Contig Data
morexGenes
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Map Locations of contig_8541 (4331 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_8541

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_79517 1 787 bp MLOC_79517.1 Available Available LOC_Os03g40550.1, FRAME:+2, EVALUE:1e-99, 13103.m04385 protein kinase, pfkB family, putative, expressed
MLOC_79518 2 1235 bp MLOC_79518.1 Available Available LOC_Os09g03210.1, FRAME:-3, EVALUE:4e-54, 13109.m00243 protein expressed protein





CDS Structure of MLOC_79517






CDS Structure of MLOC_79518






Contig Sequence (4331 bp)

>contig_8541 4331 assembly3_WGSMorex_rbca.fasta
TAGGGGGGGAAACCCCTTTCGTTCAATTTTTTTTTCCTTCTGACGAATCTGAATATGCAG
TGGTTTCACTTTAATTCGGTCATCCATGTAAGTGGCGAGTCGGAGAAACATTAATGTTGC
AATTTTCCGTTAATCTTGCTCTGCATCCATACTTGATGTAGAGGAAGGCTCAAGTGGTGA
AGACAGTGATGCTGAAATCCCAAAGACCAAGAAAAAACCTGCAAAACGTGGAAGGAAAAA
AAGCCACAATAGATACACCAGCAGGGGAAACACAAGAAAGCCGAAGTGACACTGAAGATG
CATCCCCTGAAGAGCCTAAGAAAGTTAAAAGGGGAGGTCGCAAGAAAGGTAATGTGCATA
TTTTGCATTTAAGAGCACTCTTCTTATGTATATTGATCAACGGAGTCCATGATTTTGCTA
GATCACATCCCTTAGCAATTCAACTTCTCTCCTGTGTCACAGCTGTTACTACTGCATCCT
CTGTTAAGGAGGCTGACAAATCAAAAGAACCAAAGAAGAGGGGCAGAAGAAATGTTAAGA
CGGCTGAACAATTAAGTGATGATGAAGGAGAAGATCAGATCGAAGATCTGATGCTCTCTA
ATGAAGTAAAAGTTCACAGTTCAACCAGTGATCTTGAAAGCAAAGTAGAGGCGTTGTTAT
CACAAGATATTGGAGAGGTTGACAAATTAATGCCTCTTGTTTGCTGCTTTGGACCAGCTA
AGTACTCATTTATTCCTTCTGGAAGACCTGCTAAAAGGTTAGTGGATCGTGAGATTCATA
GTAGAATGAAGGATATGTTTTGGTCTCCGGATGAATTTGTGAGGGCACCTGGAGGGTCAT
AATCTAATGTTGCCCTTGCTCTAGCAGCTCTGGGAGGCCGGGTTGTGTTCATGGGAAAAT
TAGGTGATGATGAGTATGGTCAAAGTATGTTGTATCACTTAAATATCAATGGAGTTCAAA
TTCGGGCAGTTAGCTTGGATCCTTCAGTGCCAACTGCCATGTCCTTGATGAAGGTGACGG
GCAGAGGTAGCTTGAACACATGCTGTGTTAAACCATGTGCTGAGGATTGTTTTCAGCAGT
CTGATATTAACCCAGATGTTCTAAAAGAGGTATAGACAAGCCCATCAACTTATAAAGTTC
TAATGACACCATATCCGACATTCTTGTTCATTACAGGAATTCCTAATTGATGCTTAGTTG
ATCTTAAAAATAGTTTGTTCGTAATTCCAATGACACTATATCCTACAAGCTATGTTAAAC
CATGTGCTGAGGATTGTTTTCAGCAATCTGATATCAACCCAGATGTTCTAAATGAGGAAG
ATTTTGTACGTAGTTTATTTTTTAGACAGAAGATATAGAAATATTCGTAGTTTGTTGTTT
TTCTGCAGAGACTTGTGCTATGACTTATTTTTTTGACTTGATAAAAATCAGAATTGCATA
AAACCTGTGTAATAGTGAAGTGCTAACCGCACTCGATATACTTAAGTCCTATAGGATAAT
ATCCTCGCTACCATTGAGCACCTAATTGATTTTGCCCCTAAATTAAAAGAGCATATTGAT
AATTTATATGGAATAACCAGTTCAAACTTCAGAGGTTAAAGGTGGAACCAAAGAGACCTG
CCGTTCAATTCAAAGTTTGTACTACTTGCTAGCTTAGTTGTTGTTGTCTGTGTTATGCCT
AACTTGGCCAAATATTTCTGCTGTTTTGGTAACTGAAACGTCAGGAAATGTCATTGCAAA
GCTCTCGGTCTGTTGTCATTCATTCAGGTCTGGCACCTCCAAATTCATTTCATATATGAT
GATGATCATTCCCAAATCCGAAAGTGGACACACATGTACAGAATATATATGGAAAATATA
TGCACATTCTGGTTTTATCTGTCCTTCACATGCAGTGCAGACTTGTATAGTACAGTATAA
TCTTACAATCTGACAATGCAACAAAATATACTTCCTCCGTTTAGACTAGATACGAAACAA
AATGAGTGAACCTACACTCTAAAATATGACTATATACATCCGTATGAAATCTTTAAAAGG
TATATAGTTCATAATGAAATCTTTAAAAGGTNNNNNNNTTAGGAATGGAGGGAGTATATA
TTTGTATGCAAAATGTATTACTATATGCAATGCCACATGGGCTAGTACTTTTTGTTGAAA
GAAAGAAAATCGGGTGCTGAAACAAAATCAAAGGGATGCACATAGAGTTTGTCTGTTCCT
CATACTCCAAAGCTCGTGCCAGATATATAATTCTTACCACACTCAGTTGTAACGAACAGA
GTGATAACAAAAGGTGATAATTAAGCTTCAACCAAAAGTGTAGACATATTTAGTACGATA
GTATATACAGAGCACACACATCTTAATTTGGATATAGCATGTTCAACAAGGAAGATAGGG
AATCAGCGATGCACAATGGACCAAGTGACCTTCACGAGCATCTTATAGTCCCCGCAAGTG
ATTCTCTCTTCATCATAGCTGCCGCGCTTTGGAGTAAACTCGACAGTGCGAACAACGCCT
GTAGCAAGGCAAACAGTCAACAGGAGTGTCTCATCAACCGAGACACTGACTACGCGGCGC
GCTGTTTGCAGGATCCCACCCTCACCAGCTGTTAGCATCCCAGCAAGTTTGCTATCATGC
AGCATAATGTCACATGGAAAGCTGCTAGTGCGAACGACGATTTTCCCATGGAAATTAACA
GGTCCCGCCTCAAGGATCCTCATCTCAACGGTGCCCTCCACCGCCTTCCTTACAAACGTG
TAATTTAAATCCAATGTGCTGTGCATGCTGACAAGCTTTTTGGTTTGAACAATGTATTTC
GGTGGAAATGAGAGTCTGAAGATACCATTAATCTCCGTTAAACCTTTGCTAACTCTCTCG
TCATTGACCTTTCTGCCATTCACATCCTTGACCTTCAGATCAACTTCAAAAATTATTGAA
TCAAATATCATCAGTCCTCTCTTTGGGCCAGTGAGAAGCAACGGATCATTCTGCAAAGGA
AGTTAATTTAGCTCTGTTTGTTTGAATGATAAAACAAGGTTATCGATCGAAATAGATTAA
TTTCAGTAGCTGGCATTCCGATTGCTGCTAAAATCATTTGCTTTGCTTTAAGGAAAACAA
TTGTAGTATTGGTGGTATTTAAAATCAACACTAATTATATGGGGACTAGTCTCTTTGTAG
ATACTTGGCAAAATGAGAACAATTCTACCAGGTCCATTATTTTTTAAATATGATATACAA
AACATAAAGCCCTTTTTAAAAACATTATAGAATGAATCGTGTTCCTGCATGAATAGTAAC
ATGGATGTGCTTCTTTACTACATTCACTGATGTTTTTTACTTTAAAAAATTCAAGACGAG
GCAGTTTATCTGATGACTTGATACAAGAAACTTAACAGAGAAAGCACCAACACGGCAAAC
GAATTTCATAATATAATCCTGTAGCCACGAGGAACGAGCAAGCATGTGCATATATATCGC
AATTACTATGAGGGTGGGTTAAAAACAATAATAATACCTTGGAGGTGATGTTCTGGCAAT
CGTTCTTGCCGCGCTGAAATAAATAGATGCGTTGGCGATCCAGACTGTCCCTGGCTATGA
TGGTGCCGTAGATACTGAGTGGGTATCCATAGTCAGAGGAAACAATATTGACCGAGACAA
TATTAACCGAGTTACACATCCGGGACCCATCTTGGAAGATCCTATTAGTATTGTACATGG
CACCAACAGGTGCTGCCATGCCAGAAGAAGAAGAAATGATGAGGAATGAATCAAAATTAC
TTGTCCATCTATCTAGGAATAGGATGCAGGAGTGAAGTAGCAGAGCTGCACTAGTCAGTT
GAGCAAAACATCAGATTCAGACGTCCCTACTAGCTAGTTAGGCAAAACATGGGATTATGT
ATGCACATATAAACTGGCCGGGTGGCGGGGAACACCTGGTCGAAGAGGGCCGGGCGATTT
GCATTTTCAATTCAGATCAGTCGCACAAATAGAAACAAAACTACCAGCAGGGCAATCGAA
AGATGGGAAGGGGAAAGGGGGCGTACACTCCATGTCGAGGTCGAGCGTGGGATGCTGGAA
TCGGGTGAGGACGTAATCGCCCTCCTTGGGGTCGTAGTCGCTGAACCTTGGGTTCAGAGG
GTTCGGCCCCTTCTCCTCCTGCTCTTCATGCTGCTGCTGCTTCTGCTTCTTCCGAGCCCG
CGCGCTCGCCCTCCCCTCTCTCGCCGTGGAGGAGTAAGAAGAAGAACCGCCGCCGCCGGC
CATGGAGGGAGGAATCGAGCTAGGGCTTGGGGCTCCCCGAGGATTGAATCGGGCTAGTCC
CAACTAAAAAG