morexGenes - Barley RNA-seq Database

Contig contig_87439
Source Contig contig_87439
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_87439 (6316 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_87439

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_79891	1	576 bp	None	Available	Available	None
MLOC_79890	14	2623 bp	None	Available	Available	None
CDS Structure of MLOC_79891

CDS Structure of MLOC_79890

Contig Sequence (6316 bp)

>contig_87439 6316 assembly3_WGSMorex_rbca.fasta
CTGCTAATACTTGAAATATTCTTTCGCTTTCCCTTGTGCGAACCAACAAATTTGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTATACTTGTGGGTTATCAACGCCCATTT
TGCATCATGTGTTGTTACTCTTATTTTTAGTGTTTTTATACATTATACCACTTTGTGGAG
TAATTCTAATNNNNNNNNNNNNNNNNNNNNNNNNGTTTACATCAAGAGGGAGAATGCCAG
CACATGGAAGTCTGGACATGAAAAAGCTACGTCCGAGATACCTATTCTGCACATCTCCAA
ATGGGTTGAAACTTCATGGAGATTTATTTTAGAATAAATAAAAAATACTGGAGGAAATAA
GTACCAGAGTGGGCTACGAGGTGCCCATTAGGAAATAGGGTGCGCCAGCCCCCCTAGCGC
GGCCTGGTGGGTACACTACAGGAATCGAGCATTTTGCCGTCACGACCCTACAGACGGCAA
AAAAATTGCCGTCAGCCCATGATGACAAATAATGCGGGCATCCGCCATGCCCGCAAAGGA
TAGTATTGTCGTCAACATACAGGAGAGCACACGACAAATCTTTTGCCATTAGTGAAATTA
TTTTGCCGTCAACTGGTTTGCTAGACGGCAAAAAAATAACAGAAGAGGAGCGGACTGACC
GACGGACGACGTTAATCATTTTTGCCGTCAGCTTTATGATACCCCAGACGGCAAAACTAC
CAGTTGTTTGCCGTCTTCAATAAAGTTCAAGACGGCAAACCACCTGGGATCTTTGTCCTC
TGTCAATTCTGTACAAGACAACAAACCACATCATATCTTTGTCGTGTGTTGATGTTGTAC
AAGACGACAAATTAATAGGTGCGCCACATGTTTTTTTGCTGTCATAAACATGACGACAAA
GGGGTTGCTAAATAGACAATATAACAGCATAAATAGACAATAAAAACAGCATAAATAGAC
AATATAACAGCAGAAATAGACAATATAACAATATAGTCCATAACACATCCATACATATAT
ACATATAGCACACACCATAACACATCAATATAACAAGTGTAAAAAATAAGATCACAAAGG
TTGGCATCCACGTTACGCAAAACTCACATGAGCCTAGCAACAATACGACCTAACCTACTG
CATGGATATTGTAGTACATACCCCAAATCCACAAGCACCCTACATAATGATTCGCGATGT
CGTCGGTGATGCAACAACCACAACCAAAACAAAAAAGGCAAGGGAGGCTGGTGGTCCAGG
TTGTTGTCTGCGCGCCGCCTCTGTTGGTCATGCCGTAAGCATCATTACCATTGCCTCCCG
CACCCCGCCATCATCAGGCTTATTTGTGGCTGTTGCTCGTCCTCCTACTCCATGTCTCCA
TCTACATGGACAAGAGCAAGTTAGTTGAATGTCATGCACATGATAAAACTGCAAGGCATA
TATATTTATGTACATAAACTGCATGGTCGAGTTTCATTCAAAACATATGTGATGAATTGA
TGACTGAAATCTGTACTGTACCGATAGGTGTTTATGCACCAATATGTACATGTAAACACT
TCACGAGATATTTCCTTCCAAACATTGTAAGGCAAAGATAGATAGTGGTACTACACATAT
TGAAGGTAAACTGTATTGACTTGAAAGCAATAAATTGACTGTATATGTTTGCCAACATAA
AATTCCACTCTCAACTTTTGACGCACATTTACATGTTCCGAGATACCGAATGCAACTAGT
TTACAGAAGAGATTATTTCCTATGAAATGCACACCTTACAATTAAATAAAATCATTGTTG
AGCAACAGTTAGACATAGTATCTCCTGAGTTGTAACAATCCTAGATTGATATTATAGCTT
TTCAACACATGTTAAATAAACATAGCAGATTACAACACTTGGAAAGCATAGATATTTCTA
TTGATAAATAGATAGGAGTTGAGAAAGAAGCACCTTTGAGTGGTACACTCATTGCTTGTA
TAATTTTATCTGATGGATTGTGCAACAAGATCAACCATTTCCTTTAGAATCCTCTAAATA
GAGTATGCAACACCTCCTACTNNNNGTAATGTAAAAATGAGATGCAACTAAAGAGCAGAT
ACACAAGTAATGTAAGAAAATTAAAAACAAAATTAGCACATGTGTGCGCCCATCAAAAGC
ACATTCCAATATGTACAGACTTGTAATATGTAACACAGCTCGTTCACATTGATTTGTACG
GCTTCGGTACAGCCGTGTCATTGAATATCAAGGAAATAGTGAACTATTGCACAAAGATAT
GATGCACTAGTGATCATATTTGTTAATAAGTTCACTCTTGCTGATGCTCAAGTCGTACGC
ATGAGATAACATGGCAAGGAGGCAACGGGAACATTCAGTTGTGGACCATGAGAAACAATA
GTACAAAGGAGAGTTCACTTTTTTTTGCTTAAGTATAGGATAAATTTAATAGCTTGTTCA
ATGGCATCAACCTAAAAGTGCTACCAAATCTATGGTGAAATGAATAGAAAACGGAGCGCT
TTCTTAGAAAGCAAGTTACCAATTTTTATATGTTGTAAAGATAAAAGAGGAACGCTTTAT
TAGAAAAATGAACAGACCCAAAAACAAGCTTTGCACAACCAACTCCAGGTGCACCTGGAG
CGTAACAAGTTCATTGGGCCTGTAATGACCATGATTTCCATCGAGTTTTTTATCTTCTAT
AGATATGCTCTCCTGTAATAAAATTGAAAGAACCAAGTCAATTTCTCACTAATAATCACA
AGACAAAGATGCTGGGAAACTAATCCTTACTGTTATCGGATCAAAAATAGTACTCCCTCC
ATAAAGAAATATAAGAACGTTTAGATCAATAGAGGGAGTAGTTTCTAACATAAATATTAG
TGTCAACTGAACTCTCACAATTAAGGCACCTCCTCGGTAAGCTCAATACCAAAGGTCAAA
AGTAGTACTTGTGAACTGATTCTTGCAAGTTCAAACAGACCCTTGATTGTATCCAGACCA
ATAGATAATACAATGCTCACAGCAAGAATAGTTACCGATTGGCATGGACAGAGTGCCATG
AAATCAAACTGAATCAGAAGAATTTACCCACTCCAGCTCTAGGTCAAGGTTTGATTCCTT
TCTGGTAAGGGGAATGGAGAAGGGGGAAAGAGGTGTTACCTATGGGAGGATGGTCGCTGG
GGTGGCGTTCGTGCATGGGAACCAGGCCACATATGAGCCACGCGGCAGAGGAAATGAGGA
GGAGATGCACCGATGACACGAAGCGGCTAGGGTTTGCCACAGAGTCCATTGGGCCACTAT
GGCCTTCGTTGTCGACTCGCCGCCGTTGTCATCGTAGACTGGAGCAAGCTCCAATGATGT
CATTCATGTTGAACATGCCCGAGCGAAATATGTTGCTCCTTCGAACAAATAGAATTCCAC
GATGCACCATCTAGGTCGAGTTGTCCTAATATTATTGGCAGTCATTAATAATACTATACA
ACTGCCGTTACAAGAACAAGAATTTTCTATTACAAAATCTACTACTAGCAAGTAACGAGC
ATCTTCTACAAGCATAATAATGGCATGTCTTGCAGAAAAATAGCCCAACTTTCACAAATG
AGATAGGTGCTAATATGATTTTTTGCTATTCATGAATGTCGTCATTTGCGTACATCAAAA
GGAAAGCAGTAGATTCACATGAACTACATTGTTGAATGTGAAAGACAAGAATCACTCGTT
ATATATAACAACAAATTTCTCACACGAAGTTTGCACGCAACTAGTGATTTGTTTGAAGTT
CGATTACCACAAACTGGATGTTAATTATATATAGGATTACACTAAAGAAAAATAGGAAAT
CAATTACAAGTTGACTATTTGAGGGGCCTCATTGGTGTTTTATATTTTGAAGGGATGGGC
AAACATGATAATAGTTCCCTCGTGATGAGTACTTTTCTATTAACAACCATCACCATTTAT
AGCATACCCAAGACTGAACCTGGAGCATTTGGTACATCTCACTCATATCTAGCGAAGTTA
GCAATAGGTATTATATAACAACCTACAAGCTCAACAATTAAGACATGTTTATATCTTGCA
AAAGAAACATGTGATGTTTTATCGGTCAAGATAAAATTAAGCAGTCCAAGTAAACATGCT
CAAACAATAATTATCTGGAAAAAAATATTTGTCCCTACTACATGTAAATCCAATACCCAT
TCAATACTTGGCATCACTAAATGAGAAATCTAAATGATGAAATTAGTAATCTCTTCTCCT
ACTTGAATGAGCTCAACAAATATGCCACCATGCACTCCGCATCATAAACACTAGAAATCA
ACATGGCCATCACATAATTTCTCTAGCAATAGGGCTCCATGGCCACGGACCCGCGCAGAG
AACGAGCATGAGAGTGAGCGAAGCAGAGTAGAGGGACGGTTGGTTGCTTACCAGATATGC
CCGAGAGGAAGAAGAACGGTCGGAGTTGTTGGAGTGGAAGAAGAATCACGAGGTGGCTCT
GTCCTGCACCACCACATGCGCGCATTAGAAAGTGCATCAGGGAACCAAGACATGATCGCT
TATGCAATAGGGCTACCAAACCAAACAAAACGGGGGAGGGGGAGCAAAACATTGACCTGC
TGGTAATATAACATATACACCCTCTTTACACTAGTAGAAGACGTTTTGTACAGAGCTAAT
AACATATCGCACACTTGACTATTTCAGCAAAAACATGAGCTGCGCCTTCAGACCTGGTGC
TACTACAAGTGTTGATTCCTGAATTTGTACCTGAACACAAGTTCAGTTCATATACACAAA
TATAATATGTATGTTTGTGCATGACCATGCAGAACTGAACTGAATAATGTGGACGGTGAC
ATAGATCGGTTGACATGGAACAATATACTATGCTGGTAGGTTTTCAATCACGTGTCTAGA
GGAGAATTCAAAGTTCCGTAATTGCACATTCTCGGCAGTGCTTTACCTCCACTAATAATG
CATATTGCACACTTGACTTTTTCTAGCTAAACATGAGGTGCACCTTCAGACCTGTTGCTA
CAAGTGTTGAGTCTGAATCATAGGATGAGCAGAGAGAGAGATGACAGACCCGAGCTGTTG
CTGATTTGATGGACCTCGACGATGGTTGAATCATAGATTTTCTTTTTAAGAAAGCGTTCC
TATTTTCTCTAGTCAGACCCAAGTCACCATAGAAAAATGAACAAACCCAAATCTATTCAA
CATGCTGTAAAGCAATCTACTCTAAAATCAGAGAGCATGCAACATAAAAAAGGATTAAAC
AAGAAACATGTCGACCTCCATAGACATGCAGATCGCCCCACCTCCCTTGCCTTCTTCTCG
TCTTTCTCCTCCTTCTACACCTTCTCCTCCTTCCTCATCCGCTTTTGCTCATTTTCTCTG
GTCAGGGAATGGATCAAATTGATACCCCTAAAAACAAACCGGTAAGATCAGAAATTGTAC
AAGGGAAAAATGAATTTTTCTTCCCAAATCAAGCGACATAGAAGACCGCCGGTGGCGGAG
ACGAGGACGCACCCCAAACCCTAACCATGGATGGATTGTGTGCGAGCGTTGGAGGCATGG
AGGAACGGAACTGGCCGGAGAGATCAACGCAGCATGACGAGGTGAGCTCGGCAGCATCCT
GCGCACCGGCCATGGCCGCTGGACCTCGCCACAGGCACACAGGTGGCGGAGACGAGGTCG
CACCCCAACCCTAACTGCGGGGGGTTGATTGGGCGCGAGCATTACATGCAAGGATGGACG
GATCTGGGTGGAGGGATCAACACAACATTGCTACGTGAGCTCAGTAGCCTCCCGCGCGTC
GGCCATGGCCGCCAGAGCTCACCGATAAGGTCGTCGGCGGCGGTGGCTAACCATAGGTCA
TGGGAGGGGGGAGAGGAGATGTGGCTGAGGGGAGAGTGTCTTTGACGCGGCCATAGCCCA
TGTTTTCCGTCAACGGCTAGGAAAGGAGACGACAAACCGTTATTTTTGCCATCAGCGTAC
CTAAATCATGACGGCAAAGAAGCCTTTGCCGTCATGCCTCTTTTGTCGTTTGTCTGTTGG
AATCTCTGCTGAGAGTTTTGTTTTGCCATTAGTTGCTAGACGACAAAAAGACCTTTGCCG
TCTTCCCCGATAAAAGCTGACGGCAAAGAGGATTCATGTTAGCAAAATAGTTGATTCCTA
TAGTGGTAGTGGGCCCCCTGGCCCACCTCTGGTGACCATCTGCTGGTATAAATTCTCTTT
TGACCAAAAAATTAGGAGAAGACTTTCGAGATGAAGCACCGCCATCTCGAGACGGAACCT
GGGCAGGAGCACTTTT