Contig Data
morexGenes
Links



Map Locations of contig_8801 (7016 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_8801

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_79980 1 480 bp MLOC_79980.1 Available Available None
MLOC_79979 5 1949 bp MLOC_79979.2 Available Available LOC_Os04g39090.1, FRAME:+3, EVALUE:3e-104, 13104.m03773 protein SAM domain containing protein, putative, expressed
MLOC_79981 1 924 bp AK355047 Available Available None





CDS Structure of MLOC_79980






CDS Structure of MLOC_79979






CDS Structure of MLOC_79981






Contig Sequence (7016 bp)

>contig_8801 7016 assembly3_WGSMorex_rbca.fasta
CCCCCTCGCCCTTCCAGGGCTCCGGCGAAGGCTGTAATCTGCGGGGAGCGGCGGCGATGG
CATCCACAGCGAAGGTCACCATCACCCTCGGCCGCAGCGGTCAGGTGAGCCGTCGCATCG
GATCTCCGGGCTCTAACGCTCGTGGGATTCCTCTATATCTTGAGTGCTCGTTTGTGATTC
GGCTGTGCCCTCGTCGCCCGTTTGGTTGATTAGAAACGAGACGGATGATCGGGTGCAGTG
CAGCTTTAGTCAAGCCGTAGCTGTAGCGCGCGCCGCGAGAATAGATGCTCAGTTTTCACT
AGTCATAGCTGCGATTTTAGCGCGTCGAGTGGTGGATACCTTGTTGGCTTGAATGTTCAT
CTCCCCTGAAGGTTACAAGTGAGTGTTGCATCAAATGCTGTTGTTGTGGTTTCCTGTAGG
TATTGATTGAGGGTGATTAAGGTCACATGATTTACTAAGTTGTTGATAAATGCGTTAGTT
AACACTAGTTTCTGGATCTCTTTGCCACTAGTAGGTTTGTGGGTGTGCTGGGGGGTAAGT
ACATGGCTCACTATTAGGGATAAATGTCACTTGGATGACTAGGATCCTGACACATTTTTG
AGTTGAGGGGAAACCACTGTATCAGGGATGTTTTCTTGTAACTATTGTTCAGACCTTCAG
GGCATTGCCCTGTTGTCCAATGGTTGAATGCTCTCTGCCGGCTGTATTGACTTATCATTA
TTGCAAGTCCTGAATTCAGAGCTGTGTCGGTGCTAATCGTAAGTTGATAGAAGAATGCAT
GTCAATTCATCTCCTCCCCGTTTGCACTTTTACAATTTTAGCTGACCAACTCAGCTACGA
CTTCATTCCATGGCTGGTTATGTTTTCCTTTTTTTTTGGATAATGGGGTGCTAGTAAGTA
CTAGTAACTATCTTGAAGTTGGTAACAGACCCCCCTCCCCCTGTTTCAGGCCATTCTGTG
TTGATGTTAGCATGGATGCAAGTATCTTGATTGCGTATTTAAATTATTTTATTTCTTTTA
AGACTTGAGAATGCTGCGTCAATTATTCAACTTTGGCTTCCTCGCCTTATTTTTTTGGAT
TGCAGGTTGTCAAAAGGCGAACTATTTCTGATATGGGTAATGATGATGAAGTGCCAGTAT
CAGGTAGAAAGCGACCTGTCCGAGAGAGGTTAGGAAATAATGTGGCTGATTCTGATTTGT
ATGGAAGTCAGCAGAGTAACAAAAGGTATATTTGCTTCATGTATATTACTCAATGTTTAT
TAAAACAGTGTTGCAAAGTTTTTTATAAGAAGCAGTATACACAATGACCCTTGCATATCA
GATGATTCAGATGGTCATGGAGTGAATCCCTTTGTGGTGTTTCACCCCCTATTGTGTGTC
ATCGCTTCAGTTTTACAGTCCTCCATACTATGTTCTAATGCATGTTAGTGTCAGTTTGTC
ACTTTATATGTTCACTTGTCAAGTAGGACCCTGCCAGTTCATCAGTTAGAATGCTGCATC
ACATGTCTCTTTTATTCGTGTCCCTGCATGTTTTGTTATTTTCAGTGAAGTGTATTGCAC
TTTGTGTCTCCTTTGCATATTTATTCAATTTTAGCTACCTTGTACATCTTTTGCACTTTT
ACTTACTATATTTATTTCGTTTTATTAAGAAAGCACTTGCTATCTGCAAGTTCCACTAGC
TGTCTTTATGTTCAATTACTTCTCATGCTCCAGACTGCAGCTCACTGCATGTCTCTTTCT
GTTGTATCCTCAGTTTGAGCATCTGTTGAAAGTGTTTGCTTATAAATTTTACTCTCCTAT
GCTGTTCTCTTGCAGACGGCAAACAGAAAGCAGTAGCTCCCAGCTTGGAGATGATGGTTT
GGGTGATGATAAACATTTCATTTCCACTATCAGTATTCTAAGATTTCAATACTGGTCTGT
CTGTCTGACATTTCTTTTTGTTTTCCTGCATACGTTGGGCTGTATAATATTGAAGCTCGC
CAGATTGGCAGGGATGATTTAAGGCTGAAGCTTATGAGGAAAGGCTTGACACAGAAGAGC
AACAGTGAGGCAGAACAGAATGGAGTGGATCTCCGTGAAAAGCTTTCCAGGAAGTCAAAA
AAACTCCAGGGATATGAGGCAAGAAGGGGTGATCCAGAATCAAGGTCTAGTTATGATGAG
GGAGAAATCCCAGAATCAGGATCTGGATATGGTTCGAGGGGGAGGGTCCCAGAGTCAAGA
GCCTCTACTCTTGTAAGCCAAGTGCCTTCTTCTAGGAGTGCAGATGGGTTGTTCAAGTTG
GAGTCTTCAGGAAAACCTTATCCCTCGTGGACCGCTGATTGTTTGAGGTATACGTCCCCA
GACAAGCTTCCAAGTGTTCGAAGGGACATGACTCCCCCAAGAAGTGTTCGAAGAGGCATG
TCTCCCCCGAGGGCCATTCGGAGAGGCATGTCTCCCCCGATAAGTGGTCGAAGAGGCATG
TCTCCCCCGAGAAGTGCTCGAAGAGGCATGTCTCCTCCAAGAAATGTTCGAGGAGGCATG
TCTCCTCCAAGAACAAGAAGTGTTCAAAGAGGCATGTCTCCTCCAAGAAGTGTCCGAAGA
GGCATGTCTCCGCCAAGAACATATGATCATATCACAAGATCTTCTAGTCATATCACAAGA
GATGCTGCTGACACATTAAGAACCCATCAACCTTACGAAGACAGCTCTACCATGGGGATC
GATAGAGGACAACAAACTAATGGAATCACACCATCTGGACGCCGGCCTACATCCCCTGTG
CTGGTTTGTATCTCTCATATATCTGAAATTAGCCTGGTTTCTGAATGTTCACTTTATTAC
TTTATTTTGTGCTCTTCATTTTCAATGATCTTTTGGGACTGTGTCTGTTGTTTGCCCTAC
AATGTTGTTTATGCCATGAAATTTGTCAATTATGATTTGAAAGGGAACTCGAAGTCGAAT
GTGAACTTATCTCTTCCTATAAGGTTCATCTTGCATTTTGGTTAGGTTGCAGTGATGTAT
TTGCTTAGTGCTGCATGCTCAATGCAGCCGGCTTCATAGGATCAGAATAGGACTTTCGTC
TTCATAGTTCATAGAACACCCTGATACATTCTAAAGTTAACATTGGTAAAACATGCTCAT
TGTTATGTATGCGATATATCGTCATGTGCGCTGACCATTAGCTCAGTTTTCTCTTCACAT
TGCCCTCGGTTACAGGCTTATAGCTGAATTTCTGTTCACTTTGCCCATAGTTGTTGATGT
GAGAATTTTTCGACATCCAGTTATGCTGACCAATGGCTAGTCTTGCGCCGATTATATTAG
CGAGTTTCTGTTTATGCAATCATTGTGTTATGTGATTTTGCTCCAGATTTTTTAACATTG
TTATGTGTGATTTGCAGAAAGAAATACCGTCGACAGTTACTGGATTACTGAATTCAATGG
GACTTGAGAAGTATGTTGTTCTCTTTCAAGCTGAGGAGGTGATTTTCCATTATCTAGACA
TATTTCCTGTAGACATTAGCATTTGATGCCTTCTGTTTGATGTTTTGCATGGAGTTATGA
ATTTATGCCCCCGAGGAGCTCTAGCGGTTGTTTTTGTATAAGCTGGACAGTTCATTATAA
TTTCTATCCTTCCAGTCTCTTATCTCTCTTCTTTCACAATTATCTTGCATTAAAACAATT
TCATTCCTATGCATGTTCCTCTTGACTCTACCCTATTCGATTTTTCAACTACTCCCTCCA
TCCACATATATAGGCCCTAATACGCTTTTTGAGGTAACCTTTCACCAATTATAGAATTAT
TAGTATATGAGATGTATGATATAAATTATATCATTAGAAACTCCTTTCACATACCAATTC
GATGGTATGCTTTGTGTAACATGCATGTCATATATTATTATGCTAGCCCGTGGTCAAAGG
CAACGCCGAAAAATGTATTAGATCCTATATATGTGGAGGGAGGGAGTACCTGTGTACCAT
TGAACGCTTTCTTTTTTTCTTTCTGCAAGATTGAGAATGTGTTTGTCAGTCCATTCAAGT
ATACTCTTGAATCCATGAGAGTATGTTCAGACATACTACTCCCTCCGTCCTAAAATAACT
GTCTCAACCTTAGTATAAATTTGTACTAGAACTAGTACAAAGTTGAGACACTTATNTTGG
GACGGAGGGAGTATGTTTTATTATGGAGTGTTCATTTTCCTTTGGTTTACTTGTTTGCAG
GTTGATATGGCTGCATTGAGTCAGATGAAAGATAGCGACCTCAAAGATATGGGAGTACCT
ATGGTAGTGTTTGTCATTCAATTACTAGCTGCTTTACATGATATACATAGTGATTTTCTT
GCTCTGAGTATGTTTTTTCTCTAAAAGCTATCTGATTACACTGTCAACATCAAATATTAA
TGGGATTGAAACGTTAGACATGAGTTGCAGGCTTTCAGCAGAATTGAACTTGATAGTAGT
TAGGAATAGTGTCTGCATTATATGCTATGTTTTTTCATTGTAATTTCATTACCATGCTTC
TAGTACTTGAATATGCATAGTGGAGGGATTTACCTTCAGAATCTAGCAAGAGCATGTCAA
ATATGGCATTGTACTTGTAGTAACCACCGCTTTGCAGTCTTGTACTCCCTCCGTCTCAAA
ATAAGTGTCGCAAAATTTGTACTAGGTTAGTACAAATTTTATACTAGATCAATGACACTT
ATTTTGGGACGGAGGGAGTAGAATTTAGGCTTTCTCTTGCACTTTTGACTGGAGTGTCAC
CATTGTGATGGATCAGGGCCCCAGGAAGAAGATACTCCTTGCGGTGGCGCCTTACGGAAA
ACAACGGCACAGATGAGCAGCATGTGCCCTGGGACGTTGGAACATTTGCTGGGAAATGCA
TTTTTATCGGTGTAAGCAATGCTCTGCTGCGGATCTTGTATATCCTCACTGGTAGTCTGG
CTTAGTTAACCTTTTTTGTCGCTGATAGATGAATGTCGCCCTGTTCCTGGCTTGTGTAAA
GTTGTGTCTGTCCGCTGATGCTCCCAAATCCTGCCATTCCTGCTGTATTTGTTAAGAGCA
GCAGTTTGAAACAGAGTGGATACAACATGGTCTAGCGCCATCTTCGATCTGGACTTTGTG
TATTTTGGGAGCATAGTGAGAGTCGCAACAAATCCAGTCGTTTATGTATGCCAAATGGCC
AACGAATTCCATCAGTCTCATCCCAAGGGTTGGGGATTTTAAGGCTTGTGCATGGAGGTA
GCAGATTGCCCTTCGTTCGTAAATATAAGTCTTTTTAGAGGTTTCACTAGGAGACTACAT
ATGGATGTATATAGACATACTCTATAGTGGAGATTCACTCATTTTGCTCGGTATGTAGTT
TCGTAGTGAAATTTTTAGAAAGACTTGTATTTACGAAAGGAGGAGGTACATTTGTTGAAT
TGTCATTATTCGCCACGTGGATTATCCTAGCTGTGTTGCCTGTATAGTGTATGCCGGTGC
CCCAGCTTTTCAACTAGGTGTTGTTCTTCAACAATGTTTAGGACGTTGAGCATGATTAGT
TACTAGCAAGGACTGGTTGATTATGCACTGCAGCTGAGTAGCGACGGCTCAGCAGGACCC
GTGGAAGCTGTGCTGCGCCAGTACTTTTTTTTTGTTATCATTATGCAACGACCCAAACTA
TTGGCCCTGGAAATGGACGTGAGTGTTTGGCCTAATCATTGTTGTATCCAAACTGTCACA
ACAAGGGCACCGAGTCGGAAAAATCAGACCGTCCATGCACCCCCAGATGCCTCCCCGTAC
CGGCATCCCCTGTCCAGGGTCCACCATTAAAACGCAACCGAAAAAAGCTTCACCCAACAT
GAACCGGCCCGGCGCTGTACGAGAAAAAGGCAGCAGCCAATGCTGCCTTGCCCTCCCATG
TGCCAACGGCCGGCAATCCGCTCGTGTCACCTTTGTCGCCGTTGGTCGCGTGATTATGCT
CCGTTAGCTGCGTAATAACCACAAGGAGCTTCGGCGGCGGCACTTGAGCCTGTGATGACT
ACGCGGAGTGTATGACTGGAAGTGACAATGCATGCACAAGATGAGTCCAGGCGACGATAA
TGACTCGCAACAGAAAGGGAGATGCCAACGGCCCAGCGCCACTCGCTGAATTGGACGGCC
TTGGTTTGGTCGCTCGCTTTTCAATTCACAAGGCCGAAAAAAGCATCACACAATTCACAA
GACCGAAAAGCATCGCAATTCACAACTTCATTCAGAAAATCAGAGCGGACGCACACCAAA
ATCCAATCCTAATAATACCGTCCAGTTCTCATCACCGGACATAAGCCACGCGCCGGTCAG
TCGAGGATGTCGCACTGCCGCCTGACGACGCCCTGCCGCCCCGTCTTGACGCCGACGGTG
CCGAGCTTCTGCATGGCCTTGGCGAAGTCCTGGAAGAACGCGGTCCGGTTGTCGGCGTAC
TGCTGGACGAACACCTTGGTGGGCGGGTACTCCCACAGCGCGGCGTCGGAGGCGAGCAGC
CCGAGGCCCCGGGGCAGGTTCTTGAAGTAGAGCTCGTCGAAGTCCCGCGGCGTCACGATG
TCGTTGAAGATGGAGATGTCCGGGTTGCTCTCGTAGCCGGCGCAGGAGCTCTGCAGCGCC
CGCGCGAACTCCGGGTTCAGCGAGGGGTCGTGCCCGCCGGCGGCGCCGCCTGCGCCCTTG
TAGTTGTACACCCGGTGCGCGAACTCGGAGCAGTGGGAGAAGCCCACGGTGTGGGCGCCC
GCCAGCGCCACCATCTCCTGCGGCGTGATGCCCTTGCGCGCGAACAGGACCGTCATGGCC
CGCGCCGACATGTTGGTGCGCGGGAGGTTGCCCTCCACGTCGCGCGCGTCGGAGCGGCGC
GCGTCGCGGCGGCCGAGGAAGACGGGGAACCGCGGCCCGCCGAGGATCCCCACCAGGTCG
CGCGCCGCCAGCGCGAGGATGTCGGCGCCGGAGACCGAGCCCGGGCGGGCGTACCCCGGC
GCGGACCTGTGCTCGGCCCACCGGCCTCAAGCGCGCCGCCCGAGGGCGGCGGCGTG