Map Locations of contig_87365 (5768 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_87365

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_79876 2 1830 bp MLOC_79876.2 Available Available LOC_Os12g32940.1, FRAME:-1, EVALUE:0.0, 13112.m03359 protein transporter family protein, putative, expressed





CDS Structure of MLOC_79876






Contig Sequence (5768 bp)

>contig_87365 5768 assembly3_WGSMorex_rbca.fasta
TATACGATGCACCTGCAACTAGCAACGCTATCAACAAGGTTAAGCAAGCGGTAACNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTG
ATATTTAACATGTGGTAGGCCACTAGACATAAACGATAGAAGCGGTAAANNNNNNNNNNN
AATGATAGTAATGGTATCTGGGGATTTGCATGCAGATTTAATACATATAAAGAAACGGGT
AAGTGACCTTGAATTTAATCTTCAATCCAGATTTTGTTGACATGTTCATCCGCAATCGGG
ATTAGTACCGCTATGAAAGAAAGACAAATAACGAATTATTTATTAAAACTGCATCCTACA
TAATTTTTTATTAATTGTTTAACACGTAAAATAACATATATTCAAATTCTACATATTTTT
TAATCAAATTTCATATATAATGTTTTAAATTTGAAGTTACAGATTAGAAAATATGATTAT
TTCAAAAATATTTAATATGTACTGCGGGTTTAATGTTAAAAACATCAGTTTTTTTAATAA
AATAGCAAAACGGATTAAAAATACATATATTTTTTATTAATAGGTATAGATCGTAATCTT
TCCCTCCTTCCATCCAAAGAACGCCGGAGATAAAGAGCCAATGGAAATGGAGATATATAT
TGTGAGAATCCAATTTTTGCCGACCCAGACACCACCTTTAACCCGGTGGGTGCATGTTCT
TTCAAAAGTCGAACATGGTGGGCTATAGCATCGATAGGGCTAATTATTAATGCCAACGGA
CTGGTGGACATCTCAATCCACACAAGTATGTCATGTCAAGTCTAGTTTGAAAAGAGCAAG
TAGGCACGGTAAAGCATCAGCACACCAGCGATTTGAAGCCACAAACACGTCCTCTGCCCA
TGCCGATGCGGCACGGCCGCTCAGCAGTTGGGTGCATGCATGCATGCATGTACTCCCTCC
GTTTCTAAATATAAGTTTTTTTTAGACATTTTAATAAGAAACTACATACGGATGTATATA
GACATATTTTAGTGTGTAGGTTCACTCATTTTGCTCTGTATGTAGTCCCCTGTTAAAATG
TCTAAAAAGACTTATATTTAGGAACGGGGGAGTATATGGGAATCAAATCCCAGTCTTCTT
ATGCATGCAGGGACGGACGGACGGTTTATGGAGCATGTGTCTATCCATGAGCGGCGAGAC
GCCGACGTCGCCGGGGAAACAAGGGGCGACCGACACGTGCACCTACGTACCCGGGCTCAT
GCCATCAGGACGATTTTGCACGCAGCAAGGTATACCCTCAATCCGTCCGTCGATCGCCTG
GGTGCGACCGTGTCGCGCTCGCCTTTGCATCTCGCATCTCCCCTTGCATGCCCTTTCCGG
AGGCCGAGACGACCCAGCACTTAGGCTAGCCTGAGGCAGGGATGAGCTCAGCGGCGTGAT
GTCTCCCGGATTCACCGGGTCGACGTGTCGTCCCTCGCGAGCTTGGGTAATGGTTACGGC
CCGCCACGCTGGCGCTTCGCGTGGCCGCGGGGCTGGTTCCTCCATCGTCACGGCGGGGGA
GATGCGTGCTGCTGTCCACGTAGGGAAAGCGGCGCCACTCACGATCGGCGGCATGTCGGA
CGGCATGGTTTCCGAGAGCGATGGGAGATTACTACGTACGGCAGGTGCCGACAACCTTGG
AATCAGGCTGGCTCGACCCGGTGCCGCTTTGGTGTGGCCCATACTCGAATCTGATTGGGG
GTTGCATTGAGCGGGTGTTGTTGAAAGCTGTAATCATATGGTATTGTACGAGGAGGCGGA
CCTGACCGGCAGCAGCCTGGAGTGCGGCGACGGGGACGACTACGGCGGGACACGAGCATC
GTGTCGGACGGGTTCATGTCGTTCCGCTTTAATTACCTAAAAGACAGGGTTTTTAAAAAA
AACGACGGTGGTGGGTTTTCCGACGGAAGCAATAGCCTATTTATAAATAGGTAAAGATAC
AATACGGATTCTGTTCTACCACGATCAGCCCGTAAAAAATGTTTTTTCAATATATAAATG
CCTGATACGGATCCGCGATATAAGGGTCTGTTAGAGTTCCTCTTAAGACCTAATCATTTT
CTCTCAGATATTGTGAGGAAAGAATCAATTTTTAGGAAAAGAAAGAATCGTTTTAATAAT
GTTGTATAGCGTTTACCGTTTGATCACAAATTCACGATCAAAATCCAGAGTATGAAATAT
CTGTGGCCCTATTTCCAATCACAAGTAGCTAATCAGGAGTACGAAATATCAATGTGAGGA
CGGGCTGGTGTTTTGATCACTTTGTCCGGAAGAGCTGCTCCATGTCCTCGAGGTTCCGGC
CCCTAGTCTCCGGCAGGAAGGTATAGATGAAGGCGAACGAGGCAGCCGCGACTGCGGCGT
AAAGGTAAAATGTGCCGGCCATGGTGATAGCCCCATAGAGCGAGATGAAGGTCATGGTGA
CGATGCCGCTCATGACGCGGTTCATGGCGGTGCCGAGCCCGGCGCCCTGTCCGCGCAGCC
GCAGAGGTAAGATCTCCGAGCTGTACACCCAGGCCAGAGGCCCGAGCCCGACGGAGAAGG
TACAGACGAACGCCACCACAGCCGCCACAGCAACGGCGGCCACCGCCGCGTCGTCCTTGG
CGCCGGCGAAAGCAGCGAACACAGATCCCAGCACGAGCAGCGACGCCGTCATGCCGCCGG
TGCTCACCAGGAGCAGAGGGCGCCGGCCGACACGGTCGGCGAGCGCCATGGCGATCAGGA
TTGAGCCGGCCTTGGCCACGCCGAAGAGGACGTTGAGGCCCAGGAGGAGGTTGTTGGACG
TGACGCCGGCCATGGCGAGCACGCGCGGGCCGTAGAGTACCACCGAGTCGATGCCCGACG
CCTGCTGGAAGAACTGCAGCGCCAGAACTGTGGCCAGCACGCGCCTGACGCCGGCCTTGG
TCGTCACCTCATTCCACGTCCCGCCGGCACCGTTGCTGGCGCCGGCGACGACAACCTCCT
CGATCTCCAGCAGACGCTGCTCGGCCTCGGCGAGCGTGTCCGACGTCCTGTCGAGCACGG
CTTTCGCCTCGTCCAGCCGGCCCTTCATCGCCAGCCACCGCGGCGACTCCGGCATGGTGA
GCACGCCAGCCGCCAGAAACACGGTAGGCACAACCCCCACCGCGAACATCAGCCGCCACG
ACAGGTGCGCTGGCAACGCCGAGAACGCGAAGTTTGACACGTAGCTCAGCATCACCCCGG
TGTTGATAAAAATCTTTACAAAAGAAAGCAACACAATTGTGAGACAACAGTACAACACGG
ACGCATTTATTACGAGTTTGCGACTACACGAAGGGGAAAACTCTGCACGGCTGACCTCGG
GAAGGGAGCTGAGAAGGCCGCGGGAGGAGGCCGGCGCGATCTCGGCAGCGTAGACGGGCG
CGATTACGAGCGCGTAACCCACCCCAATTCCAGCGACGAACCGCCCCGCCATGAGCGCCG
TGTACCCGCCCGCGAGCGTCATGATAAGCGAGCCAACGAGGAAGAAGCCGTTGGTCAGCA
CAATGGTGAGGCGGCGACCGAGGCGGTCGGAGGTCCAGCCGGCGAGCAGCGCGCCGACCA
GCGAGAAGATGCTGATGGCACCGGAGAGCAGCTCGATCTGCGTGTCGCTCACCCCGAGGT
CTTCCGCCATGAAGATCTGCGCCCCGCTCATCACCGCCACGTCTGCATGCGCATTATTCT
CAGAGTATGCTCGCGGTCGGAAGTAGAGTAGTAATTGCAACTGTGTACTACGTGTGAACT
CACTGTAGCCCGTGAGGACGGAGGTCATGGAGGCGAGCACGGCGCAGAAGAAGGGGAACC
TGTTGCGCCGCGGCGACGAAGACGCGGCGCCATCGGGCTTCGAGGCGGCTAGCAGCGGAG
CCTCCGACTCCGAGTCCGGCCGGTGCTGCTGCTCCATGGCTAGCTACCCACCGTAACTAG
CTACTGCCCGTCCCTGGTTTTCCGGTGTGTCTCGCACGGAAATTTCAGTTTAGTCATATT
GACTGGATCGACCGGTGGGCAAGTCAAGTGGGCTGAGAGTGACAAGGACGTGTGGCTGTC
TGGCTGGCCTTGGGTTCTTGCTACCAACCACATGGTCCAGGAGAAAAATTGTGGATTATA
TCATAAAAGAAGAGGAAGAAGAAAATATCGATTTCTTAAGGTCCAGTAATTTGAAATTGT
GGACGGCTGTACTGTCTCAATGGAGCGAAAACTATCACCTTATTACATCGCTGAGCATGG
TTAATGGCGTCGTATTTAGTGAATCCGTCATAGTTCCGTGTAGCCGTCGACTCCTCAGCC
GGCAGATCTGACTGACGAATGAAATCAAAATCAAAATAATTTTGCAGAAATACGTCCGCA
GCCGCTCCTAGTCCAACCTGCTAATTTGCTAAAGAGTCAATTACACCATAAGTGTTTGTA
TTTGTCAAGAAAATTAATTTGGTGCTAAAACTTGCAATATATATGGAATCGATGATAGAA
CTTAGTTTGTACGTGCATCTACGTACTAAGGCTGGCCATAGTGAGGGTATCATAGCTAGT
ATCATAGTCTTGGGATTAACAAACATGCTGATGTGACAAGTAATTAAAAAAGAGAGATAG
AGTTAGAGTAACATAGATAGATACCGTATCATGTTAAATGCTATGCTATTATGTGTCATG
CATGTTAATAAATGAGATCACCTATGATACTAGTTTATGATACTATGCACTATAAAGATA
ATATCATACAATAGTATCATATAATAGTATCAGATGCATGATACTACTATATGTTATTCC
CCACTATGAGCAGCCTAATTGATGAGACAGGTCAATATGATATGAGATCCAATGTCAATG
ACAGAAAAAGCAGAAATGGACGTGCGACCTAATTCTTTGCGAAAAACAATGTAATGATTG
AGATGGGCCTTAAATGAACTCCAATGACCGCTGCTTCTATTTATCATGATTGTGTTTTTA
ATTCATATATATCATTCTAATTCATATTACTATTGAAATTACATGTTCTTTTTAAAATAA
TGCTTATATATTTTAGAATTACATTAACAGTAGTTTAAGTACTAATATTCCTTGTAAAGT
AAGTACATGAATGTTTACCTTAACACTTTTGCTTCCGTACATCCCTCCCTCCACACAAAA
ATGTAGAAGGAAAAACGTATACCCACCTCCCTCCTGTCGGCCCTTCTTGGACGGGGCCCG
TCGCGAGGCTTACCTACGGCGGCAGCTGGAGCAGGCGGCGGCCTTCTCCCAATCTGTTCG
TTGGTACCCCTCGCGTAGCGACGGCAGCCGCTCCCCTCCCGAGGCGATTGACGCTCGCCC
GGCCGCGGCCGCTCCTCGCCCTGGGATAGGTTTCGCTCCCCGGCTCGGGACTCTCGTCGG
TCCCCCGCCCGCGCTGACCGGCCGGCTCGACGCTCACCATCCCCTGACCGCCGCCGCGGC
CGGTCCCTCTAGCCGGCCAATCAATGGCCGTCTGTCGGTGCCTCTCCCATGCGTCGTTAT
GTGACGCCACGTTCCCAGCCGCAAATCCCAACTCCCAAGGGCCCTGCAATGGGCGTGGTC
GTCACGGGACAAAGCAGAAGAAGCGCAAGGGCCCTTTCCACAACCCTGCCCTTGCCACCC
CGGTGCTCGAGAGCTCTACCACGACCACGGGAGATGGCCCCTGTTGCTTCAACTGCGGCC
TCCCCGGACATTTCCAGGTGGCTTGTCCTAACCCGCTGTAACGTCCAAGATGCAATCCTA
TCCTTATT