Map Locations of contig_88201 (5686 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_88201

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_80022 1 223 bp MLOC_80022.1 Available Available None





CDS Structure of MLOC_80022






Contig Sequence (5686 bp)

>contig_88201 5686 assembly3_WGSMorex_rbca.fasta
GGGGGCACCGGAGGAGGGACGTGCGGTACCTGCTCGGGCTAGCCTCCGTCCATGGACGCG
GCGGCGGAGGAGGGACGTCAGCGGCGGATCGAGTGAGACTGTGAGAGCGGCGGCGGGGGA
GGGACGTCAGCGGCCGATCGAGTGAGACTGTGAGAGCAGTTTTTTTCGTTTTCGGTTTGG
ATTTTGCCCACGTCCGGCGTCCGCCCCCACCAAATCGTGGGCAGCCAAAAATTTGTTCAC
CCGTGCGCGGTTTCTCACCTAATAAAAAATATTTGCTGCACATGAATTCTTACAGTATCA
TCAAAAACCAAAATCAACATATGAATCCGCCCCGGGTGTGGCGGTTAGGGTGCTTCAAAG
ATCACGGAGGCGATCACGGTTCTGGTGCGGGCTCGTCCTGGTGAGGCCGGCGTGGGGATC
TCCGATCTTCGACGCCGAGTTCGCCATTCACGTCCCATTGAGAGTCGATCCCATCCACCT
CATAGCCTTCTGTGTGCCTGGGGTCGCACGGTTGTAGACCACCATAAACCCTAATTCTGG
CCGGACCAGCGAGGAGCGGGGGGTGATGGAGGCGGTTGATGGGATGATGCGGGGGCTGCG
GTTGACGGAGGAAGAACGACGAGGAGTCAAGATCAAGGTGCCGGTGAAGGAGCGGGGGAA
GACCCTAGTGGCGCAGGCGGTAGGGAAGGTCCCGTCGGAGAAGCTGGCTCACCCCGATGT
GATCCGGCTGTCCTTGGGGCGAGTGTGGTGTCTGATCAAAGGGATCGAATGCAAGGAGGT
GGGTGAGAATCTGTTCGTGTTCACGTTCAACCAGGAGTCGGGGAAAAGAAGGGCGCTGGA
GGATGGCCCGTGGATGTTTGAGAAGGACCTGGTGGTGGTGGAGGACTATGATCCGGGGAA
GAGGCGGGAGGACTATGAGTTCAATGAGATTCCTATTTGGGTGAGGATATTCAGTCTCCC
GTTGGGAATGATGAACGCAGACTCGGCAGAGGAGATTGGGAGTATCATTGGAAGCTTTGT
GGAAGCGGATGTTGGAGCAGATGGGATAGCCATGGGGAAATTTCTGCGAGTGAAGATCAT
AATGAATATCGACAAACCAATCATGAGGGTTTTTATGCTGGATGATGCGGAGCATGGAGG
AAGATAGAAACAGGAGAAGAAGATGAACATCAATGGAGGAGGGGAGGAGGAAGAGGGTGC
GTGGTGCCGGTTTGAATATGAGTTCTTGCCTGAATTTTGTTATGTGTGTGGAATAGTGGG
GCACAGTGAAAAGGCATGTGACATGAAGCTGGACAAAAGTAGGCAGGCGCAATTTGGAGG
TTGGCTTCGAGCGAATATGGGTCGCAGGAAGGTGCATGGCGAAGAGGCGGGTAGCTGGAG
GGGTAGAGGGAAAGGTTTAGGAGTCGCCAGACCCTATGGCAGCAGTCGATCTCAGGAAAA
GATAGGGAGTGGTAGTGATAGCCTATCCTGGCGTAAGGATAGCTCGAGGAGTATGAAAGA
GAAGACCGTGGACGCGGAGAAGGGGGAGGAAGTTACCAGTCCGCCCAAACAGAATGTTCA
TGATGCTAGGGGGAGAGGCCACCCTAAGAAGTTGCAGATGGTTGAGCAGGGGGAGGCCTG
GACAACAGACTGCAAGCAGGGGGGAGGCCATCGCAACTGAGCAGCTCACCAGTAATACCT
CCGCTGAGGGCATGGAGAATGGCACCAATTTGTTCCTAGGCAGCTCCGGGGAAGATGGGT
CGAAAGACACAGCTACACAGGAGGAGGGTCCGACCACAGCCGACGCGGAGGGAGGAAACA
ACAGAGGTGCTGGACAACGGAAATTCAAAAGGCTTGGACGGGAGAACAGGGTGGGTGATG
GAGGAGACCGAAAACCCAGTAGGTTGGCAGGGGCCAAGCGATCCAAGGAGGGGTAGGGGA
GGGAGCAGAGGCAAAACGAGGGCGGGCGGAGCTTTGCGAGGAGGTAGTCAGGGAGAAGGA
GGGAACGCCAGAGGCAACACCAAGCTTGAACTTATCGGCCGGTCTGTTGGAACAGCCCCG
TCGGGCGCAATGAAAACTTGTCGGATGGAACTGTCGGGGGCTCGGGAATGGCCTGGTAGT
TCAAAGTCTCCTCGATATGGGGAGAACGGAGGATCCCGACATCCTGTTCCTGTCGGAAAC
AAAGCTTACTGAGAAGGAATTGGAGAAGTTTAAATGGAGGCTAGGACCAGGTAACATGGT
TGCATGGAGTGCTGTGGGGAGTAGTAGATGGGTTGCTCTACTTTGGAAGAAGGAGGTGAA
GGTGACACTTAGGTCGTACGGAAGACGTCATATTGATGTGGATGTCATGGAAGACTCCGG
TAGTCTATGGAGGCTCACTGGGATATACGGAGAGTCGGAAGCGGAGCGTAAAACAGAAAC
CCGGCGTACACTGCGCTTGCTAGGGCAACAACATCGGCATGGGAGACCATGGATGTGTTT
TTGGGACTTCAATGAGATTCTAATGGATGGAGAAAAGGTGGGAGGGAGCCGTAGACCTCA
GGCATGCATGGACAGGTTTCGCGAGACCCTAGAGAATGCAAGACTGTGTGATATTGGGTA
CACTGGAGACAAATTCACGTGGAGGAATCATAGTAAAGAGCTGCAATCATATATATGCGA
AAGATTGGACCGCATCACAGCAAACACCGAATGGTGTGAGGTGTTCCCAGGCTTTGCTGT
GGTGAATGAGCGCCCGCGCCACTCGGATCATAGACCACTGGTCGTTAATACAGAGGGTGA
TGTTGGCCGGCAATTCAAAGGAGGAGACAGGGGCTTTAGATTTGAAGCATGGTGGCTACA
AGAGGAGGGGTGTGCCGAAGTTATCAGGGAGGCATGGGATGAAGGGAGGGCGGAAGGTTA
CAACGTTGTGCAAAAATATGCAGAAGGTGGCGAACAAAATGCGCGTATGGCATAAGGAGG
AGATAGGGAGTTAGCAGGAAGGCTCAAGAAGGCATAGTCAGACCTGGAGCAGTGTATGCG
TGCACCAGTTTCTGACTCAAAAGTTCGTGAGGAGGGAAGGTTGAGGGGTGTAGTGCATGG
TCTAGAGGAGAAGAAGCATACTAAAGCGAAGCAGAGATCCCATGTCGCTTGGCTCAAGGA
TGGGAACAGAAACACTAAGTACTTTATGGCGGTGGCTTCAGCTAGGAGGAAGAAGAATAA
AATCAAGGGGCTTAAGAGGGATGATGGATCGGTGGTGCAGGAGGGGGGAGAATTAACTAA
TTATGTGTGCTCCTTTTTTCAGGAATTATTCACCTCCAATTTGGGGGGCCATATGGCAGA
TCTCCTGCGTACGGTGCAGCCTCGAGTTACACACGCGATGAACACCCTCATGACGGCCGA
GTTCACTAGAGACGAGATCAAAGTAGCCCTTGATCACATAGGTGACCTCAAGGCGCCTGG
TCCGGATGGAATGCCCTCCGTTGTGTACAAGAGGAATTGGCCTCTAATGGGGGACCAGGT
TGTGGAGGAAGTGTTAGCTATGCTCAATGGAGGCGAGATGCCAGAAGGGTGGAACGACAC
TGTTATTGTCCTCATTCCCAAAGTTAAATCTCCGAGTAGGATTAAGGAGTTGCGCCCCAT
CAGCTTGTGCAATGTGATCTACAAGTTGGTGTCCAAGGTTATTGTGAACAGGATGAAACT
GATTTTGCCTGCGATCATATCAGACAATCAGAGTGCCTTTGTACGAGGCAGGCTCATTAC
CGACAATGTGTTGATCTCATACGAAATCTCAGATTACCTCCTACACAAGACTAAGGGGAA
AGAAGGGTGTGCGGCAGTCAAGGCGGACATGAGCAAGGCGTACGATCGAGTTGAATGGCG
CTTCTTGGAAGCAATGCTACTCAGGCTGGGATTCGGCCCCAGGGTTGCACAGCTTGTCAT
GCGCTGTGTAACCACCGTGATATATCATATCAAGGTCAATGGTGATCTTACAGAGCAGTT
TCATCCGACCAGAGTATTACACCAAGGGGATCCTCTGTCGCTGTACTTGTTTGTGATTTG
CGCTGAAGGCATGTCGGCATTACTCCAAGAGGCAGAAGGAGCAGGGCGGCTGAGTGGAGT
CAAAATCTGCAGCACGGTGCCCACTGTGTCCCACCTATTTTTCGCTGATGATTCCGTCCT
ACTTATGAAGGCTGGTCAGAGGGAAGCCGAAGTGTTGAAGGATATTCTGGACTTGTGTGA
GAGCTGCTCCGATCAATGCATCAATACGGAGAAATCCGCTGTTATGCCCCAATACCAAGG
ACGACGTGCACACGATGGTGAAGGATACCCTGGGGATTCAAAGCGAGACTTGGAATGATA
AGTATCTGGGTTTACCGCTACATGTGGGTCGCTCAAGGAGGAAAGCTTTTGCATACATTA
AGGGGGTTGTAGCAGGGAGAGTATATGGCTAGAAGGAGAAACTCATTGCGAAGGCAGGCA
AGGAAACTTTGGTAAAAGCCATTGCACAAGCAATTCCGACCTATGCTATGTCCTGTTTCT
ACCTTATGAAGACATTCTGTGAGGAACTCAGTTCGCTTCTGGGGAAATACTGGTGGAGCC
AACAAGATAAGGAAGACACCATCCACTAGATCAACCGGGAGAAGCTCACGAAGCCGAAAC
ATCAGGGAGGACTTGGATTCCGGGACATGGATTGTTTTAATATGGCCATGCTGTCCACGC
AGATTTGGAGGCTGATTCGGTGCCCAGGATCGCTGTGTGCTAGGGTGCTGAAGGCCCGGT
ACTTCCCCAACACTCATGTTCTTGATGCTACCCCGAAACCAGGCATCTCTTACTCATGGC
GAAGCTTGGTGCATGGGTTGGAGCTCATTAAGGAAGGTTACATATGGCGTATTGGGGATG
GGGTGAACGTCAATATCTGGAAGGACCCTTGGATCCCGAGACCATGGTCAAGACGAGTGA
TCACGCCCCGGAGGGGCATTCTTCTTGAGCACGTTAGTGAGCTCATCGACCCGGCCACTG
GCTCATGGGATGAGAGACTCGTCCACGAGACCTTTTGGCAGGATGATGCCCGTTATATTC
TGCAAATCCCGCTGAGGGAAGGGGTTCCAGACTTTGTGGCCTGGCAGTACGACAGCAAAG
GCTCCCATTCAGTTAAGAGCGCATACAAACTGCAGGTTAAACTTGGCAAACCTTTGACAC
AAGGGGACATGGGGTCGAGTACGGCAGCTTCTACTATCAATCAACGCACTGATGACTCCT
GGACCCGGTTGTGGAAGCTGAGAGGGCCGAGGAACATCCAGATGTTCGCATGGAGACTGA
AGCATGAGTCCCTTGCATTCCGATTAAACCTTAAGAAGAGGGGTGTCCCAGTGGAGAATA
CAAAATGTATCTTTTACAAGACGGTGGACACCTATTTATTAAGTGCAAAAACGCCAAGGC
AGTATGGCGAGAACTTGGGCTGGAGCAAGAAAGGAGGGACCTGCAGGAGATCCCATCAGT
GCATCATGCATTAGATTACATTTGGAGCCTTAGAGAGAGCAAGCAGATGCATATCCTCAC
TTTCTGGTGGCTCTAGTGGTCTAACCGGAATAAACTTAGGGAAGGAGAGTTACCGGAATC
CACGGAGGCAGTGGCTCGAAGAACAAGGGCTAATGTTTTGCAATATGAGCAGATATACAG
CTTGCCGAAAGCTGGGCAGACTCCTCAACGGTGGCGGCCGCCCCCT