Map Locations of contig_87438 (3808 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_87438

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_79889 5 1304 bp MLOC_79889.1 Available Available LOC_Os11g34190.1, FRAME:+2, EVALUE:3e-53, 13111.m03311 protein expressed protein





CDS Structure of MLOC_79889






Contig Sequence (3808 bp)

>contig_87438 3808 assembly3_WGSMorex_rbca.fasta
ATGAAGCTTAACATGGTATCGGAGCCTAAGGTCTTGAGTTCAAGTCCTGTCTTTCGCAGT
TTATTCAAAAATTGCTGCTGCCCCCTATGTGTCCACGTATAGGCCTCTTGAGCCATACCT
CTGAGTCTGTCCACATGTTCACTTATCGCGTCACATGTGAGAGGGGGTGTTACAATATAT
GTGGATTGCATTAGCTCTTTTCATTTGGTTGCGTTGGCTAGTGCATGAAGCTTAACATGG
TATCAGAGCCTAAGGTCTTGAGTTCAAGTCTGGCTTTCGCAGTTTATTCAAAATTGCTGC
TGCCCCCTATGTGCCCGTATAGTCCTCTTGAACCATACCTCTGAGTCTGTCCACATGTTG
ACTTTCCGCGTCACATGTGAGAGGGGGTGTTACAATATATGTGGATTGCATTAACTCTTT
CCATCAGTTCGGATTTCTGGTTGCGTGGCTAGTGCATGAAGCTTAACAAGAATCATAGGA
GAGGAAAACCTGGAGGCGGGGAAGCAAACGTACCAACTCCCGTTTAATAGTAAAAATTGA
TTGCATTATACAATACTCATCTTAAAATGAATTATTAGGTACCGACTATTAATGTAGGCA
AAATATTATATTGAGTTTAATTATACATATGTCGTGTTCTAATTATGCTTCAGAATGTTT
TCATACTTTCTAGGCATGTCTATTTTATCTTGCCAAAGGACTGTAGGTCTGTATTTTACT
TGATTTTGGTTTGAATGCTGGAGTCTTATTAAATCAAAATGAGAGCATTAGTGATTTTTT
ACAGAACATTCCAACATCTATTTTACCTGTTTGTAGCATGTTTGATTATTCAGCATGTAT
TCACAAAATGAAGCAATGCAGAACTCTTACTCTACTAGGAGTTCGGCGGACTTTAGAAGA
AGACCTCAAACTTGAGAAGAAAGCTTTGGATGCTTTTAAGGGTTATATTACCAAAGAGTT
AGATAGAGTAAGTTTTAAATGTGCATTAGAATCGTGTCTATTTGCTTAGCTCATGTGGTG
TGATGCTTGAATCAGCTTTAGCTTAGAAAGACTTTTTGACTGTGTTTCTGTTATTTTTCT
GTATGACAGGTTTTGCAAGAACCTGAAAATGGAATGGCGGATCATAGTAAACAGGAGGCT
TGTAAGGATGCTGGTCAGAAAACAAGTAAAGGCTCTAAAAGAGCTCGTCAAGACTCTGAT
ACCTTTGAACTAAATAATAGTCATAGTGAGAGGGAAGACAGTGATGAGGATATAAGGCCA
AAAAAGAGGGGGCCTAAAAAAGGCAAATCTATAAAGCAGCAGAAAAAAGTGACGGCAGGG
AAAAAATTGTCAACTCTCAAGGTTGAAAAGGTTGCAAAAAGAGACTTAGATAAAAGTGAT
AAAGATCAAGGTCGAAATTCTGCAGAAGATAATCCCCTTTCATCTGCTGTGGATAATAAG
AAGGTTTGTATTTGTTTTTTTAGGTCCGGTTCTGGAATACTTGTTCTCTCAATATATTAG
CTCTACCATTTTTATAGTTTGATTTGCACAAAAAATAACAGGCAGCTCCAGCCCATGGCA
AACGAGTAGAACGGCTTAAGTCAGTTATAAAATCTTGTGGAATGAGGTAATCCTTACTTT
GGATACTTGAATGCAATAATGAATTTTACTAATGTGTTTTCTTAAACTAGTGTGCCACCT
TCTGTGTATCGGAGGGCAAAGCAGGCCCCGGAGAGCAAGCGCGAGGCTTGTTTGATAAAG
GAGTTGGAGCATATACTTGAAAAGGAAGGATTGTCTTCACACCCTTCTGAGAAAGGTCTA
GTTTGTTGCTGAACTACTTATAATTATATGAAAGCTTTGCTAGTCGTTTCATTTTCTAAA
GTTTATATGGGTAGCATTAGGATGTTAGGTAATCAAATTATTCTTTGTGGAGAACTTCCC
TTGGGTGCAGGATCCAGCGGTGGGTCCACAAGGTTGTGAATCCCACCTGCCCACCCGATC
CGAGTCTCACTTCTACCTTGATTTAGAAAGTGCGGTATTGAGTCTTGTACCTTCCATCTT
AAAACAGAAAAAGGAAAAATTATCGTGTGTTATGCGTGGAAGCTTGCTATCCATGTGCCG
ATCTTATGGGTTTCACCTCTAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTT
GTTGTTGTTGTTGTTGTTCGTCAAAACTATCCATTATAGAAGGTGTTTGTTCCCAATAAT
AATATATACTGTGTGACTGAATTGTGATGGGATAATCTCGCTCCTGAACTCATTTACCTT
GGAGAACTCTCCTTGGGTGCAGGATCAAGCGGTGGGTGCACAAGGTCATGAGCCCACCCA
CACAGATCCGAGTCTCACTTCTGCCTTGATTAGCAAAGCGTTCATCTGTTGCAAGCCACT
GTTCAAAAAATCGGCCGATTCAGCGATTTATCGGCCGATTAATCGCTACTCGGGGTGTGG
CCGCTAGGATAAGGCCGTATCTTCAACATTAATCTTTTGGGCCGATTTATCGGCCTGACA
ACCAATTTATCGCGAATATTCCGATTAATCGCTATGTGCCCCCACTACAGAAATCTCAAA
ATGGGCCGTCCTTCCCCCGCAAAGCACAGAATGTTGCTGCTCGATAGGGTTCGAGATTCT
ATCCACACCACCGCAGTATTCCCCTTGCCCATCCACACTCTCGCATCCATATCCCCGAGC
CACACGCCGCCGCCGCCGCCGCCACCCTGCTTGCCTCCGGAGGCCGGGGTTAGCACAACC
AGAGCTGTCCGTCCTCTGGATATTCTCCTCCTCTTCCCCACCAGCCAGTCACCTGCGCCC
TTGCCATATCGCTGCCGCCCTTGCCATCTTCGTCAGGAGCAAGATGCCCGAAGCTTGGAG
CATCTCGCCGCCGCCGCCACCACTCCCGCCCTTCCTCCAGCAGCAGCAGTGAACCGGGAC
CGTGCCACCTTCCCTTCTTCCCGGTCCCTTCCTCCTGACGCCCGGCGGTCGGAGCATCTT
GCTGCCACCACCACTTCCGCCCTTCGTCCTGACGCATGATAGTTGGAGCCTCTCACTGCT
GCCACTATCGTCCCTTCCTTCAGGTCCCTTCCTCCTGATGCTCGACGAACAACGACCGGA
GCAGCTCCCCGCCACCAGCACTTCCTACAGCAGCACACCATCCCTGCCACTCCCTCCTCC
AGCAGCAGTCCGGCCAAAGATTGACCTGCTGCTGTCCCTGCTTCTTCAGTGTAATGCAGG
ACATTTTTTCCTGTTTACTGTTTTACATTCTTAGATAATTTGATGAATAGATGTTGGTAT
TGTAGATTTATAGATGTTGCCATGCTAGTATTGTAGATTTGTAGATGCTGCCATGCTGGT
ATTGTCAATTTGTGGATGTTGCCATGCTGATATTGTATATTTGTAGATGAAATCTGATGA
ATAGATGTTGGTGCCTTTTTATTTGAGCTTGCTGTGTGCTTTTTCCACATTGCTAATAAA
TTAATAAATGTTGTGGCCTTGTGTTTTTTGTAGATGTCTGTTTCTGCTACTTCAGAGGTT
GCAAGTTTGAAACTTAAGAGAAACTACGTGCTCATGTATCTGAGAAACAATTTAGTATAC
TTTATACCACTCGAATATCGCATCAGTCAGATGCTTTATATTCTTGAATAGTGTTAGGAA
TAAGCAACTTGTATNNNNNNNNNNNNNNNNNNNGATATATATACATGTACAGGTGTGAAA
CATATGCAGGATACCCTTTATACAACGGGATAAATACAAAGGGGTACATGACTTATATTA
TAACTCTAACACCCCCCTCAAACTCATG