAGAGCAAACGCGTGCTATCTGTCTAGAGAAAC
AGCAAAGATAAACTGCCCTGCCAGGATCTCATTGAAGTTAAGGCAGGACAGGTGGCTTCA
CATTGACGACACCAAGCTCGATCACAACCATCCGCTCAACCAGTCCTCAGACTCGCCCAT
GAGCTGTTACAAGAAACTGACGGATGCCAAGAGTGTGGAAAACGCTTCACGGCTGAAAGG
GCGCAGGAATGTTCCGATAGCTGACAAAGAGCAGGGGAAGTTCACTGAGATTGGAAGGCT
TAAGTTTGGGGAAGGAGATGATGAGCAAATCCAGAAGTTTTTTGGGAGCATGCAGAATAA
GAATCCAAATTTCTTCTACCTGGTGGATTTGGACAAACAGGGGCGTCTAAGGAACTTGTT
TTGGAGTGATGCTAGGTCACAGGCAGCACATGAATACTTTGGTCATGATGTTGTTTACTT
TGACACTTCATACCTGACTGAGAAATATGATCTGCCACTTGTTTTCTTCACTGGGATGAA
TAATCATGGCCACCCTGTTTTGTTTGGTACTGGCTTGCTTTCGGATCTAAGTGCTGAGAG
CTATACCTGGCTATTCAGAGCATTTTTGGCATGTATGAAGGGTTGTTACCCAGACGCAAT
CATCACCGAGCACTACAATGCTATTCTAGATGCGGTTAGAGAAGTATTTTCCCAAGTTAA
ACACCGCCTGTGTCTGTATCGCATTATGAGAGACGTGGCCGAGAACTTGAAAGTACACGC
GGAATTCAAAACGATTAAGAGAGCACTGAAGAAAGTAACATATGGGTCTTTGAAGGACTC
GGAGTTTGAGGCTGATTGGAAGAAGATTATTGAGGAACATGGACTTGCAGGAAATGAATG
CCTCAGTTCCCTACATGAGCATCGGCGATTATGGGCACCTGCTTATCTTAAAGACAAATT
CTGGGCAGGTATGTCAGTTTCGCAGCGTGGGGAGTCTGTTGCTTCATACTATGATGGATT
TGTGTACCCAAAAACTTCTCTGAAGCAATTTTTCAGCAAATATGAGATGATATTGGAGAA
CAAATATAAGAAAGAGTTGCAAGCGGATGAAGAATCTTCCCATAGGACTCCATTGACTGT
AACAAAGTTCTACATGGAAGAGCAACTGGCCAAAGCCTACACAATCAACATGTTCAGGAA
ATTTCAGGAAGAGTTGAAAGCAACAATGTATTGTGATGGTATGCCAAGTAAAGTTGATGG
CCAGTTTGTTACTTTTGAAGTGAAAGAATGCTCATACATGGAAGATGGAAAGGAGACGGA
GAGCAGGATTTATGAAGTTTATTTTTGTAAAGAAGGGCTCATTGTTGAGTGTGAATGTGG
TTTCTTTCAGTTCACTGGCATACTATGCAGACATGCGTTGTCTGTGTTTAAGTTGCATGA
CATGTTTGAGATCCCGTCAAGATACGTCCTTGATCGCTGGAAAAGAGACTACAAGAAACT
GCATGCTTTGGCACATTATCCCAATGAGATGCTCCTTGGTGACACAGTGGAGCGCCATGA
TTATTTGTCTACACAGTGCCGTCAGGTTCTCAATTTAGGCTTTATATCTGAGAGCAGGTA
CCTTGTTGCTCTGAAGTTACTGAGAGAAGCAGAAAGGACTCTTCTCTATGATGGTCAACC
TGCTAGAGACAGGCAGCCAAGGCTTCTCTCGTTCGAAGCTGATGCACCTGAAAATGGCCA
AGGCCTTTTTAGTTCTCAATTTCCAGAGGGAGCGAAGAATTCCCTGTCCACGAATGCAAA
GAGTCCTTGTCTGCCAGCAAAGAAAGTGGTAGAAACTAATCCGGATGCTGTATTACGGTC
AAATAAAGAACAGGTTCGTCTCTTCTCAATATCTGGGCGTAAAGAGCCTCAGGCAGTCAT
ACGTCAGTTTTGCCGTACGACTACACCTTTATTGATTTATTTATGTTCTTAGCAGGATTT
TCTACGGTCATCATTTGTGCCAACTGAAACTAATATGATTCAAGGGACACCGTCGGCTTC
CCATCTTGAAAGTCCTGACATGGGAGTGCAAGGAAGCATTCATCTAATGGTATGCACTCT
AGTACTTTTGGTCTGCTTCTGCCACTATCATTTTCATGTATGTGAACATTTCTGTTGCGA
ACTTAATCAGGAAGGGATATCTCCAAACCTGACATTTGGACCTCATTTTGGAATGGATGT
TAGTCACCAACATGAACTGCCTAATCAACCAAGGATGATGCCGAACAACTTTATGCAGGT
TTTTGCTATGCACAGATCTTCATAATATTCTATGAACAACCGTGCTGATTTATAATATTC
TATGACCTGACATTTGGACCTCATTTTGGAATGGATGTTAGTCACCAACATGAAATGCCT
AATCAACCAAGGATGATGCCGAACAACATATTCCTCTTTGTTTTCAACCTTTTAGTTACT
ATAAACAACCATGCTGATTTATATGTTAACCATCTTCTCCTTGTGCATTTCCGACTAGTG
GGATCAATGCCTTTCTGTTTAAAACGTTTCAGGTACAAGCAGATCCCCATGTTTTCGGAA
ATCAGTGGGCTTACAACCCAACGATGCAGGTCTGTCCGCACACAAATGACTGTCCCTTTT
TTCTTGCAACCTTGAAACTTATTAGCCTATGTTTTAAGATGCATGCTAGTTCACATTTTC
TTCTTCATGGTCCATGCTTATTGCCTCTGTTCTGATTTGCAACCTCGTCCTTTGGTCCCA
CTCTTCCAGGGATTCCATGCTTATGCAAATGCACATGAGATAAGATATTTAATGTGGTCC
CACTCTTTGAGGGATTCTATTGCTCGACGTTTTCGAGCCTCATATGTTATGATTTCCAAC
ATATGCATACGACTATTAATCTCTGTAGCTTATCAAATGTTATTACTGTACACATTGAAC
ACCTAAAAAACTACTGTCCTCCCCGTTTTACCATTTTAGCATTTAAAGCTACTAGTGTAT
AATAAAATGACTGGTGTGACTATATTGCAGGATAATCCAATGCTAAGAACTCCTACTCGA
AGAGCAGAGTAGATTATGTTCATTGCTCTAAAATGTGGCAGTAGAATTTTAGGTATGCTG
TCTGTTTCTCCAAATCACCATCCATATATTCTCTTGGTACTGCAGTGTCTTGTGGTAGAC
ACTAAGGTACATGAAGTTCATTGCATTCCCCCTGTATAAGGACCTTGATTCTTGATTTTT
GTTTCTGGCTTGGGATTGACAGGGTGGCGACTTCTGATGTCTGGATCCCACACACAATGG
ATGTGAAGTGGAGGTAGATATGCTTAGAGTTTGTGCATCTTCAACTTAGGGTAACAAACT
TTACATATTTGAGGACACAAGTTCTCCAGGCATAAATCTTGGAATAGCAGCAGGAATTTT
TTCCGAGAATTGACGTGGCAAATTTAGGAAGTACTCCCTCCTTCCAGAATTAGTTGACTC
AGATTTGTCTAGATTCGACATGTTTTAGTGTTAGATACATCCGTATCTAAACAAATCTAA
GACAACTAATTTGGGACGAAGGTAATTCTACAGAATACACAGATGCTGGTTAGAAAAAAG
GAGTATGCAGATGCTAGCATACAACAAACCTCTTTTTTCTTGGCACCCCGCTCCAGTAGT
CCAGTTCTTACCCTCCGCGTTTGTCACTACTCCATCTTTCTTCTCAAGGGTTGTTCAATA
CACTTCGATTTGGTTCTCATTTGGTACTTGGCCTCTGGATCTGTATTTTTTTTTTCCCTT
GGTCATGATCGAGCATGGTTGTGGTTTCCTTCGATATTGACGTGCCTGTGGATTTCAGTG
TTTTTGGTTTTCAGACTAAAGGATCAAAACATTCACTTGCATTCAATCGAAAATCCAACC
ACATGATTCAATTATTTGAGTTTTTAAAAAAATATCTGAACTTGTGTGTACCACCGTAAT
GGCTGAAATATTTTGATTGGAATACAGCTATTTCGGTATCTACTGAAATTTCATTGAAAG
TGATCCTTATTCATGTGAATGTGCAATTTTGGAACCATTCTTCATTTTGTGCTTTTTGTT
TTTGAGTGGTGAATCATAAGGCTTATGGGAATGATGGACATGATGAATATGGGCTGATGG
CCAGTGGCGTGGCTCCGCTAGCTAAGGAGAGAGGAATGTCCCCGTGTGCATCAAGCTCTG
GCTTTGCACAAGATCCATCCAACTGGGCTGGCCCATTTGCAGTTCAAATAAAAAAACATA
ATGCTAAACCACTGTAGCTGGACGGTACTGTACCAACGCTTTACATTGGCACCACGGTTA
TTTTTCTCTTTTTTATTTTCGAATATTTTGAACATATGAATATATACGCTCAAAAAATAC
ACATTGAACATTTTTTAGTGAATGTTGAACAATTTTCATTTATGCATTGAACATAACGTA
TGTTGAACAATTTTCAGATACGCATTTAACATGTGTAATCTACATTGAACAATTTTGAAT
ATGCATTATAATTAGACATTTGTGTAATATATGCTGATAAAAATTAAATACACAGTGAAC
ATTTGTAGTATTTGTTGAACAAATTCTTAATATATGATGAATATTTTATAATGCATGGTG
TACCTTTTTGAACATTTTATTGGTATACGATGACCGGTTGTAAGAGACAATAATTTGAAT
AAATTAAAAAGAAGCGCATCTAAGCGTTTCGCAAGCATGATAGCATAGTACATGCATAAT
AATAATAGAATGACAATTAAGGATTCAACTGTCATCTTATAAATAATATCAGAGTTTACA
TCACGCATTCAAACAAGGTAGTTCCGCTACGGACTAAATAACATGAGAAAAGGCTATGCT