Contig Data
morexGenes
Links



Map Locations of contig_87804 (3239 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_87804

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_79952 2 2204 bp MLOC_79952.1 Available Available LOC_Os01g67210.1, FRAME:-1, EVALUE:0.0, 13101.m07288 protein PPR repeat domain containing protein, putative, expressed





CDS Structure of MLOC_79952






Contig Sequence (3239 bp)

>contig_87804 3239 assembly3_WGSMorex_rbca.fasta
AAACGTATGACCGTTGCCCGCCAGGGAGGTTACGATATACAGAGTGGAATCCAGTCGGTA
CGTTTAGTACACTCCGAATGCTCATCACCGACTGGATGATGGGGAATCGTCACCGACTGG
ATGATGGAGAGTCCTTAGTTCAGTCGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGACCCTACCCTAGGACTGTAACCCATC
AGCGCTAGCGGCCGGGAATTAAGCCTGCTCTATGTAGAGGAAGTGCAACGACTGCAGTAA
ACTAAGAAGTGACATGGAATGCAAAACTCGGTAGGTACTAAGCTTGGAAGTGACATGGAA
TGCAAAACTCGGTAGGTACGGTTCTGTGTTCTCAACAGATTACAAATAAAAGAGAAACCG
ATTAAAATACAAAATCGTTGACAGTAAGCTCATCAAATAGACGAACCCTATGTTATAGTC
ATGCAACTATACCATGCTCCAAATTGTGCACAAGAGATAAACAGATTACTGCCCAGGAGA
GTTGTATGTGGATACACTCATACACATCAGTGATAAATCAAGTTCATTCCCAGAAAAGTA
CTCCATTATATAGCAGATCAAATTGGTAAAGACATGTCGTTAAAAACCAGATCAATCAAG
TACTCCCTCCATTCCTTTATACAAGGCCACAAATTCATATTACAGGTACCAAGGCAAAAT
TTAATGACCGGGTTGAAAGTCAAGTTTTCTTTTCGTTAACCGGAATCATTAATACGCTGC
ATGCATGCAACGAATGAGTGAGAAGAAAGTAGCCAACTGTCATTATGAATACATGCATGC
AATTATTAAACAAGTTGCTAGTATGAGGAAACATCATTAATGTTACCTCGATTACTGTTG
GTGGCCTTATATAGATGCAAAATGTATTTTCAATGGTGGCCTTGTATAAGGGAATGGAGG
GAGTATCTTCCCTGAATAAGACACCAATGGCCAACAAGCCTATGAATTACAGGTTAACAA
TAGTAGCAATTGTAACTCCGATATTTTACATGATAACAGCATATAGGCATCTTCTTGTAT
ATCATGCACCAAAGTACAAACAGGTACCTGCTGCTGCATCAACACGTTTTTCTTTTTACT
ACTTCCCTTTTGATTTGTTAGGCACATTCCAAAAGAATCCATTTTTCGGTTTGCAAGGCC
TGATGCTGGGAATAGACAAACATGTATCCTCCATTGAATCGTCATGAAGATTGGATAAAA
AATTGCATGGAAATTCTTGGTTCTACTTCTAAAGAAGCAGAAACTCTAGACCAAAATTAA
ATATGCATCCGTTCAGGTCCAGCATTTATAATACAAATGCAATATTATTTTAGCATCTAA
CAACAAGCAGACAAGTACAAAAGATGGTGTTTTTCATAACCTCACCAGAGATGCAGAGAG
CAAAAAGAGGGTGATTCCGCAAAACTGATTAGTGGCTGTGTCACTTCAAGCGTATCCTAG
AGAAACTATGCTTCTTGGCTGTCTTTTGACGCCTCTTCCATTTCCAACTCCTTGACTGCT
GCTATGAGGCTGCGGGTAATGCCCTTAAGGCATAACCCACTGCCCTCCATTTCCTCAAGG
AGCTTCTCAGCTGTCCTCCAGTCCATAGCCTTCAGACATAACGACTGGATGAGTTTGTTA
TACTCATCCATGTTTGGCTGCAACCCATCCTCCTTCATCTCCTTTAGGCACTCCAGGGCC
TTCTCAAACTCCTCCATCTTGCAGTAACCACGGATTAGAATGTGATAAGTAACCCTGCTT
GGTTTTGGATGGATCTTCTTAGCTTCGCGAAGTAGAGAATGGGCTTCATCAATCATGCCT
CCCTTTGCATAGCCACTCATTATCACACTGTATGTATAAACATCAGGGCGCAGCCCTCGG
CTCTCCATCACTCTTATCAAATCCTTTGCGTCTTCCATTTCTCCCTCTTTAGACAATCCT
GTGATGACAAAGTTGAACACTGCACTACCAGGAGCTGGGCCAAGATTCACCATCCTCATC
AACAGCTTCTTTGCATCATTCACATTCTTCATCCTGCACAAACTATGTATAACAGCAGCA
AAGGACTTGCCCGCATGCTTAAGAGAGTCTCCTTTGTATTCCCCAAGCAGCTCCAGAGCC
GTAGTGATGGTCGCATCATTCTTCGCCAAAGCACCAACAAGGAAGTCCAAGGCTGATGTT
GGAATCTGAACCTTCTTCTCCTTTGCTGCTAGGTATACTGAATGCGCCTCCGTCACCATC
TTCCCCTGGCAAAAGAAGGTCACAATCTCACCAGTCTTCTTCCCATCAGGGAAGCACCCA
GAGCTAATCATCTTCTCGCAAACTCCCCATGCGGCGCCAACCATGGACTTCTTTCCAGCC
GCTTGAATCGCCAGATAATAGCTGTCACCGTCCGGAGTGCAGCCAAACTCACTGAACTTG
TCAAGCACCTCCAGCGCCGCCTTCGATTTCTGAAGCTTCCAGAACATTGCTAGCACTCTG
TTCAACAGTGGGGTGCTCAATGATCCAGGCACACTGCCCATTTCCTTCACCAAATCCCAA
AGCATGTAAGCGTCCATCTTGTCAATCTCGGCCGAATCAGCAACCTTGCTCGCGACGATG
TCAAGATTGGCAAGGCTCTTGACATCAGGGTTGTTCTTCCCAGCAGACTTGAACAAGAGG
AGTAGCTTTTTACCAGAGCAGTTCTCGGCGGAGAGGAGGATGGCGGCTAGGAGCGGCTCG
GTGAAGTCAACGACCATGTCGGCGATGGCGGAGGGGATCTGGTCCTCCGGGGTGGACTGC
ACGACGGCGCGGACGCGGGCGACCTCCTGGTCGCTGGCCTCTGAGTCAGCGGTGTCGGGG
GAGGCGGGGGAGACGAAGATGTCGTTGGCGTCGCCCGCATCCTGCTCCCAGAGCGCGGCC
AGGTTGTCCTCGTCGGCCTCGGTGGGATCAGCCGATCCGGGTTCAACGCCGGGCGCGAAG
GCGAAGGGATCATCCTGGAGGGCATCCGCAGAAGAGGAGGGGGCGTCCGGCAGGGCCTCC
GGGGAGGAGGAGGAGAGGAAGCGGGAGAGAAGGCGTGGTGGCGGGGGCGGGGCTCGGGTC
AAGCTCCGAAGTGAATTTTGCGGCGGCGGTGGCGACCTGGGGACGGATGAGCGGAGTAGG
AGGAGAGCGCGAGCTCGGGAACGCCACATCGTCGTCGACGGCGGCGGCGGCGGCGGCGG