| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location | No map location | No map location |
Predicted Genes from contig_88056
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_79988 |
2 |
1945 bp |
MLOC_79988.2 |
Available |
Available |
LOC_Os07g27790.1, FRAME:-3, EVALUE:0.0, 13107.m02778 protein glutamate--cysteine ligase, chloroplast precursor, putative, expressed |
CDS Structure of MLOC_79988
Contig Sequence (9420 bp)
>contig_88056 9420 assembly3_WGSMorex_rbca.fasta
TACGTTTGAGACGTATCAATCATCTATGTTGCAAAAAAGGTGAAGACGAAGAAAATATTT
ATGCAACACCATCATTGTTGCAAATGTCCTCTCGCAACTATCGAACATTTCCCCCTCTCT
GATGCCCCTGACCAGCTGGTGTGGAAATGGACGATATCACCTACACGGCCCGCTCCTGCT
ACCTCGCCACATTTCAGGGCTCTACTACCTGCTACGCCTGGACGCTCATTTGGAAGAGTT
GGGCACCGTCGCGCGTAAAATTCTTCCACTGGATAGGTGTTGGACCGCTGATAGCCTCTC
TAGGCGGGGCCTCCAGCACCAGGTACGATACCCATGATGCGACCAGTATCCAAAGACGAT
GCGCCACCTACTCTTGGAATGCCCCTTCGCCAAGCAGACTTGGCATGAGATCCATGCATG
GCTCAAGATGACCACCGCAGGACCAAGCGACGAAGGCACGCTCATGGATTGGTGGTGCGC
GCTAAGCAATGCATACCTACAATGATGCGGAAAGGTCTTGCCTCCATCGCCCTCCTAATG
TCGTGGATGATTTGGAAGATGCGCAACGAGTGCATATTTGACGGTGCCCAGCCCCTCGTC
CATGTACTGGTCTCTAAGATCAAGGACGAAGCTGAACAATGGGCACGCGCTGGTGCACGT
GGCCTCAGTGTCATCTTGCCCACCACCTGGGATGTACATTAAATTCATATTCATGTCCCT
TCCTGAACTTGCTCTCTTACGAGGGTTGTAACAAAACTCTATCTATTCAATGCAACGAAA
CGCAAAATCTCTTGCGTTTTCTCAAAGAAAAAATTCAACTATGTTGAAAAAAACTTGAGA
AAGAAAATAGGGTGAAAGTAACGCTTCAATGATTTTGCAACAAAGCAATTGTTGCAGAGC
GAGTTGTGCAAAATCTATTGCAATTTCAGACACACCTAGTTTGTAAGATCAGGCGACTAT
TTGTGACTTAGGCCATGTTTGGAACCACTCAGATTATGTAATCCAGTTTTTCTAATCTAT
TCTGTCTCTAAACAGGAGAGATTATGATGTAGATTATAAAAACTNNNNNNNNNNNNNNNN
AAAAACTCACAATCTACTCTACCCAGCTAAAATCAGATTATGGATTGCTATTGATCCATT
ACCCTTATAAATTTGGAGATAATTACATTCCTGCCACCATCACCCTCCTTTAAAAAAAAC
AAAGGACAAATAGGTCATTATGCAATGTAAAACCTGAATTACAGTTTATATAATCTTACC
TTCAAACATGCCCACCTAGATTATTTTTNNNNNNNNNATTATATAATCTATCTTTATAAT
TTAGATTATCATAATTTATTATGGTTTCAAACATGGCCTTAATCCAACGACGCAAGAGGC
GGATCGGCCCTTAGTGTGACCGTTAGATTATTTCAAAAAGGAAAGTGACCCTTGTTTTTT
TAGGCTCAAAATTCCTGCCATTTCGAATATGCATGTAATTAATTGTTCCCAACTGTCTAT
GTGAAAGAGGAAAGCGCGTTGGCCACGGATCTAGGAAGTGGCTGGCTTGAAAGGGGTAGG
TGTGGACTGCGCCATGAGGAGAGGAAAGCGAGGCTGGATTTGGTAGTGCCGTGCGTGCAG
CCATCTTGTACAGGTGCTTCGTCAGAAGGGACTTCAGGTATTCGTTTTCTTCAGGAAAAC
AAATAGAGTTGAGATTTGAGAACATGCACGAAGCACACGTGTGGTTTTCCTGTCCAACTA
GACCGCTCAACTTATAACAAGACTGACGTGTATATATATATATATATATACTTATATACT
AAAGCCGCAGCGATCCCTTTTTCCTGTTTTTCTGGACTTTTTTTCATCATTTACTGTTCA
TTTTTACGGCGATGTCAACATCACTAAACAGTTACTTGATTTCTTTTCCTGAATCTACTA
TTTATTAACGTGTCCAACAGTGAATAGTAATCTGATTTCTTACGTACAGAAAACATGCTA
ATCATTAGTATTTATGCATAATACCATTTATTATTCTTATCAAACATATTATTTATGAAC
AATATTCATAAAATGGCTTCTTTTTATGTACTGTATATCATCATAGGTATTTGCATTTCT
AAAAAGAGATCTTTATGTATATTTTATTACCTTCACAGAAAAATGCTAATCATTAGTATT
TATGAATAATACCATTTATTATTCTTATCAAACATATTATTTATGAACAATATCCATAAA
ATGGCTTCTTTTTATGTACTGTATATCATCATTGGTATTTGCATTTCTAAAAAGAAATCT
TCATGTATATTTTATTACCTTCTTATACGTACAAGTACTCTGATATTATTATTATTTTTA
TTGCTTAGTAAATTGTCTACGGGTTTCCTTTAATACAATTATACCAATGCTATCTTTAGA
CTTATATATAGATAATTCCTAAAGTGAAACACACAAATCTAATGGAATACTTAAATACGC
AGAGGAAAAAAAATAAACCAAATAAATACCAATGTAGCAACTTAGTTTGATCTAATCTAT
ATACATATTATCTAACAATTAATCTTACCTAATGGCGTTGCTCATTGATAATAAAATGAT
CGTCTTTCCACTCCAATATTACCACGAAGCCAAAATCTGAGAAAATATCGCATCTTGGGT
GTCAACCTTCTTTTGTTGTTTAAAATGGTATTCTCAATTATTATTCATTACATTCATTCT
TATGGATTGTTGCCTCAAGATTTTTTTTTCTAACGGTTTCAGTGAGATCTCATTTTAAGA
AAACAGTAAAACTAATAAATTGGAACAGATAACCCAAATAAACCGAAACACTATTTCTAA
AACAGACACTTCGTATGCAACAGTGCTTCATGTGACCAGTGTTTCCATGCCCACTGAATA
AACTGAAATATACCCACATCCATAGAAAAACTTTATACATAAACTGTAAACTGGAATAAT
ACCAACACATTGCATTCGCATAAGCAATAATCTCACGAAAATACAAAAGGAAAAACCTAA
GTTTTTCTATGATGAACGATTATTTTCCTTCTTTTTATTTTTTGTATTACCTATTGTTGC
ATTATGATCTATTAAAGCTCTACAACCACTATGATCGTTGCCAACCCCACCATCCTTCGC
TCACCATGTACGATAATAGAAATCTCACTCTATCAGCATTACTCACACGTACAAAAAAAC
ACCTTTGATGCTACTGATTCTAACATTGTTCGCCTGCTAAAACTCTCAGATGAATACTAT
GAAGATATGACAGACCATATATAAATATAATACACAGAGATCATGCATGAAGAAGTCCCT
AGCATTGAGATAAGAAACAATAAAATTTAGAAATAATATAACACTGATTCACTTCTCTTA
TTGAATATCGCCAGGTCTCACATGTTAAAGAAATTCCGCAAGGACAAAAAAAGAAGAAAC
ACTAATGATTTATCCATATAAAGATTAATTTGTTGCACCGTACATAGAATGATTTGTTTT
GTACCTCGCCTGTACTATTTAACTCTTTGTCATCAATAAATCACGATTCATTCAAAACTT
CAATCGCATGATCCTTAAAACGCTTCCGTTCTATTAAGAACATGAAATGAACTCTACCAA
GAATGGCCTTTGTCGCTCTATACAAAAAACAAGTCAAGCATCTCTACACGTATAGACAAA
AGAACAACTACGACGAATTTAAACGTATTATAAATAACTTTATTACATCCGTGAATCGTC
CAAAACGAAACTACACCTCCTTTCCTTTCTATAAACCCCCCCAAAAAATTCAACCAGCTA
AACATGAAAAAGATTACATGCATGCAATAAAAATAAAATTGAAGTACTTATTCAAAATAT
AAATGAGACTTTCACGGGCGCGGCGTGCGTCGCGCATCTTCGCCGCTAGTTACTCCTAAA
GTCACAGATGACAGCATAGCCGGTCGTCTATGCATGCACACACGGAATGGACTCTTTGAA
AGAAACAGCCACAGGAAACTATTTAAAGTGCTCTATCCTGATCATCATGCGTCCAAAACA
CTCTGAATTATTTTCCAGGAAATGAGGTTCCATCATCACACGACAGAGATGGATTTATTC
CGAATACAAGCCGTTCATCAGGGGAAGGTGAAAAAGGGGTCGGTACAAACAGGGGTTTGT
TCCGGCTCCCTGGAAATGCGAGAAAAATCGTAAGTTGTGAAAGATCCCCCACAACTGGAG
AAAGAAAAACAGCAAGCCACAAACAGAGTGTTCCGAGCTCAAAATTATTCGCAGCCGCGA
GACCGGAAGTAGGTTTCCCTCGTCAGGTGGCTTGTGGAATTGAGGACGGGATTTTTGTAC
AGGGATACAGTCTGAAGACCCTGTCCACCTTGTCCAGCGTCCACCGAAGTTATATGTGAT
TCAGTGTATCAATATAACAACTCCTCGAAGACGGGGTCCACGCTGCGCTGCCACTTCGTC
TCGTATAGATTCAGAAGCTTCTCAGCAGGTGTCACTCCTGCAAAAGAGTAGGTTGGGAAT
TATCGTCTGGCGAAGGTGCAGTTCACAGCCGACCGTGGCAAAGCTACTCCCTCCGTATCA
AAATATAAGACGTTTTTTCAGTTCAAATTAAACTGAAAAACGTCTTATATTTTGATACAG
AGGAAGTGGTATTTATCTTGACCAAGTGAATGAAGTGTTCTGAAAGCGTCACCTGTTCTA
ACAACTTCATCGACCTCTCTCAGGAAACCAACCTCCTTGTACCCTCTTCTTTCTAGTCCA
TTCTGCACCACCACAACAGGATCGTTATCACCAGCAGTATGTTTGTGGGCTTATGGGGGA
GGATTAGTAGCCAAAAATAGAAAGCTACTGTACTTACCTTAGCTAACTGGAGAACATCTT
CAGCTAAATCTCTTACATACCCATCCCGGAATGGTGTCTTCAAACCAGTAACTGGCACCT
GATGAAATAAAACACACAATCACTCACAGTTAAAGTTGAAATTTATTCCTCTCAAATCTG
CTACGTATTGCAAATTCTAGTCTTCTAATTGGTGTTTCCTAACGACAACATTTCTACCAC
CACTAAGGACAAAGAGCAGAAATATCTTGAGATACCTTCCGTCTCAACATCTCTCTCTCT
TCCTTTGTCCAGTCAGAAGTCATGTCAATAATGCTCTGTAGTGACTCGTCGTCATACAAC
AACCCAACCTGCAGAGAAGGACATGTCAGATGCAAAGCTGATTCTGAGTTTTGCGACGAC
ATGGAAGTTACTCATTCCAGTTCAAAATATAAATCGTATTTTGACCATGATCTCATATAA
TGTTTACTTGTTTAGTTATCTTTACAAGATCAGTCATAAGAAGTGCTTTTGAATACAATG
GATCCAATATTGTCTATTTAATGCAACATAAACGACATGTTATTAAAACTAATTGTTGGT
CAAAGCGCGAATTTGGACTGTCAAAATGTGTCTTATAATTTGAAAAGGAGGTAGTACTAA
TTAGTACAGTAACAATGATCAGCCTTCCCATGTCTGTGCTGTAAATGAGACGGCATAGAT
ATACAAAACAAATGCAGCAAGAGTCAGCAAACAAACCCAAAATGCAGGCAAAGCACACAA
TTTCCTCCAAGGTCCACCATCAGCACCTCTCATCTCCATGTATCTCTTCAACCTAACCTG
CAAGGAGAAAAAGAACAACTGATTGTTGAATTGAAATAACAACAATTAATATGTCACCAT
GCTAACTAAATCAAAGGTAAACCTCAGGAAAAATTGTTGTTAGATGGTTCTCCCAATCGT
TCAAAGTGGGCAACTCCCCTGGAACCTGTGGGAGCTTTCCTGCCATAAAATCCTGCAAAA
TATACAGAAGCCAAATAAGAGTTCTATAAATTTCCAACAGCTAAAGTCATGTATCCAAAA
GCTTCAAAATAAGATAACATTTACAAAGTTTACAGCATATAACTGCAGAAGTACTAAGAT
ACTGGAGACAGGAAGAGACCCGAAATGACATCCCAGTACAGTCAATGTAATTCTTGTTCC
GGTATACAAAATACATTGGTACGTCCAATGCATAGTCCACATATTGCTCAAATCTGCAAC
CAAGAACAAATTATAATCAGAAGTCATTTAAACTGAAAGCCTCAGTTTATGTAGGAATTG
CTGTTGACCAAAATGACGTCATCAATCAAATAGCAGGCATTCTGGATGGCGAACAAGGAG
ATGTTTGTATTAATGCATACCCGAATGTGTCATCAAAAACAAAAGGAAGCATCCCCGAGC
GGTTGTTGTCAGTATCAGTCCAGATATGGCTGCAGATAATGATAACGACGTTAGCAGCTT
CATTTAACAAAACAGCACATTAAGTTCTGAAAGCAATGAGGTAAACACCTTCTTAAACTG
AGAAACCCATTTGGTTTTCCTTCTTTGAAGGGAGAATTTGCGAATATTGCTGTCGCGATC
TGTTAAAAGAACAAGTCAGGTTAGTGCAAGAGCAACAAAGTAAATTGTCGGGAAGAATTG
AAGGTAATACAGATACCCACAGGTTGCAATGCAAGGCTAGCACGGAATTTTCTTATCATA
TCTTGCTCAGAACTGAAATCGAGATTAACCTGCATGCCACAATAGTGAACTCTTAACTTT
AGTTGTTTAGTGAACATATGAACATTGTATACTAGTCTGTTTGATATGAAGTGAAATAAA
AGGCAGCGAGTTGTCAAAACAGCCCATGAACACAAAACTAAAAAATGACAGTTACCTGTA
CAGTGCACGTGCGGAACATCATATCAAGGCCAAGAGTACCAACTTTAGGCATGTAATTCC
TCATAATTTCATACCTTCCCTACAAAGTAGCGAATTGTATGATCAGACTTTAGAGGAACC
AGTAACAGTATAATTATGTTGCATACGGCAAATGTATGCCTAAATTGCAAGTCAGTTTGT
GCATGAAATAAGACTGCAGTGTGGGTTACCGATCATTTGTGCTAACTGCCAAGTGCCCAA
TACAGTTGCAATGGAGGATTTCGCTTAATGGTGTACCAAGCAACAAGGGGGTGCATCAAA
AGCCAGCATTTCGATATCAGCCCCATGGAACTATGTTGTACTATAAGTATTTCTTGGATT
TGCAACTTCATTTCTCGGAAATTAACTAGACTGGGATATAAATAAAAAAGTAAAAAGGCC
CTTTAACAGTCTGGCAACAGCACAGACTTCAAAACCTACATTTATGAGGTTTAAGGAAAG
AATTACCTTGGGCATTATTGGTATATCAGCTAGGGCCCATTTTGGCTGAAAACCCATTCC
AAGAAATCCTACTCCCAATTCCTCTCCAACTGCTTTGACCTACAAAACCAGCAGAAGTTG
AAATCATAGAACAGTATAGGCCTTTTCCACCAAAAATAAATACATCATAGTACAATAACT
TTCAGCAAGTAAAACCTAGAAGGCAAATGTACTAACAGAACCATGAAACAATTCAATTTG
TTTTTCATGAACTCAGCCAGTCTAATGGAAACTAACTCCGTGCCCAGCAAGGTTTCAAGG
TCTTACAGATGCATGCATAAGATGATACAAACTCCCAGAAGAAACTTGGAGATATTGGTG
GTTGTTTAGTTCTCAATATAATTTGAAGGATATTGGTGGTTGGTTGGGATGTAAATATAA
ATTTGGTGGCATGGAATTTGTACAAGTTCCGGGATATGAAATAGGATAATCTAATTAAAA
AGATTCGGGTGGGAACTAAATATGACATCATGATGTCACAGGTGAAAATCCCACAAAGTT
ACATTTCATAAATTTCTGTAAAAAGTGAATACTTATACATGCAACAGTTTGCTCACTAAT
AGATATTTACCTGATAAAGATGTGAATTGACCTCCGCACAAGTTTGATGTAATGTTTCAA
GGGGAGCGCCACTAAGTTCAAACTGGCCACCAGGTTCTAGTGAAATGTTTTGCTTTCCCT
GCATCCATATAAATAAGTTGTCACAGAATTCACTATTGATTCAGTGAAAACCATATATAT
CATATTTCTTTCCAGGCATAGTACCTGCTTGAGACCAATAACATGGTTTTCTTCCATTAT
CTTGTCCCATTCAAATCTCTCAGACAGCCCATTGAGTATGGCACTGATCTGATCATACGT
TATAGGGCGCAATGTTTTGACATCAAAACCAAACTTCTCATGTTCTGTGCCAATTCTGCA
TAACAGGAAATTTACTCACGGAATGGACCAGATAACTAACCGAAATAGTCGGTAGGAATC
ATACAGGAATAGAAATTCAAGAAAAACAAAAATATATTGTCAAATCCGTAATAATTTGAA
CACAGGCACCAGAACGATCTTCATCTCCAATAAATGTACTGATTGGAAAAAATGAGTACA
CTCATCACATTAACAAGATATATTAAGTACTATAGCATATCTAATCTTAGTGAGACTTTT
TCTGTCATTTAAGACAATCATTTGTAAGCTTACTTTTTCCACATATAACATACTCGTATT
AACTAACATATCAGTTTTTGTTGCTCTATGTACAAATTGCAATTTTACTACTTCCAGCAT
TATATGAGTGCATGAGCTGCGCCATTTGCCAACAAGATAACACAATGTGTCTCCAATTCA
GTTCCTAGTCTAGTATAACTATGCTAACCAATACCATGTGCCCCCTTCCATGAACAACGC
AGAGCTTCATTTGCTAATTAGGCACAACTAAAGGTCACTTCGACGCATCCGCCCTCTTAC
TATTCCTACAATTTCAAACTAGTAGCAAACATCACCCAGTTCGTCACTACAAGGCACTGA
CTGACTCATGTGAAACTTCCACCGCTCCAGGGGCAACTGAACATTGAATACAAAATCCCC
AATTGCAGAGTTAAACAGCAAGCTGGGAAGTGAGAATCGGCCGTTCCAGCCGTTCCAGTT
CCAGCAGTAAGTAACAGTACGGGAATTCTACCGCCATGTGGAAGCTCCTCACCTCCAGTT
CTCCTTGGGCTTGCACCCGGACGCGAGGTAGGCGACGAGGTCCTCCTTGGTGAGCGGCTC
CGTCAGCTTGGCCGCCTCCTCCGTGGGTGGGCTGGCCGCCACGGCCCCGCCGCGCCGCCT
CCCCCTCCTCGCCGCCGCGGGGAGCCCGACCACCGCGAACCCCGTCCGGCCCCGCCTACC
GGTCCCCGCGTCGCCGTCCGGCGGGACTACCCGCGCCACCGCCAGCCGCGACGCGACCGC
CATCGCCACGCCCAACAGGAACCTGAGAGACGGGAAAAAATCCGCAGAAAACGAACAAAA
AGCTCAGCGCGAATCGCGGGAATACCGACGCGACGTCGCCATCGCACCCCCCGCCCAACC
CACCTACGGAGAACCGGTACGATTCCGTCCGCGATTCGCCGCGCGAGGAGACGGAGACGG
AGACGCGCGCGCCGCCGTCCGCCGCGGGCTCCGACTGCGGGGCCCTCATAACTCGAGATC
