Contig Data
morexGenes
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Map Locations of contig_88112 (4318 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_88112

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_80000 2 2783 bp MLOC_80000.1 Available Available LOC_Os02g09930.1, FRAME:+2, EVALUE:0.0, 13102.m01095 protein CSLA1 - cellulose synthase-like family A; mannan synthase, expressed





CDS Structure of MLOC_80000






Contig Sequence (4318 bp)

>contig_88112 4318 assembly3_WGSMorex_rbca.fasta
CTAACTTCCTATTCTATCAGCATGTCGCCATCCATATGGCTGAAGATAGCCTGAGCTACC
ATCTCCCATCGGGCACACCCAGTAACNNNNNNNNNNNNNNNNNNCACAGGAGTGAGTAAG
GACCACATGCGGATCAAGGTCGTAGTCCTGAAGATGACCTGTAAAAAATTAATACAATGT
TGTCTATTAAAAACTAGGTCATTTCTACAGTTTCATATAGCCCACAAAAGTGCGGATATT
CCAACTCGAGTTAGTTTGGCTAAACGAACGTTAACCCCGTCCAGCCACGTCCCAAATACA
TGTTAATGCTAGTAGGCGAGGTGATGTTAAAGGCAATATGGATTGAGCGTCATAAGAGTT
TAGCCATAGAACAATATGAATTCAGGGTTTAAAATGAACTTTTTCCTTTCTTCAACCATC
AATCAATTAATCAATGTCAATATACTTACAAATCAAGTGGTTTACTCTGACTTTTGGGTA
AGCACGTATGTACATACATATCTTCTCTAGTACTCCCTCCGTAAACTAATANAAAAGCGT
TTAGATCACTATTTTAGTTATCTAAACACTCTTATATTAGTTTGTAGGAAATTTGTAGGA
AGAGCCGGCCTGGTCGTTCGGTGCATGCATTCATTCTTGTGGCTGGTATGCATTGTGGCT
ACATAGATAGATAGATTGATAGATAGATGGATCGATCAAGTTAGCACCGATTGCTAGTGT
TTATTTCTTTCTTTCTCTCTGACTTTTTTTAGAGATGCAAGCAGTAGTAATGCTGGAGAC
GTTGTACGTACCACTATCGTACGTACTCACTAGATAGATAGATATAGAAAAGAAACAAAG
ACAGATACGATAGAATAGGTAGAATAGATAGAGAGCGAGGCCTGCGCTGGCTGGATTATT
AGCTGTATACCACTCATTCTTCATTTACGTACATACATAAGTATTTACGTACAGCTCAGC
TTTCTCTTTCTGTTATGCCTTTTTAATGTATATATATGTACATATACAGTGGTATGTAGA
CGTACTCATCAGGCAGCATATATACATACATACTACATCACGCTGCAGTGCAGCCTCAAC
TGTGCATTGTTTCACCGCGTGCCAGCCATGGCCGACTTTATAACCTTCCCTTTTGTGTTT
TTTATATTTAATTAATTAATTGCAATATACTACATACTCACGCGGCCGGCCCCTATATAC
TTAGCCTCCACCAAATTGAGTTTAGCCAAGGAAACTCTTCTGTAATCCATCCACCCATCC
AACTCAATCAATTGGGATTGGGAGGAGGAAGAACAATCTTTTTCTCTTTTCTTTTTCTAT
TCTATTCTATTCTATTCTATTCTAAAAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGATGA
AGGGGGTGAGCATGGTGACCATGGCGCGTGCGGCGTGGGCGGTGGTGCGGTACGCGGTGG
TGGTGCCCCTGCTTCAGCTGTCCATCTACCTCTGCGCCGCCATGTCCCTCATGCTCTTCG
CCGAGCGCCTCTACATGGGGATCATCGTCGCCGTGCTCTGGCTCAACAACCGACGCCGTC
AACGCCATTGCAGCCGCAACCAGAAGAACAAGGACGACGACGACATCGACGACCTGGAGA
CCGGCGGCGCAGACCGGCCCATGGTTCTCATCCAGATCCCCATGTTCAACGAGAAGCAGG
TCAATTATCTATTGCTCCTCTATGTATGATGGTTTTGAGTTTTGATATGATATGCATGAC
TAGTCCTGCTTGCTATGCGTGCTGTTACTTACTGCACGCATATGATGATCCATCATGCAT
AGAGACCGCGTGCATGTTTTTGTAGCTTTCTTCAAAAAAAAAATCAATCATGCAAAAGCT
GTTGCTATATGCATGCATAAGTACAACTGTAATTGTTGCACATATATAATGGAGTATATG
AACTAACTCTTGTTGGCTACGTTCGGTCCATCCAAATTCACTCAAAGACAAGATTAAAAA
GTAGAGTACATCAATAAATAATACTATAAGTAACGGCGGCATGTAAGACAAGAGTCAACT
ATCTCTCTCTGCTAGCTAGCTACGAAATTGATAGTAGTTTGTTTGTTTGTTTGTTTTTGT
TTGTTGTTTGTTTGGAGTAGTAGTTTGCACCATGCATGCAATGACGACGACTGAATCGAT
GAATTGGGTGATGCATGGCATGGCATGATGATTAAACAGGTGTACCGTCTTTCGATCGGC
GCGGCGTGCGGTCTGTGGTGGCCGTCGGACAAGCTTGTGATCCAGGTGCTGGACGACTCG
ACGGACGCCGGCATCCGGTCGCTGGTGGAGGCGGAGTGCCGGCGGTGGGCTGGCAAGGGC
GTGCACATCCGTTACGAGAACCGCAGCAACCGGAGCGGCTACAAGGCCGGTGCCATGCGT
GAAGGCCTCAAGAAGACCTACGCCAAGGACTGCGAGTACGTGGCCGTCTTCGACGCCGAC
TTCCAGCCCGACGCCGACTTCCTCCGCCGCACCGTGCCGCTCCTCCAGGCCGACCCGTCC
GTGGCGCTGGTGCAGGCGCGGTGGCGGTTCGTCAACGCGGACGAGTGCATCCTCACCCGC
ATCCAGGAGATGTCCCTCGACTACCACTTCTCCGTGGAGCAGGAGGTCGGCTCCGCCTGC
CACGGCTTCTTCGGCTTCAACGGCACCGCTGGGGTGTGGCGGGTGCACGCCCTGGCCGAC
GCCGGGGGGTGGAAGGACCGCACCACCGTCGAGGACATGGACCTGGCCGTCCGGGCGTCC
ATGCGGGGGTGGAAGTTCGTCTACGCCGGCGACGTGCAGGTGCGCAACGAGCTGCCCAGC
AGCTTCAAGGCATACCGGTACCAGCAGCACCGCTGGTCGTGCGGGCCGGCCAACCTGATG
CGCAAGATGTTCTGGGAGATTGTCGCCAGCCGGCAGGTGTCGGCGTGGAAGAAGCTCCAC
GTGCTCTACGGCTTCTTCTTCGTCAGGAAGGTGGTGGCGCACCTCGTGACATTCCTCTTC
TACTGCGTCGTCATCCCGGCCTACGTGCTCGTCGGCGGCCAGGGCCAGGTGCGCCTCCCA
AAGTACGTGGCCATGTACGTGCCCGCCATCATCACCCTGCTCAACGCCGTGTGCACCCCG
AGGTCATGGCACCTGCTCGTCTTCTGGATCCTCTTCGAGAACGTCATGTCCATGCACCGC
TCCAAGGCCACCGTCATCGGGCTCGTCGAGGCCAGCCGCGCAAACGAGTGGGTCGTCACA
GAGAAGCTCGGTGGGTCTGCCGCTGCTTCTGCTACCACCACGACCATGGCCACCAACGTT
AACAAGCAGGCGCAGGCGGCCATGAAGAAGAAGAAGAAGAGCCAGAGCAACAGCAGCGGT
TTCCTTGTCCCGGAGATGGTGATGGGGCTCTGCCTGCTCTACTGCGCCGTCTACGACATC
GTCTTCGGCCATGACCACTTCTATGTCTACCTCCTCATGCAGTCCGCCGCCGCATTCGTC
ATCGGATTCGGCTACGTCGGATCCCAATGAATCTGAATTTTGCCTTCTGCAGTCAGCATG
CATGTTGTTGTACCAATAATATACATACATACATACATACCTAGTTGTATCGCGTTACTA
AATAATTTCCAGATAGAGATGGAGCAGGACAATTGCTTGCCTGCTTCGTCAATTATATAT
ACTGTATTATATTCATTCATCCATTTTGCTCGCATCGTGTACTAGTAGCTAGCTAGTACA
AAACCAATAATAATTAATCTCATTTCAGTTTGTTGTCAGGCAGTAAATTTAAAAGGCATG
CATTTTCTATATATACATACATGTTGGTGAAAACCTACCTACAGTTTCTTTCTTTCTTTT
TCATACAAAGATGAATGATCGAATCCGAATGAAGATGGCAATATATATACAGTTGCATTC
GAAGCCATTTGTTTGTTTGTATACACAGTAGGACGTACGTGAATAGGATTTTTTTTTACC
ACTCTAGCTTTTGCCAAAAAAAAAAATATGTCACTTTAGATTTTAACATTTTATTTTTGC
CACTCTTAGCTTTTGGCAATTATCATAATTATTATTTTGTGACGTGGCAATTGTGATACA
TGGTCAAAAGCTAAAAGTGACAAAAGTAAAACAAATTAATTTTGCTTTTGGCGTGTTGAA
GATGAGAAAGAAAAAAACAAATTAATCCAGTGAGATGAGATGGGATGAGGTTTTTTTTTA
AGAAGAAGATAAGAATTTATTTACGTATTGGGATTTTGTTTTTAAAGAAGAAGAAGAGGT
GGCGTATTGAAGGCCCGATGTGTGGCCCACTCGATATGCCTTGTTGGAGAAGATGAGA