Map Locations of contig_86225 (10163 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_86225

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_79660 5 6042 bp MLOC_79660.1 Available Available LOC_Os03g48490.1, FRAME:-3, EVALUE:0.0, 13103.m05233 protein centromere protein, putative, expressed





CDS Structure of MLOC_79660






Contig Sequence (10163 bp)

>contig_86225 10163 assembly3_WGSMorex_rbca.fasta
ATTATATAAACCGATGTAAACAACTCTTTTGGAATTAAACAATATAGTCATAACTCTATT
GTACGGCTCCCAGAGGAGCCGGAACCCTAGCTGCGTCGTCGCCTCCCTCTCGCGCGCAAC
GGCGCCTCAGCGCCGGCCGCCACGCGCCGGTCCTCGCCAACTCCACTTCATCCCCTACAA
CCTCCGCCCTAGACTAGACCCGGTCCGGTAGTAGAACCCTAGCGGTTCCTACCAACATCA
TATGAGAAACACAAAAGGATTGTCATCATATCCAGGTTCACCTACATAGTCCAAGTCCAT
CATAATATGGACAGCCCAAAAGTGACCAAAGCTTCACATACATGAGTCCACACAATATGA
CATGAGCAGCAACAGGAGTGACTTTAACCCAAAGAAATGAAATTTTGTTCACAAGCTAAG
CCTTCTTTTACTTCTTGTGCCCATTGCAGGGTTGGCTGGGTTAGTCTTTTTTGCTTCTAG
TGCTGGTTGCAGGGTTGTCAAATGGCACAATATCACAACTTCCATCCTTTTTAGCAAGCT
CCACCTTCTTCCCCTTCCCTGATCTACACTTGTACATGTATGACACCAATAATATGAGAG
CAAATAACGACATGAACTACACATTGTATGTGATATTAATATTCAGAATTAGCAAAGGTC
ACCTTTTACACCCTTTTCCATTTTTCTTATTTGTAGTCTCCAAAGTTTGGCTATGTTTTC
CCTTCTTCTTGGTTGTAATTTCTAAGCTTTGGCTATGAATTTGATGAATACACACAAATC
AAACTCAGTTTTCATTTGGCACTAATCAAACTCAGTTTTCATTTGCAACAAGCATAGGTG
TAGTATTGTTAACCTTGGTGGAAAATACATAGTGGCTGCGGGTGCTTCATCACGTCTTGG
CACAATGGATGACTCGGCTGATTTGGTAGTCTTCCTCCTCTTCTTTGGTGATTCTCTACA
CGAGCAATAAGAAAGTAGTTCACATGCATAGTTGATTACAAAATAGTAATGCAAGAAAGT
AGTTAATATGCAATAAGAAAGTAGAATGCATAGCTGGTTACCTCACATTCATCAAAGCAG
CGATGTCATCTTTGTTCCCTTTCTTGCAATTGTTCCAATGGTGCCCGTATTCCTTACAAA
TAGGGCATAAGTGCCGCCACTTTTCCTCTTTTTCTCACCACAACCCTTATACCTCTCTGT
TTTGGGCCGACAAGCAACGGCTTTTAGCAAGGCCGCTGAAGCCGATCGCAAAGCCGCCCC
CACGAGCTGAAGCCGTGCCCTGAACGGACCCCTCCGGAGCCGGGACCTGGCCGGACCCAT
CTATCGCCCGGTCGTCGTCAGTAGTCATGGCTGCACCGACGCTTGGCCTGTCCACAGCTG
CGCCATCTCCATCTGCGGCACCGCCGCCATCCATCCTTATCGCCAACCCCGCCACTACAC
GAGGAGCTCGAGCCGCCATCGCTAGGGTTTGTGTGAACAAGAGAAAGGGGATGGGTTGGG
TTCTGTCGGGGGAGAGAGGCGACTGGGTCAGGGGCGATTCGGTCGGGGGGTTTCTCTCCT
TTTCTTTTTTTCTTATGGACAGGGGCAGTTTCGCCAGTGAATGTTCACTTTAACGGCGTG
GGCTAACAGAATGGACAAAACTGTTAGATAAGGCAAAATATTTACACTCAGTCCTAGATG
AGGAAATATTTTTTTCTGTGTTAAATAGGGAACTAACATTTAAAATAGTGTTATATAAGG
AATTTTCTCAAATTATTATTACTTAGTCTATTACGAACAGTTATTAATATGCAATATAGA
AGTGAATGTGCACCCACACACAAAAAAAAAAAAGCAATCTCGTTATCTTTGGTACAAGAG
TTACCTTCAATATGAAGATCACATTACCACCCAAGCTAAAACTGGAAAGCCAAATAAAGA
TCCTCATCTTCAGATGATTAGTATTGCCTTGCAGCCAATTGCCCCAGCATATCACAAAGA
GATATGAAAACAGAGACATCAAAAGATTGCCACATAGTGGGGAGAGAAGAGATACAGTTT
TAACTCTGCAGACAGAAGGGGGCAGGAGAAAGAATGATGATTACCACTGTTTTTAGCTTG
TAGTAATCCAGTAGATAGATTGCACAAATTAACATCAATCATGAGCACCTTACAAATAAC
AACCCAGAATAACGTAAAGTCATAAGCAGGCGAAAACTTTGCACTTCTACAGCAAAAGAT
TACGAAAAGTTTATTAAGCCAACTATTCAACAGTAGATAAAGGTACAGCTGTGGGTAATG
GACTACAACAAACACATTCTATTTATTAGCCAGATTGTTTAAAAGGCAACTGACAAAGGA
AATTTCGGATAAACATGGCCATTCTGTGTAAACAAAATAATACAGACGGCAGCAAGAAAT
AGGATACAGAGATTACAACAATGTCAGTGCACAATCTGACCTCACCTACCAAGACTAATA
GTTGTTCTCTTTTAGTGGCAATCTTCTATCTGGGAGAGCTGCAGATTTGTTCCTGGTCAG
GGGCGAATGATTTCTCACGTTTGGTTTCTCTAAGCTAGGCATTTCTTTGCTGCTAGAACT
CAAGAGAGGCTCCTCGATGTTGGCTTTCTGCATGATCCTTGCCAAGCTTGCCTTCAGATC
CTCATCGGCATGAATCGCTGCTCCAATCGTACAGGTGATTCCATTCAGCTCATCAACTAA
CCGTTTCCTTTCTTCAACAGCAACATTACATATATCCTTTGTTCTGGACTTCAAGTCTTT
CAAGTGTTCTTCTAACATTTCTTTACTTTCCTCCAAATCTTTGTTCCTGGGCAGGGGCAA
ATGATTTCTCACGTTTGGATTCTCTGAGCTATTCATTTCTTTGCTGCTAGAACTCAAGAG
AGGTTCCTCGACGTTAGCTTTCTGCATGATCCTTGCCAAGCTTGCCTTCAGATCCTCATC
TGCATGAACTGCTGCTCCAATGGTACAGGTGATTCCATTCAGCTCATCAACTAACTGTTT
CCTTTCCTCAAAAGCAGCATTACATATGTCCTTCGTTCTAGACTTCAAATCTTCCAAGTG
TTCTTCTAACATTTCTTTACTTTCCTCCAAATGTTTCAGCTCATTTACTACTTCCAGGTG
CTCCTTTTCCTTCTCTAATATCTCCGCAGTGGTTTCAGCTCTGAGTTTCTCAAGAACATG
CTTCAAATCGCTCGACTGTTCTTTCTCTAGAACCAATTTCATTTGCAGGGCCACCAGCTC
TCTTTGGCACTCTTCAATGAGCATGTCTTTGAAATAACTGTCATGTTCTTGGATGAGATT
CAGAGAATTCAGATTTTCTGCAAAGCCATAAAGCTGCTGGACCTCAAGCTGAACTTCTGA
GAGCTTTGATGCAGCAGCATCAAGAAGATGTTTTATGTTAAGTTGAACAGATTCAACAAT
TTCTTGAATGTCAGCAATAGCGTTTTCCTTCTCTGCAATTAGCATATACCAATCTGCCTC
CTCTTGATCAAATATTTCCATAATCTCACGCTCTCTGCGTGTGTATTTCTGCTCAAAGAA
ACCAAGCCTTGTTTCGAGCTCCAAGAGCTTTTTGTCAAAGATTTCAACAATTTCAGAGTA
CCTGTTGTTCACTTCTTGAATGGAATTCTTAACCTCTGACTTGATAAGACTGGCCACATC
AAGTTTTTGGCCCACATTATCTTCTTCCAGCACACTGATGTATTGCTGAAGCTCCTCAAT
GATCTTGTCTCTCTCATCAATTATGCTTGATAACTTATCCTTTTCTTCTCTAAGGGTGTC
CTCAACTTCGAACTTGGCAACAAGAGAAAGAACCAGGTCCCTCTTTAGTGCACAACTTTC
ATCCTTATAGCGCTTGAGTTCAGTTTGCATGCCAACTTTTAACTTTTCCAGACACTCCAG
TGCTTGCTTTTGCTGATGAATATTGGTCTTGAGTTGGTCCAGCTCTTCCTTCATCTCAGA
AACGGCAAAGTTTGCTTCATTGAGAGCAAACAATAACTTCTCCTTTTCTTCTGTGTGGAT
CTCCGCAGCTTTCATATTAGCAATAGTCGCGACATCGAGATCCCTCTTCAATACATTGTT
TTCATCCACGCAGCCCTTGAGTTCAGTTTGCATGTCAACTTTTAACTTTTCCAAACACTC
ATGCGCTTGCTTTTGCTGATGAATATTGATCCTGAGTTGGTCCAGCTCTTCCTTCACCTC
AGAAACAGCATAGTTTGCTTCATTGAGAGCAAACAATAACTTCTCCTTTTCTTCTGTGTG
GGTCTCCTCAGCTTTCATTTTAGCAACAGTCGCGACATCAAGATCCCTCTTCAATACATC
ATTTTCATCGACGTAGCCCTTGAGCTTAGTTTCCATATCAACTCTCAGCTCTTCCAGATG
CTCTACTTCTTGCCTTTGCCGGTGAAGGGTGATTTCTTTCTCACAAATCTTGCTCTTACT
CTCGGAGAGGGCACAGTTTGCTTCATCAAGAGCACCTAGTAACTTCTCATTTTCTTCCCT
GAGAGCCACCTCAGCTCCAATTTTGGCGTTAAGAGCAACATCCAGATCTCTCTTCAGTAC
ATGGTTGTCATCCATATAACCCTTGAGTTCAGTCTCCAAGTCAATCTTTCGCTTTTCCAA
ATGCTCAACCGCTTGCTTTTGCTGATGGAGATTGATTTCGAGTTGTCTCAGTTGGCTTTT
CTGCTCATCAAGGTCACGGTGTGCTTCATCGAGATCACTTAAAGCTTTCCCCAATTCCTC
CTTAAGGCTCTTTTCCTTCTCTGAAGTCTCATCTTTTAAGCAGTGAACATTTCTTGATGC
ATTGTCCAGCATTTCTTTGTATTCCCCAAGTTGCCTTTGCATCTTTTCATGTTCCTGCTC
CATAAATTCTAGCTGTTCAATTCTTCCGCGCAGTGTCGCCATTACCTCCAATTGGTGTGC
CTGTTCAGCTTGGGACTGAGCAATGACAAGGTTCTTTTCCTCCAACTGACTTTTCGCAGC
AGCGATATTCTGCTCAAAATATTCACAGCGCTGCTGCATATTCAGTTTTAAAGTATCAAC
AAATGAGCAGGAATCGTAGAACTTTGCCTCTACAGCAAGACAGACTATTGAAGCTTCCAA
GTTCTCTACAGTTCGGAGCTCCAGTGAGCTATAACTGCTCAGCAACTCATTTTGCAATTG
CCTGATTAGCATATCTTTGGAATGCAGCTGTGACAAGCATCCATTAAGATCATCCTCAAG
CTTTCCCATCTGTGCTTTCCACTCTGTTTCTTTATGACTCAGCTTCTCATTGCAGCTCCT
ATGTGTCTGCTCCAGAGCTCGGAATTTCTCCCGCAGACCCTTCAACATCCCTGCGGCATC
TGCACCGCCGATCTGAGCCTCTTGGTACTCCTTAAATAAGGACCGCAGATCCTCATTCTC
TTGATCAAGGCGCGCCTTACAATACTCCATCTCATTGAGCAAAGTGGATTTCTCAGCCAG
TGAGCTCCTCAAGGACGCAATCTCGCCATCCCTCTTCGACGTCAGCAACTCAATGGTCGA
CCTGGCCTCTTCATACTCGGAAACCACATTGCCATACATATGCCTCAAATCAGACATCTC
TGCTTCGAGCAGCTTCCTGCGGCCTTCCTCGTGGGCCAACGCCTGGCTGCACATTTCGAG
CCTCGACCGGAACTCCTCGGCGACCCTCGTCTTGGAATCCAATTTGGTCTCGAGGGCGCC
GATCTGATCAGCCAAGGTTGACCGGTCTGCGCCCCACTGCCTCTCGGCATCCCTGAACTC
ATCCCGGACCTTCTTTAGGGCCTCCTCGAGGTGCCGAAACTGCTCGGCCTTCCACTTGAG
CTTGCCCTCGATGGCAGCCTTCTCCTCCTCCAGCTTGGCGAGGGTGTCATCCCTCATCAT
GACCTCCCTCTGCGCCAATGCCCTCTGCTCAGCCTCGGAGCACCTCTTCTCCTTCTCTGA
CAAGAGCCTCTTGAGCCGGGAAACCTCCTCGTTGCAGGAGCGCACGGCCACATCCTGCTC
CAGCCGCTTCACCTCGGACTCCTCCAGCGCGGCGACGAGCCCCCTCCTCTCGGCGTCCCA
GCCATCGCCCCTCTCCCGGAGGCTGGCCTTGAGGCCGTCGTGGGCGGCGCAGAGGTGCCT
GAAGGCCTGCTCCTTCTCCGCGAACTTTGCCCGGAGGTCCTCGCACGCCTCCCTGGCGGA
GGAGGCCTCCTGGTCCTTGGCGGCGATCTCCCCCGCCTGCCGCTGGACCTCCTCCCTGGC
CTCCCGCAGCCGGGCGGCCTGCTCGGCGGCCTCCCGCCTGAGCCCGTCGACGAGGGCCGA
CTTGGCGCGGCACTCCGCGGCGCGGGCCTCCGCCTCAGACCGCAGGCCGTCCAGCTCCTT
GCTCATCTCCTCCATCTCAGCTGCCCAGATCAGAACAAAAATCGTCAGGCACACGGAGAG
AAGTCGATGGAATCTCGCGAAAGGCGAGGCCTCACACCTTTCTGGGAGGAGCAGGTCGGG
AAGAAGGAGCGGGACATGGGGGCGGGAGCTAGAGATCCGGCATGGGCGGGAGGGAAACCC
TAGAGAGGGGAGGGGCGGGGGTGAGGAAAGATTTGGATTTTGGGCGGCGCCGTTGCGATT
TACTCACCTGGGGGTTTGGGGCGGACGGGACGGAGAGGCCGGCCGTCCTGTCAGGTGGGG
CGGGCGCGGCCGCGGCGGCGGGGGGCGGAACGGATCTGGGCGGGCGAGCGGGCGTGGCGG
CGGCCGGGTCGGGGGCTCCGTTTGGCGCTGCTCGCCGTTCTTGGCTTTTGAATTTGGCCG
CGCCGGGAGGGAGGAGGAGTGGCCTAGCCGGCAGGCCGACAGTTCATCAAATTTAGTAGA
TGGGTGAGTAGGCTGACAGTGGGGTCCACATGAGTTTACCCCAAAAAGATCGGTAAAATT
TGCCGAATTTTCACACTGGCTGGAAAATATGAAGCATTTACAGTAAATCATAAATGGGAT
CCTTTTTATTCTGATAGATTTCAACCAGTCGTGTCAGAAATATAAATATTTGGACCCTTT
CGATGTACGTCTCCTTTTATCGTCGGCAGTTGTTGTTTTGATGCGCTGGTTCTATAAAGC
CTGGGCCCGATGAATTTTTTAATTGTCTATTACAATAAAAAAAAATTGGTTTCGGATGAG
GGATGGGCGATGATAGTAGCACGATTTCAACTCGCTTTAGTGATTGTAGTCGGTGCTAGA
TGGTAGGTGGTCTATAGTTTTGAATGTAATTATTATTATTTTTGGTGTTTATTGTACTAT
CATGATTGAAGATAAATATATCTTAAACTTTTTCAAACATACATACTCCGAGGCTGCCAA
GGACCAGGAGGCCTCCTCCGCCAGGGAGGCGTGCGAGGACCTCCCGGTCCTTGGCGACGA
TAATTTGATATGTATGTTTGGAAAATTTTGAGTTTCAAATGTATTTTTTATTATTTCTTA
TGTTTATTGTACTATCATGATTGAAGATAAATAGATAAAAGTTTGACCTCTGCATTTGGT
AGATAATTTGCTAAGTTAGACCCTATGTTTTTACTGAAGTTACTCCCACTATGAAAGCAT
CTCCAACAACGGCGCTAAAAAACGCACGCGTGGGATAAACTGGATTTTTAGCGCGAGAGA
GACGGAAACGCGCGCTCTAGTGGAGGCGAGAAATTTACGCGCGCTGCAAATGATTGCGCG
CGCGAGATAAAGGGGGCGGCCACGCGTTAGATTTGACGCACCGTTTCCGACGCGCCTATA
AATTATGGCGGTCGTCACGCGGCTCCCGTCGTCCTCCGCACTATCACGCATGAAAATGCA
TGTCTCCTAGAATTTTAATTGTCTTCGTTTGAGCCCTCGTAAGATTAAGAATGCTAGAGA
CATGAGAGCTATATATTGCTCATAGCAAGATTTTTTTTTTCTTGTGGCAGCTTATATGAA
GATGGAAGGAGCTATTGCCATAGAATTTCCCTCTCCCCTTGTTTCTGGACCGGCCCATTT
TCGGTGCTATTTTTGGTCATTCAATCGTGTGTTTGTTCGTTGGTTTTGGTATGGTTTTAT
CTCTCTTTCCCCCCTTTCCATTTTTCATTTCTTTGTTTCTTCAAGGTTTTCTTTGGGTTT
CATCATTTTTCTTTGTTTTTTTGGGTTTTTATTGGGTTTTTCTCTTTCGTTTTGTTTGTT
TTCTTTCTTCGTTTTCATTGGGTTTCTTTTTCTTTTCCTTCCTATTATCTTTATTTTTTT
TCTGTTTTCTTTGTTTATATTTTGGTTTTCGATCATAGTTTTTGGCTTACTTTGTTTCTT
TATCGTTTTTTATTTTTCTTTGTTTTTTGTTCCTTTGCCGGTTTTTATTACATTTTTCTT
TTCACGTTTCCACAGAACAAAAACATTTTTTAATAAACATTTAATATTTTTCAAATACAT
GAACCATTTTTTCTGTACACGTTGAACATTTATTTCGAATACATGATTAACTTTTTCCCA
CACATATATTTTGATGCTAAATTTTTCATCCACATTTTTCATTTTTTATATACATCAGAA
ACATTTTTTAAGTGCATGTTTAACATTTTCTGAGTACATGATTAACGTTTTTGAAAACTT
ATTTTTTTATGTCTAATGTTTTTCATACACATTGTACCATTTTTTGTATACATCACGATT
ATTTCTTTAATACAGGTTTAACATTTTTCAAATACATGACTAATTTTTTTTAAACCATAC
ATATTTTGTGTCTCCAAACACGTTATACATTTTTTGAACACTTTTGACATACATGTTTCA
CAAAACATGATCAACATTTTTCATATATATGTTTTAATATCTATTTTTTTGAGTAAATTA
CAGAAAACCATCATAATTGGGGACACTAAAATAGAAAACCACCACCATTCATTTTGTTTT
CAGAAAACCATCACCACCGTGCTCACAACTTTTGAAAACAATAATCTATTACTAAACACA
TGTTAACATCATTTCTGACACATGGGGCCCACCATAGGTGCTGATGTGGCAAAAGAAACT
TGACAACGTTCACCTAGACGTTAAATCAGAAAAGTGGTCCACCCGTCAGTGTCTCCTATG
TCTCACGGCAAAAATGGACGTTGCTGCCCGGCGAGGTCAACAGCGAGTATCAGAGGCCAT
CCAGCTCCGGCGAGCGCCAACCTCCGACCTTCACCGATGTCGGCCCCTCCTCTCCTTCTT
CCTCACCCGCCACGCACTTCAGCTGCGGGATGCACACGGGGTCGCCGTTCGGGAGCTAAC
ATCCACTAGTAGGAGAAAGGCTACCAGTAGCGCTAGTTTGTCCCTTACTAGTAGCGCTGG
TGCTAGCGCTACTGCAATCGCGCTACAACTTATCTGTTAGCAGTAGCACTGTTTTATCGA
GCGCTACTGGTATACACATCAGCAGTAGCGCTGGAGCAGATAAAGCGCTACTGATAACCC
AGCGCTACTCCTAATATTCCAGCGCTACTGCTAATGTTACTGCTTTCAATATTTAATTCC
CATCGTATTAGCAGCGCCATTATACAGGTTTTCACACAGTATCATCACAATACATCATTG
TCATATAACAACTCCTCAACAGCTTAAAAAATAATGTATGCAAAAGATGCACTGAGAACA
AATAGTAAATATCTTACCATCTTTCCTAAATAGATGTGGCAGTAGTTCAATACGCACACT
AGTATCTCACGTTTTGAGTACTAATATCTCGAAGTCCAGGAAAATAACCTGTCTTGACAG
TATCATGGATCATCAAGCCATGAAATATAATGACCTCTCCTCACAGTTTAGTTCAGCCCC
GGGACAGTAGTAGGTGTTGTCTACCAAGCGCTGGACATGTTTGCTTGATTGGAAATAAGC
TGTCAATAGAAATTAGTTATCAAGTATTTTTAAATAAACAATATAAATTAATTAATAAAT
ATGGTTGAGGAACTATTACTCAATATGCAACGGGTTTTCTTTAATTAGGTCTGTCGAGTC
TTCCTTCCTAAACTCTTATCTTACGTATATGGTGGACAGTCCCTCACCGATTTTCTGACC
GTCGATGATGGTCGCTACTCCTACTTCCCCTAGTGCATTACAAATATCGAGCACAAGGAG
AAACAAGGAGAAGCGACCCCCATGACAACAGTCGGCATTCTTTGTGACAGCCCGAGACCA
ACGCTCCAGAAGATTCCCCCCTT