morexGenes - Barley RNA-seq Database

Contig contig_85750

Source Contig contig_85750

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_85750 (3881 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_85750

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_79579	1	442 bp	AK371111	Not available	Available	None
MLOC_79578	1	525 bp	AK371111	Available	Available	None

CDS Structure of MLOC_79579

CDS Structure of MLOC_79578

Contig Sequence (3881 bp)

>contig_85750 3881 assembly3_WGSMorex_rbca.fasta
TGAATCAACTTGGGGTGCATTGGGCATCCCCAAGCTTGAGGTCTTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACGAAACTTAAACAAAA
ACTCTTTGTTCATAACTCTTATCTTGACATCTCTGCCTTGCAAGAGGATGCCAAGGATTG
GGCCGTTGATGTGCTCACTGATGCATTTACTAGAGCAGAAGAGAGTGCTAAGCGGAAATG
ATTCAGAAGAAAGGCACTTTGAAGTTTTGTTTAGAGGAAACACTGTGGGGTTCTCTTGAA
TGCACGTTTCTTGTTGTCTTTTGAAGTTTGAGTTCCTCACTCCTGGTAAATGCTAACCTC
CGCGGTGAGCTATGGTAGCCGCTTAGGATATATTTTTTTCCTTGCTGCAATAAATTTCCA
GATATATGATTCTTTCGGTCTGTATAGAAGCTTCTCCCTGTCAATTCAATGACCTGAAGT
TGATATCGTTTGTTTGGATGCAAACTAACAGTAGTAGTGGATTGTAAGTGAAGGGAAAGA
GGGGTTGTATACTTTCAACAGTTCCGTTTAGATCTCAGCAATTCATGCCTTCAGTGACAG
GTCTGGGCTAGTAATTTGAGGTACTATTATGGTTTAAACAATCCCCTTTGTTATCCAGCT
TTAAGTACTACTACTACTACTCACTAGTGATTTGAAGTACTCCATCCGTTCCTAAATATA
AGTCTTTTTAGAGATTTCAATTAAGACTACATATGGATGTATGTAGACATATTTTAAAGT
GTAGATTCATTTATTTTGCTCCTTATGTAATCCGTATTGAAATGTCTAAAAAGACCTATC
ACTACTGGAATCCGAGAATTTACCATCTGCCTGATCTTTGTCGTCTGCTCCCTGATGGTA
AAAAGACTATTTGTCATCAGCTGCCAACAAACAAACGGCAAAGAGCTGGCTGATGGCAAA
GATAATGTTTGCCATCAGTGCTGGCAGACGGCAGAGAGCCTATGCAGGTCCCACTGCACC
GTCAATTAAGTGGGCGGGTGTGCCCCCCTCTTTGCCATCTGTCTCCATCCTCTTTGCTGT
CAGCTGCAGCTTTGTTGTCCGCCTCCCCCTCTTTGTCGTATGTCTCCCCCTCTTTTTCGA
CAAAGGGACGGTCACATAAAGGTCACTTTGCGCCCCCATCTCCCCACCTCACTTCTCTCT
CCCTCCAGCCACCTCTGTGTCTCTCTCCCACCCCCTCTCCGTGTCGCCCCACAACCACCA
CCGCGCCGCCCCCTCCCTGTCATGCACCATCGGGCCAGCCCTCTCCCTACGCCGCCCCCT
TCACCATGCCGCCCGCTCCCCGTGTCGCCCCACAACCACCACCGTAGCTCCCCCCTCTCG
GCGCCGTCCTCTCCACCGCGGCTCCACCTGCGTTGACAAGCCAATAGATCCTAGATCAGT
TAAACGCTCTCGAGCCTGATCCTAACTCTCGAGCCTGATCCAGAGCGGCCACGGTATTTT
AAGGGGTATAATTCAGAACACACGTGGACCGACCCACATGAGGCTGCTACGAGCGCCAGC
CAAGCCTAATGTCGTGTTGTGCTTGGTTCGTCTCTCTTCTCCCTCCTGAAGCGTCGGCGA
AACACGACCGTCGCCGCGGCCGAGGGGAATCAGGCAAGCAGCGGAACATGTGTCATTAGG
TGCTCCTAGGAGCGAGCGGACGGTGATGGACGCGCACCTCCTTTAAGACGGCTCCACTTC
CCTCGCCCCGTCGTCCCGTCTAAATCGCCGGCGGCGTGAATGCAGCGATGCTGCGGACAG
GCTGCGCTGGGGAGGGGCGGCCATGAGGCATGTCGTGCTGGCCGAGGGATCCACGGGGAA
GTGAATATGGATTTGTAAGATATGATCTATGGTGTATGCATGTGAACCACCCCTTTCTTC
CATTCTCTCAAACGGACGCACACCCCCTCTGTCGCGTTGGATTGATCCATTTTTGATTTA
TTTTTTCTGTATCTAAATTATGTGAGAGTTGGGATACGATCCCACGATGAGCGGGATTAG
TGTAAGATGCGACAACCACCTCGACCACTTGACTTGTCGTGATTACTTACATGTTTTGTT
TTGTTTTCTTCTTTCTCCTTTGTTTTTTTCCTTTATTCTATCCTTTTTTTAATTTTATTT
TACCTAATTCGAGAAACTTTCTTTCTTCTTGATTTTTTTGGAAAATTTATGAACATTTTT
CAAAAATTTATGAACCTTTTTAAATTCGATGAATTTTTCTTTTTAAAATTAGTGAGCTCT
TTTCAAATTTGATGTTGTTTTTTAAATTGTGATGAACTTTTTCCAATTTCCATGAACTTT
TTTTGCAAATTTGTGAACTTTTTTCAATTTTTCATATCCCATAATTTTGTTTCACATTTG
ATGAACTTTTTCCAAGTTCGATGAAAATTTTCCAATATTTTGCGAAATGTGTTTCAAAAT
TGATGAACGTATTTCTAGAATTGATGGAACTTTTCAGTTTTGTGAACTGTTTTCGAATTC
ATAATTTCTTAATCCACGTTTTTCAGATTTGTGAACAAAGGGCCGAACACCTGCGTCGAA
CGAAAGGGAAAGATCGAGCGCGCAGCTGGGCCGGCCCACATGAGGCTGCTACGAGCGCCA
GCCAAGCCTAATGTCGTGCTGTGCCTGGTTCGTCTCTCTTCTCCCTCCTGAAGCGCCGGC
GAAACACGACCGCCGCCGCAGCCGAGGGGAATCAGGAGAGCAGCGCAGCATGCGTCGTTA
GGTGCTCCTGGGAGCGAGCGAGCGGACGGCGACTGACGCGCACCTCCCCTAAGACGGCTC
CAGTTCCCTCGCCCTGTTGTCCCGTCTAAATCGCCGGCGGCGTGGACGCAGCGATGCTGC
GGACAGCGCTGCGCCGGGGAGGGGCGGCCATGAGGCAGGCCGTGCTGGACGAGGGATCCA
CGGGGAGCCTTCTACGGCTGAGCGTGGCGGAGCGGGAGCGCTCTCGCCGGCGTCGGCGCG
ACCCAGGGCGCGATGAGTTCTTCGTGCCGACGCCGGAGTCACTTAAATGGCTCGACTCCG
TCACCCTCCCCCCGCGCCCCACCCCCCCCGCCGGCGCCCCTCCGCGCGTACCCGCTTCCC
AGCCCCCGCCGGTCGTCGGGCCGTCTTGCCGCCGCCAACCGCCGGCCTCTGCCAGAGCCA
CCCCGCCCTGCCTCAGCCGCCGCATCACCAGTCCCGCCGACCTCTGCTTTCGTCACCCTG
GTCTGGATCGAGCGGATCCAGATCTAGTGACCTGCCACTCACGTTGACCTGGGCCACAAC
CCCCGGGCCCAGCCGGCCCTCTTTGCCCCACCTGGTCAGGCCGGCCTCGCTCCACTAGGC
CACCAACCGCAGCTTCGGCCAAGTCCAGCCGGCGTGCTAGCCACCCCGAGGCCCGATCCA
GCCCAGCTCCAACCGACCTAAGTGGCGAGAGGTGAGAACTCCCTAAGGCCCTCTATTTCG
TGCCCTAGGCACTTGGTTGTTATCCAGCGCCCATGCTGTGATTTCATCCCACTATAGTTT
CGGCCCGTTGTATTTTTTTAGCACCGACAATTTTATTTAATTTCAGAAAAGAGCATAATT
TTCAAACGCCCGTATGTTTTTATCCGTGCATCGGATCGCGATGAGTTATATATGTAAAGT
GATTAGAAATTTGCTTAGATTAAGATTTTCCAACCCTCATGCATATTTAGAGCTGTTTAG
CATGATGTTTGCATCGATTTGCATATCGACGTAATAGAAACGGTTTAGATCGTAGTTATT
TAACCGTAGCTCNNNNNNNNATGAGCCATATATGTAAACGGACTAGAACGACGAGTAGAA
TAACGTGAACCACTTTGTTTTGCCGTTTAACAAAGATAAAA