morexGenes - Barley RNA-seq Database

Contig contig_8882

Source Contig contig_8882

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_8882 (2746 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_8882

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_80130	5	1095 bp	AK371457	Available	Available	None

CDS Structure of MLOC_80130

Contig Sequence (2746 bp)

>contig_8882 2746 assembly3_WGSMorex_rbca.fasta
GCTGGTTGCTGATATCATTGTGTTTTGTGTTTGCTGGGATGCAGCTGCTTTGACTGAAGA
AAACAATCAGCTGAAGGTACTTAACCGAAACAAAGTTGCGTTACCCACAAGCACGCAGTG
AAACTTGTCCATCTCGTTAAATGGTGTTCTGTGTCTGCTCCTTTTTTCTTTAGATAAAAT
TGAAGGAAGCTGAAAGTTGTGCCGAGCTCAGCGAGCCGAGCACAGACCCCGAGCGCAGTG
GAAGAGATTTGAAATCAGAGTTAAGGAAGCTAAAGAAAGCCTATAAGGCCCTGAGCTCAC
AGAAGGAGACTGAGGTTTCCGCGTTACTTGCAGAAAAGGATTTTGTGTGGAATCAGTTCA
AGATGATGGAGAAGGACTACAAAGCGCTCGTTAAGAAGATGGACAAGGAGGCAGCACAGG
CTACTGAAGCAGCAGAAAAGCTTCAGCAGAAGCTGGAGGAGCTGCAACTGCAAGTGGTGG
CCCAAAAGAAGGATGATGATATTGGCAGATTGCAGGCTGAAGCTAATGATGCCAAAATGA
AGATGCTGGCTCTCGAGGATAAGCTACATAAAATGCACTCCCTGGTCAGTGAGAAAGATG
ATGAAATCCAAAAACTCAAGAGTGGGCACCTTCAGGCTAGTCAAAAGCAGAAGGATATCA
ACGGGGCACGAAGAAAATGTAGGTCTGAAGGTCCATCTGTACGGGGCAAGTCTAAAGGTA
ATCCTCGGAGGCAAATAGTAGAAGAGGATCAACCAGAGACCAGTCAGAAGCGTCAGTGTC
CCTCTTCGTTATCTGTACGGGGCAAGTCTAAAGGTAATCCTCGGAGGCAAATAGTAGAAG
AGGATCAACCAGAGACCAGTCAGAAGCGTCAGTGTCCCTCTTCGTTATCAAGTGTAAGTA
CTCCATTCCCAAGTATATCATCCGTGTACTGAGCTACTGACATGCTCCGCTGATAACCTA
GATGCTAAGTTCCTGTTATAGAAAAATTTAACTTTTCCTGTGACTGTAATGTCTAATTTC
TTGGCAGGCTGCATGAGTTGCATTTTTCTGTACATATGGACAAAGAGTAATGTTGATGTA
ATTTTAGTGATTATTATTTGAGTTGCAAGTGCTCATAAAGTAAAAGTAGCATCACACGTA
CTGAATTACATTCTTAAAAAACTCAGAACCAGGCAAAATACGGCTCTGACTTACCAGTTT
ATCGCTTTCCAGCTAATGGGTAACATTCTACTGCTAGTTTGTTCATCTATATGTGTAAAC
AAACCTAACCTGCAGAGAGGAGATATTATGCATCTTATTGCATTTGAAACCCCCTCCTTC
ATCAGCTACAATATCTTAATTCTTTGTATGTCGCATGAGTTGCGATCAGCTGTTGTTCAT
AAATAGTAAAATCTACAATTTACTTGTGTCAGTAGCAACTTTTCACAAATAATTGTAATG
TCCAATTCTTGGCAAGCCGCCTCAGCTGTGTCTTGCTGTAAATATGGACAAAGAGTTAGC
TTGATGGATTTTAGGTGAGCATTATGTTCCTTGCTAGGTGCTCATGAAGGACCATCACAG
ATAAATTCTAGGAGAATAACAAGGACATGGCCAAATATGTTCCTTGCTTTTAACCATGTC
ACTTTCAACATTTGGTTTGTTCATCTATATGCAGAAGCAAGACCTACCCTGCAGAGTAGA
ATAACATATCACTCTTGACACTAACCATGTGCTCATCTATGTCCTAATTCTTGGGGGCCG
CATGAGTTGCGTCCTGCTGTAAATATGGACACATAATAAGGTTGATGGAATTTAGGTGAG
CATCACTGAGTCATAGATGCTCATAAAGGACCATCGCATATACACTTGGGAGACAGATTA
ATAGCAAGGACACGGCACTGTAAACCTTTTTGCTCATCTATGTCCTAATTCTTGGTAGGC
TGCATAAGTCGCATCCTGCTGTAAATATGGACAAATAATAATGTTGATGGAATTTAGATG
AGCATCATGTGAGTTGTAGATGCTCATAAAGGACCACCGCAAATACACTTGTCGAGACTA
CTAGTAGGACATGACTCATCTATGTCCTAATTCTTGGCAGGCAGCAAAGGTTGCATCCTG
CTGTAAAATATGGACAAATAATAATGCTGATGGAATTTAGGTGAGCATCATGTGAGTCGT
AGGTGCTCATAAAGGACCATCATAGATACACTTGTGATACCAGTAGTAGGACGGCAACAT
ATGCTGTTTCCAATGTCAGTATCTCATCTGAACTATTTCTACACCTGAGGTGTCTAGTTT
TTTTTGTCAGCGTGCATAGTCCAAAATTACACGACAATGAGGGTCCCGATCATCTTTGCC
TGTGTCGCTTTTGAATTTTTTGCCTCACATATTGTGATGTCCTAATTCTTGCTGTGCTGA
CAGAACGCCATTGGTGCATGCAGGGAGTGGCGCTCGGCGGCCGCCCATTGCATAAGACGC
ACCGGAAACCCGTGCCGTCTGCGTCCCAGCAGCACGTACTCTTCTCCGCCAATTTTAAGG
TCCCAAAGCTGAAGGCCCCGCCCCTCCTCCTTCGTAGTAGTCTGATCTAATTGCATTCTG
ACATGTGCAGCTGCTGTTAGACCTCTGCGATGCCCAGGGATGAAGCCAACATGCAAGCAT
AGGGGGGGGCAAGTTTGTTCATGGAGGAGGCAAAGTTCATATGAAGTAAAAAAAAATAGC
TATAACAACCATTGTTATATTAGAAAAATAAATTTGTTAGGGGGGG