Map Locations of contig_88787 (8735 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_88787

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_80127 2 3619 bp MLOC_80127.2 Available Available LOC_Os02g34540.1, FRAME:-1, EVALUE:3e-115, 13102.m03741 protein tetratricopeptide repeat containing protein, putative, expressed





CDS Structure of MLOC_80127






Contig Sequence (8735 bp)

>contig_88787 8735 assembly3_WGSMorex_rbca.fasta
ATCCGTATATAGTCCATAGTGTAATCTNNNNNNNNNNNNNNNNNNAGGAACGGAGGGAGT
ATTTCTTTACTAAGGGAGTATGAATCAAACACACCAAGATCCCCAAGCTCCAAAGGACAG
CAAACAGCCGACCAGTTCAGTTAACTAGGGAGTGGCCACCTCCTCACCTCTCCTGTAATA
ATTTCTTGACTAACTTTTGTATCATGTTGGTGCACAGGACATGTAAAATTGGTATCTTCT
TGAGCTAATCTGGTTGCTGACGCCTTAGCCAAAGAAGCATACAAAAGTAGAAGTTCGTGT
GTGTGGGATAATGACCCGCCTGGTTTTATTCCATCCTTAATTGTAAATGACCTTTCTATC
TTGAATGAAATCTAACGCTGTAAAAAAAATGGTATCTTCTTGATACTAATGCATTCTCTT
CATAAAGAAAACGTTAGCTAGGTTGGGCACACCGCCTCTTCAGCCGTGCATTATGCATCT
ACCTGCATCCTTGGCAGCGACGCCATGTCAATGACCTGGAGTGTCATGTGCAAACCCACA
ACACTATGGAAATCTAAGAACCCAATATTCGATAGAAGAAAACCTTTTCTAATCCTGGGA
AATAAGGTCCCTTTGATTCGCAGGATTACAAAAACGTTCTTTTCTATTACCACGTTTTGA
GAAACCTGCGAACCAAAAAACCTTGGAAGTTCGAGAAAAGCACAATATATGGCAGAGAAG
GACCGCGTGTACAAGCGGAGCGTGGGAGAAATGTGTAGATGCATTCAACTGAAGCTGCTT
CCTTCCCCATGGAAAAATACCAGCACCAACGCAAAGCATAGGGATACTTGAGCAACTGCA
GTATCGCGTCTCAATCCGCCAATTTCCTTTCATCATCCCGATCCGTGATTACCAGGATCA
TAAGACAGTTGCATTCAGCCACCCGCTAGACAGGACCCTCCAGCAACACATTTCGACATT
CAGACACCCGCTGGACAAGACTAACAATAACAATGTGCAAGGCTCTTGAAACCTCAAGAT
AGTCATCTGGTGTCTTCACCATCAAAGCGTCATGTCTTGGAACAAGTTTGACAGTTGACA
CTAACAATACTTGGACTGACAGTCAGAATACTGAGAGCTCTACTATGGAAAATAAGTTCA
AGTAATTTACTGTTAAAGATAGCAAAGGATTTGAGGTGATTAACACCTTTGTGAATGGAT
GCTAGTGCAACCACAATAATTTATTTACTGTTTTGAATACCTAGCTCCTCCAACATTATG
TATGGTGGTCTTTATGTACTTCCCCGTGCTTGAAAAAAGGCGTACAAAATTGTCTGAAGT
CAAATTGTGCAAAATTTGACCAAGTTTGTACGGAAAATTTTGCCTTCTTTTCATGTATGG
GTAGAGTACGTTTTTCCTTCATGGCAGTATTAAAGACAGGCATGGAATGGAAATCTTAAG
TTTTAACTATTACAATACCTACACAGTTCAAGGTACTAAGAGAATAAGAGATCATTTTAT
AATAGGAAAAAAACTGCTATAATTCTCACTATAATATGTGTACCATACTGGATCAAACTG
CAAATTCAAAACCATGCCCACCCCAGATATTTAAGTAACACATACTCTAGTACCCATGGA
CCTCTTAATAATAATCATAAGTTAAAACAAGCACAATGTATTCCGTACTACATATTCGAT
GCCATTATATTGCAAGGGTGGGAGGTAAATTTGCTTGCCCCAGAGGAAAGAATATCTATA
TTTCACAAGCCCATGATATTCTATTGGCGACAACACATATAAACTGCTATGCAGGCTTTA
ATTAAGATAATCACACACAAAATCATCATGACACGGATACTATTATTAACTGAGGCATGG
AATGAAATCTGAGGTTTTATTGATAACAAAAACCTACATAACTCAAGGTACCAAGAGATA
ATGTTCCAATATGCAAAAGAAACTGACATAATTATCTCTATAATATGTGTTACCATGCTT
AATGAAACTGCAAATGTAAATTATATCCAGATATTAAGTTAAATAAACCCATGATACTTT
TAATACTACTTATTGGTTAAAACAAGTACACTATAATCCATCCCCATATTCCCCGCCATT
GCATTTTTTGGGGGTGGAGGGTGAAATCGCTAGCTCCAGAATTAGGGAGAATATGCATCT
TGGCCACAACATTTGTATCACATAGCTGCCATTATACAGGCTTTAATTAAGACATTCTTT
ACCTTTTGCATTAATCAGAGAAGGAATTATCATGGTGCAGCGGTAAAACATTTCATAAGT
ACAATGTTGAATTGCTTTCAGTAAGGATAACAGCAGGAACAAACTTATCGATGGATGATA
AATGCTAGAAACAAAATGCTAGAAATTCCCCATGTTTGTTAACCACATAGTACCTTCCAG
TTGAGCAAGTCACTGCAACCACATAACTTTCAGTTAACATTAAATGATAAATGCCATGGA
AACATGAGCAATCAAATCTTAGTGTGTGGAGCAACTATAGCAACACAAATACACAATCTC
TCTGCTAGAGCACATCCTAGCAGCAGGTGAAATAATTCAATGCTGAAATCCAGTACCTCC
TACATGCGTGTGCAGGACTTGTCGAAGTCATCTGGTGCCACCCTGGTGATCCAATCGGCA
AGGGTTCGCTTGACCTCACCATGGTTGACGAAGGCAAGCTCGTACATGCTACACAAGTTG
ACCACCACTGTCTCGTTGAGGGCCGCCGTGGGCATCGTCTCCAGGGCGCCCTCGAGCACC
TTGATGGCATCGCCGAGGTCCCGCGAGTACATGAGGCATAGCGCCTTGTTGTTCAAGGCG
ATGGCGTCAGAAGGGTCAGCCTCAATGCAGCGCTCGTACTCCCGCACCGCTGCGGCATAG
TCCTTAGCCACGATGCACTCGAGCGCGCGGTTGCGAGACAGGAGATTGTCGTGAGAGGAG
TCGCCGGCCACAACGGATTCAACGTGTTGGAAGACCGCCGAGGCGGCAGCGAGGTTGCCG
ATCTGGAGGTGGGCATAGGCGAGGCGGGAGAGCAGGACCGGGTTGTCCGGCTCACGGGCG
ACGAGTTCAGCGACGAGGGCAAGGGCAACGTCGAACTCGCGGTGGGCGAGGTGATCGGAT
GCGAGGATGGACGCGACAAGGGCGTCACGACGGCGCCACTCGGGATGCTGGGCGTCCGGG
CGGGCCCGGACCGATGAGAGGAGCGTGTAGAGGCGGTCGAGAGCGAGGGGGCGGTCGGGG
AAGAAGAGCGGGAGGAGAGCGTGCAGGAGGCGGAGAAGAAAAGGCGGCGGCGGGCAGCCG
GGATCTGGGTGAAGTGAGGCAAGTAGGGCCGCGCCTTCGGGGAAGCGGCGGAGCTTGGCG
AGGGAGAGCGCCGAGAGCGCAGATAAGAGGAGGCGGTGGTGCGGGTGATGGGCGTGGGAG
GGGTGGGCGAGGTGCGCGAGCAGCGCTTGCCACTGTCCACGTGTGGCTAGATCATAGGGA
ACGGAGAGATCGGGCAACGCGGCGGCAGCGGCAGAGGTCGCCGGAGGTGAGGCCAGGGCG
GGAGTGGCAGACATGGTGGGATCGAGATCTCGGGAGGGAAGCGCAGGAGGAAGACGCCAA
GGATTTCCTCAATTCTTTCTTTCTTCCTAAAAGAACGAAGGATTTATTTTCCTTTGAGCA
TGGTGTGTTTGGTAGCAAAATGCAAAAAGTTGACCAAAATCAAAACTAATTGTCCGCAAA
TTTTTTTCACCCAACTCACCCTTTTTTGTGATGCCTTTGTCTTAGACGCCACACTACGCT
GTGTGACATCCGATACTATGTTGTGTGACGCCCGAGACGTAGTGTGACGCCTAAAGCATG
GGCGCGGCGCCACATAGTGTAGTGTGACACCTGACTGTTGGACGCCATACAAAAGGGTTA
GATGAATGAAATTTTTCAAACATGGCTCAGTTTATGAAATATTTTTGCTCCTCGGTCAAA
TTTGTCAAATTTGTCGTGCTTGGTTGAGGTCATCAAGTGGAATGTAACAGGTCGGTTCCA
TTTCCATTCCCAGAGTTCATTCCAGTGTTTGGTTTGCCTAAGGAACAGAAATCAACCCAT
TTTAGAGACTCATGTATTTCGTGTTTATACTAAATCAGACGGCACCTTCTAATCGAGCGA
ACAACACGGAACGGCCCGCTCGACTCTCGCTCACCTTTTCTTCCGAGGCGTCGTCTCCCC
TCCCCAACAGGCATCTCAAACCGCCACCGACAAATTTTCTCCCCAAGGGGAGATAACCCG
CGCGCACGGATGCGGGAAGACGTCGTCTAATCATAGATGCATACATTTTAACAATAATTT
AAACCAATCGAATGAAATTCGTGCAAATCAAACGAATTTTGATATAAACACGACATATTT
CACTTGAAATAGGATAATTTGTACATACACATGATACTTCGTCCGATGAACTAAATACAT
TAAACTAAAATCCTAAACTACCCTATACTTGATGGTGACCTCGTACCCATGTTGGGCTGG
CCGGTGGCTCTTCCTCCGTCGTCGTCGCCCGCTCCATCGTCAGAGTCATCGTTGGGCTTC
GGGTGACGGAAGGTGGCGGTGTCGCGACAGGGCTTCCAGGCAGCCTCTTGCCGCTCGCGG
ATGATCCTCTGTGCCTCCCCGTGCGACGTGTGCAGGGCGGTCGCGACCACCGAAGACGTG
GGCGAGGGGGGAGGCCGACAGACCTTGGAGGAGGCGGCATTGGCGGGAGCGATCTCGATG
CGAGACCGCTCCTTGCGGTATTTCAACATATCCCCGTCGACCTTGTAGGAGACAGTGCTT
GCTCGTCTCTCCCGTCGTCACTGGGCGGTTCAAAGCCCACACGTACCTAAAAAAAATCAC
AAAAATTAGAGAATATAATAGTCATACATCTGTGAAATGTAGCAGGTGCATTGTATAAAT
GAAAATGCATACATCTATAAGCATAAGTTCCAAATTGACAAGTAAAGACGGTTTTCTCTT
GATCTTCTTTTGTTACAGGTATTTGAGAAAAAACATAATAACCATATGGAAAAATAAAGT
GCGTATGCTTAGATATCTCTCATTTGGTCAATAAAGGCAAGGGATAATGATATTTTCCAG
TAGCTTTAATTACCATCTTATAACGAGTTATGATTCTTTGAGGGATAAGTTCATTTTTAT
CATTAGGAACAACAGTAATGCCTCATTTCTTAGGGACACAATGAACACGACTTACACATC
TACTATCAGCGATAAATTATATCGGCCTCCAGAAGCTTTAGTATTTCATTTCTTACTCCA
TCCTTCATCTTAGGATCCAGACGACGTTGATGATCAACGACTGGTTTAGCATGTGCTTCC
ATATTAATCTTGTGTTGGCATAGAGTGAAACTAATGCCCTTATCGAGAGTATATTCAATG
GAAGCACGGTGCTTCTTCATAATTTTAAGCAATCTATTTTCTTCATGCTCTCAAAGGTTA
TCAGTAATAATAACAAGATATATCTTCTTGTCACCAAGATAAGCATATTTCAATGTATTA
GGTAGCTTCTTTAATTCAAACACAGGATCACTCTTAGCAGGGAGAGGGTCTCCCAAAGTT
TGAACATGCAAATTATGTAAGGATAGGTGCTTGATTAAAGAGTATATCATCTATTTCCTT
TCTTTCATTCATATGCATATCATTTTTATGGTCTAGAAAATATTATTCTAATGGATCAGC
AGGAGGCATAACAATAGAAGTAAGACCAATAATTTCATTTTACTAGGCAATTATTTATCA
TGTGATTGTCTACTAAACTCGGAAAATTGAATTCATGAGATATATCATCAAAGTTAACAC
TAAAGATTTCCCTATTGCAATTAATTTTAGCATTAAAAGTATTCGTGAAAGGTCTACCAA
AAATACCGGGACAAAAATTATCTTGTAATGATCCAAGAACTAGGAAATAAGAAGGGTATT
TGATCTTACCACACAAGACTTCAACATCTCTAACAATCCCAAGCGATCAAATAATCTCTC
TGTTTACAAGATTAATAGTAGCATCGATATCTTCTAACTCGAGAGGTGCAATATCATGCA
CAATTTATTGATAAAGAGTAAAGGGAATTCCACTAACAGTAGCATCCATATCACATAAAC
CATGATAAGAACGATCTCCAATCTTAACAGCAAAAACAGGCATGCCAACAACAGATTTAT
GTTTATCATTAGGATCATGTTTAGCAATACGAGATGGTTCATCACATAATATATAACTGA
TGGGGAACGTTTCATGGGAAACAAAAAAAAATCCTACGCACATGCAAGATCTATCCATGG
ATATGCATAGCTACGAGAGAGAGATTGTGTCTACTTACCCTTCTAGACCTTAAGCGGAAG
CATTTAAAACGTGGTTGATGTAGTCGTACGTCTTCACGGTCCAATTGCGATCCGTCCCGG
TCAAGCGCCGAACGAACAACACATCCGAGTTTAGCACACATGCAGCTCGACGATATCTCC
GCCTCCTTGATCCAGCTAGCGAAGGCGTAGTAGTAGATGGGTTCTCCGGCAGCACAACAA
CATGGTGGAGGTGGTGGTGGAGCTAGTCCAGCACGGCTTCGCGAAGCACTACTAGAACAA
GAATGGAGGAGGAACAGAAGAGAGAGGGACGCCAAGGTATGTTGTTCTAGGTGCGCCCCC
TCTCCTCTATATACAGGTGGATGGGAGGGAGGCCATTCCCCTTAGGATTTCCCTAAGGAT
GGGGTGGCGCCCCAAGGGGGCTGCCTTGGCCCCCAACGCAAGGGGGGCGACCACCCTAGG
GAAACCCTAAGCCCTAGCTGCATGGGCCTTTGTGGAGGGTGGTGCGCAGCCCATGAGGGC
CTGGTGCGCCTCCTATATGAGCCCATGAGGCCCTCCAGGTCAGGTGCCCCTCCCCCCGGC
AGACCTTCGGAATACTTCCCGCATTTGCGACAAAACCCCGCTAAAACCCCAAACCTTTCT
GGAAACCGAATACCAACTTTCCATATATAAAACCTTACCTCCGGACCATTCCGGAGCTCC
TCGTCATGTCCGAGATCTCATCCAGGACTCCGAACAACATACGATCACCAACATACATAA
TCCAATAATACTATGTTGTCATCAAACATTAAGCGTGCGGACCCTACTGGTTCGAGAATC
ATGTATACATGACTAAGACACCTCTCTGATCAATAACCAATANNNNNACCTGGATGCCCA
TATTGGTTCTTACGTATTCCATGAAGATCTTTATCGGTCGAACCACAATGCCAAGGATTC
AATCAATCATGTATGGAGTTCCCTCTGTCTATCGGTATGTTACTTGTCGAGATTCGGTGG
TCGATATCTCCATACCTAGTTCAANNNNNNNNNNNNNNNNNNNCTTTACTCGTTCCATAA
TATAAAATCCCGTGACTAACTCCTTAGTCACATTGCTTGCGAGCTTCTTGTGATGTTGTA
GTATCGAGAGGGCCCAGAGATACCTCTNNNNNNNNNNNNNNNNCAAATCCGAGTCTCGAT
TCATGCCAAACCAAGAGACACCCTCTGAGATACCTGTAGAGCACCTTTATGATCACCTAG
TTACAAAGTGATGTTTGATCCACACAGTGCATTCCTACTGTGCTAGGGAGTTGCATGATC
TCATGNNNNNNNNAACACATACTTGACATGAAGAAAGTTGTCGCAACAAAACTAAGTGAT
GTGATTAAATGTTATGCTTCGGTTGGGTCTTGTCCATTACATCATTCTCCTAATGATGTA
ATCCCATTATCAAGTCCATTACATCATTCTCCTAATGATGTAATCCCGTTATCAAATGAT
AACTCATATCTATGGTTAGGAAACCTTNNCCATCTTTGACCAACGAGCTAGTCGAGTAGA
GGCTCACTAGGGACACGATGTGGTTTATATATCCACACTTGTATTTAAGTTTCCGGGTAA
TATAGTTATATCATGGATAATACACAATTATCATGAACAAGGAAATATTATAATAACCAC
TTTATTATTGCCTCTAGGGCACATTTTCAACAGTCTCGCACTTGCACTAGAGTCAATAAT
CTAGCTTTATATTGTAATGAATCTAACACCCACGGAGTTTTGGAGTTGATCATGTTTTGC
TCGTGAGAGAGGTTTAGTCAATGGCGCTTTATATGTGTGGTCTTCTTGTGAAACCTCAGA
TCCTTGGCTAGAGCAATAGCGTGAGTGTTGTCATAAATGAGAGTCATTGGATCCGATGCA
CTCGGCACAACTCCAAGATACATCATGAACTGCTTCATCGAGACTCCTTCTTGTGTTGCT
CCCGAAGGAGCTATAGATTCCTCCTCACATGTAGATGCTACTACCACACTTTTCTTTGAG
CTAAACCAGCCAAACACTTCACCATTAAGAATAAATACATATCCNNNTTGAGACTTAGAG
TCATCTGGATCAATGTCAAAGCTAGCGTCAACGTAACCTTTAAGACAAGCTCTTGACCAC
CTCCATAAACGAGAAACGTCTCCTTAGTCCTCTTCTGGTGCTTAATGATATTTCTTACCG
TTGTCCAGTGCTCCACTCACTTTGAAACCTTCCGGCCATGTTTATGTCAAGGCTCACATA
TGGTCTTCTGCATAACATTGCATACATGATAGAGCCTATGGCTAAGGCATAGGGGACGAC
TCTCATCTTTTCTCTATATTCTGTAGTTACTCAACTTCACACCTTGCAAGACAGACAAGA
ACCCTTTCTTGGACTGGTCCATCTTGAACTTCTTC