Map Locations of contig_85326 (8618 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_85326

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_79499 1 618 bp MLOC_79499.1 Available Available None
MLOC_79498 2 1579 bp MLOC_79498.2 Available Available LOC_Os02g27030.1, FRAME:-1, EVALUE:0.0, 13102.m02936 protein cysteine proteinase 1 precursor, putative, expressed





CDS Structure of MLOC_79499






CDS Structure of MLOC_79498






Contig Sequence (8618 bp)

>contig_85326 8618 assembly3_WGSMorex_rbca.fasta
CATGCATGGGCGTAGCAAATGGAGCAGATGCATAAGTTATACAGCAAGCATACTGTTGCG
GCTTCGCATCTCCGCTGCTGATAAGCGACGATGGAGCCTAGCGACTACTAGGTATTAAAG
TTTCATTCTAGCGATACATAGAAACCAAGATCGACTCCAGGAGGGCCGCCGATCAGATCA
GAACAGATCAGACAAGAGCCTACTCCTCCTTCGAGGAGTGTGTGGCGGACACCGTGGAGA
CCATGGAGTCGACGCCGCACTTGTTGCGCACGTTGGAGCCCCTGCAGATCTTGTAGTACC
CCTTGTCCCCCCAGTTCTCGCCCCACGAGTTCTTGATGATCCAGTATGGCTTCTCCTTGA
AGCGGGAAGGCGCAAAGCCGGACGCCCCGTAACCGACGAGAAGGACACCGTGGTCAAGGT
GCCTGCCGCAGATGTATGGGCATGACACTCCTCCGATGTATGTCTGCATGTATGCGGCAT
TGATACCGACTGCGCAGGAGGAAAAATATGTGTTACAGATTTCTAATGTATGGATTGATT
GTTCCATGTGCTTAGAACCACGGATCTGACTTATAAACTCTGCGTGAGACACTTATACTT
ACTTGCCAAAGGTCCATATTTCACAAGGTTGGCAGCAATCTGTTCTTCATCAACAGCGAC
AACGCTGTAGTTCTGAACTGAAGCAGCAATCTTGGACTTGTCAAATTTGCAGGTACCGTC
CTTCCCGGTGTAAGGGTAATCCTTTTCTCTCTCAAGGCCACCAGATTTCAACAGATAGCT
GAAGGCTGAAGTCATCAACCCACCGTTGCATCCAGCATCACATGAATCAGGCTCTGATGG
GTCGCACTGGAAAATTTCACAATATAATTGCAGCTTATTAAGTTGAGGCACCCATCAAGG
TAACCAGGCAATAAAAAGTAATATAATTGTTTTACTACCTACGGAATGTTCCTTGCATTC
GCATTGCAGAAAGAATTGTTCAATGAAAAAGCAAAAACAGCAAGGCATCGAACTAACTAT
TTTTCTACACAACAGTTGCACGTAATGCCAGTGGTTCTTGACTGGAGAAGATTGGTAAAC
TGAGATAAATACAAAGAAACATGTAGTGCCATTCAAATAAAACTAAGTAAACAGCAAGAC
TGGCATGTGTAAAAGGACCTTCAACAAAAGATATGCCTCGCAATGCATAAGAGTAAAATG
GAGCTAGCGTTGTCCCCTTACAGGTACCAGTACAAGTCACGGAATCTTATACCATGTATT
ACACATACTAAATCCCATGTAAAAATATATACTCCTATTTTACGATTTGGAGTCATGGAC
CAAACATTGGGCACTATCAAAGGACACATCCTATGCAATTCACATCTGTCATTTCCCTTA
TTGGTTTGGTGACAGCAATATAAGACGTACCCAGATAAAGTCTGCTTCTTTCCCATTCAG
TTACAGAGTTTGACAATATAGAAATCACCAAACAACTTAGTTAATTACACACAAAAATTC
AGCGGCTATGCCTATTCTGGATAGACAGTAATCTGGATAATCCATAGAGATCAAAGTGGT
ACACCTTCACAGCTCGCCCACCGAATCAGTGAATAAGTGCAAGGCGCCTTGGTGAATACT
GAATACTGGGTCACTGACTGATGATAGGTCTGTCTCAACCTACCCATTATCCTAATTTAT
GACATGCAACCACCCACCAAACATTTTTATCTTCATCTTTATTCTAGGCTTGAAGCTATC
ATCTCAATAAAAGGAAAGCTTTAAGCTAACCCACCCACCACCATCAAAAGGTTCTCCATG
GTAAGTTTGAGGTGATTGCTATGTTGGTTATTTTGGTTATTTTCATTCATAAAGAAGTCG
AACGCTTTTGTTGACTGTTAATTAGTGATATCTCACAGGATGTTGCCGCCAACCTTATCA
TCTCAACAAATTTCCCTTGTAAAGTTTGCCAGGGATACTGATCCCAATTCCCCTCTCAGA
ATTCACCTAGACTCCCCTTATTTGGTGTGTTGCCCAATCATAAACCGACAACACAGAAAA
GGTCTACACCAAGAGACAAAACATAGTGATGTGCCACAAAAATCCAACCTATTCCGCAAA
CAATCAACCAATCACAGAAAAGAATAGAAAAGAGCCTCACCTCGTGGTCGCAGTCGACCA
GCTGCTGCTCGGAGAGCACCTCCATCTTGCCTGAGGCCAGGTAGTTGGCCCCCTCCAACG
CCCCGGAGGCGCTGAACGACCAGCACGACCCGCACGAGCCCTGCAAAATCAAAGGTCAGG
GGGCGGAGGCCAGATCGGAAGATAAATAAAACGGCCAAAGAATCGGGGGAAACCTGGTTC
TTGACGGGGCCGACGGCGCCGTGGTCCCTCCAGTCGAAGTCCTCGGGGAGGCCGTCGGTG
GGGAGGACGGGCGCGTCGTGCGCCGACCCGGCCATCTCCCGCAGGAAGGATCGCCGGGTC
GTCTTGAGCCCCAGGTAGGTCCGGCGGAACTCGGCCGGGGTGAGGTCGGAGAACTTGGTG
ACCCCGTGCTCGGCGGACGGGTCGAGCAGCTGGTGCCGGCGCGCGCGGCGGAGGTTGGCC
TTGAACACGGAGAGCCGGTGCGCGTGCTCCTCCGCGTCCCGGTACGTCTTCCCGAACCGC
TGCACGAAGCCGACGAACTGCGAGTCGAGCTCCAGGTCGTTGTCGAGGGGGTCGGCGCCG
CCCACGACCTGCCGGATCAGGGGCTCCTCGTCCCCCGCGGCCGCCGTCGCCGGCGCCGGG
GGGAGGAGGAGGCCGACGAGGAGGAGGAGAGGGGCCACGAGGCGATGATCCATTGGGGGG
ATTTTCTTGGTTGCTTCTTCGGGTGGGTTATCTTTGCTTCGGCTCCACTTCGTGTTGCTT
TATAGGAAGTTGTTCACGGAGGTATTTTCCGTTTAGACTCCTTGGTGGTGTTCTCTTTGC
AAACGGGACCTCCAAAGATTCATGGATTATCCAAAGATATTTTACTCCGCATTGTTGGTC
CCACGGTATATACCCACCGTGGACGGTGGGTATGGAAAAAAAACCCGATTCGAGAGATGC
AACACCCCGATTTGTGTTGACAGCCATTGACAAAAGCCGATAATCTGATGTGCATTCGGT
CGCGCATGAAAACAACGTATATGCAAGACTAGGTTGCTCGCAACGAGACCAATAGGTCGA
CGAACAAACCAACACGTAGTCGAGTTGGAAAAAAAAACTTGGCTCTATTATCTGATATAA
CACATCTACCGACATCTGAATATCACCGTCATAACACCAAAACCTAACCCTAGTGAGAGG
CACCGAGAAGATTGTGTTGCACCTCAAGCAACATCACTAATATAGCTAGGCATTCGACAC
ACACAAACTAGGCTTTCCTCCACCTCCCGCCATCAAAATAGAGATCTAGGTGCCCCTTAT
TGTCAAGAGAAAAGGGAGATTGAGAGAATCAGAGAAATACTAGTAGAGCTATCTGTCACT
ATTATAAGATGTTTTTATCTTTTTTCAGGATCAGATGTATGTAGACACGTTTTAGCTTGT
ATGTTCATTCATTTCAGTTCGTATGTAGTTCATATTCAAATATCCAAAATATTTTATAAT
AGTGAGTGGAAGGAGACTAAAGTTAATAAAAATGTCATTCTAGCATATTCCTAAAACCCT
TATTTCTCTAACATGTTAAGAGGACCCATTAAAATTATGCACATAGCTTCTCAATATAGT
GAAAAGAGGGGGAAATACGCAAGCCCCTCTAACATCACTTTTTTAGCATCACGAAAGTTT
TGCCTTCTTTTCAAGCACCCGTTGTCGACCACCTTGCCATGCAACCATTTTTCTTCTTAT
CTCCGTCGAATAGTCACCATACATCTCTACTCAACGCCATGGATCCCCGCTGAATAAAAT
GCGACATGTAGTTTGCAAATGGTCGTTGTCGTTGCGGCTTGGCCAACCGCCACCATGGTT
GCATCGATGGATCTCACTACACAAGACCTTTGTTGTCGCAAACTTGTTCTCTCTCGTCAT
CCAGCCGTCTGAGAGAACTTCAACTGTATGCGTTGATCCTGCGCCGTCGGCTTCCACCCC
GGCCGGAGCATCATGGAGTCTCTGTGCAACCCCTCCTTCCTTAGAGCAATACAAACTCAA
GGTATTTGATGAATTGCTCAAGAGGTCATTTCAACTTGAATTCCTAGGTTTTAATCATAT
AAAATATATGTGTTGATTGCACAATTTATGTAGATGAGCTCTCTCATCCAGGAGTATTTC
GAGGATACTTCACCCTCATATGATTGCAATGAGGACTTGTTCCAAGATGGTGACTTTGAG
GAGGTTGCATTGTTGCTAGTTGAATGGAGGTAGAGAAAAACATGAAGAAGAAGCATCGAG
GTTCGTAAATGGGGTGTCTCTGACACTCATGGAGAGATCCTTATGTGTGTCCCAGTGATA
TGGAAGCAAAAATAAAATAAAAAAATTATAAACTTAGTGTCTTGGCAATATAAAGGATTT
GGTTGACTTGCTCTTATTCACTCTAAAATTTGCACATCGATTGGCTAATACGGCTCATCC
ACATTTGCATCGACTGGCTCCGATGTGACACGCATACAATTATTACTATTATTTATTTGA
GGAGCTTGTCACTGCAATTTCATTTCATAATAGAAAAGTAAACGATGAACAGCATCCAGG
CTTAAGGGTTCCAAATCTCAAACCAGAGAGGCACACATGACTCCTCAGTAGTATGAAAAC
GGAAATATTATGTGTAAAACTACATCATACAGTAGTCTCGGGTGTAACAAACTTACTGCA
AAATAGGCACAAGAAACTCAAATTAGATAGGAAGATAACTAGTCTCAGGTCCAGCGGCCT
TATTATGCTTCATATCAAATACTATAACTTTGGTCTCCTCTAAAGTAAACACCTTATCCA
TAAGGATTTGGTAAATGTCATCCAACACATCAAGTATATCAATAACTAATCTAATATCAA
ACATTCTAGTGCCCAAACTGTTCTTTTTTGTAGAAATAACAATAGATTTTTATCCCCATT
TACACCACAAAAAAACACATCCCGTTAGGGTTCCTCTTTCCCTCTCCCATATGCGGTGGC
TAGAGTACTCATCCCCTTCAAACTTCGACGAGCACGTGGATCCACCTGCCATGTACCAGT
TGCTGAGGCAGTCGATGGCCGGGAGGGGGTTTCAGTGCCTCGGTTCCGACTAGTAGTTCA
TCTTAGGTTTTTTTTTTCTTGCAAGGGTGATGTTCTAGCGGATAGCGGTGCTTCATCTTT
GAATTGGTCTTCCGGACTGCTATCCTACTTGAGTTCATCCATTGGAACGGAGTGATGGAG
CTTCGATGTATATTCTTGTCATATTCTTAAGGCGACAAGGTTAGGCTTTTCTTGTCGTGT
GTGCGCATCGGTCAAATTTGGTGTGAGGTGCTTCAAATCGATTAAGGGTTCTATGGCAAC
AACTGTGGATAGGGGTGTTTGTCTTTAGGGGCACATGCGTATAGACTTCTTGGCTATCAT
CAATAAGGTCAAGCCGACTTCAGTAGGATGCAACGATAACGACGCCTAGTGCTCATTCTG
ACGGCGATAGTGGCTGTTCGATGGCACGAGGTCCTCGATGTATTTTTATTATTATGTTTA
GGGTTTTATTCTTATGAACCTTTATAATAGATGTGGGTCTTCTTTGCAAAAAAATGTCCT
TACCCATGTATCACCTCATTAGAGCATCTCCAACGCCGACCCTCAAACCTTTCGCCTTGG
CCCACCAAAAAAACCCACCCGTCCTTCCCGTGTTTTCCATCCCACGCGTCGCGTCGCTTC
CGCGTGCCATATTCATGCCTCCATAGAACATGCAGTGGTCGTCATTGAAGCCACGATTTG
ACTGTACGGGAAGGCAGTGTAGACGAACGCGACCTCTCGGGCATCGCCACTTCAATGCGG
ACGCCGCGTCCCGAGAAACCAACTCCGGCAGTTGCGCCGCATTAAAACAGGCTGACCGCC
CCATCGCATGGCAGGGCCGCAGCTATTTTAGCCGCTCTCAGGCTCATCCAAAGAACCACA
CCGTCCTCCACCCCCTCGCCGATTCTTTCCTTCTCTTCGACCTTTACATTCTCTTCGAGC
CCAACTAGTGGCGATGTCGAAGTCCTAGTTATCCACACCGGCAAGCGGGACCGATGGGAG
CAGATCGTCGAGCGGATATTGGCGCCGCCACCCTTGCTCACCGGGGCCATCGGCATCCAC
GACGGCGGGTTCTTCCGGCAAGGAGGAGATAGTCATCTCGTCCGACAACGAGAAGGAGCA
GTCGTAGCAACGGTCACGTGTGTTGTCCGAGGCGGCGGTTACGGGCGAAGAATTCGTCCA
ATGGATGAAGATCATCACGAAGCGTTCGCTCCATCAGATGGGACCAGCGCCACCAACAAT
GGCACACATGAAGGAGGGGCCAGCGTTCCCGCCGCGGGTCCACGTTAAGCACGAGCCGGC
ATCCCCACTCCGGCAGGTGAACGACGAGCCGACATCCTCACTGCGCAATAGCAACCTTCA
CATCGGCAGCTCCGTGAAACAGGAGCTCGCGTCCCTAGCGCCTCCGCGGCGTGATACGGA
AGCAGGCATTGTCCTTGCTGCGCAACGCAACCGCTACGCATGGATCCACGGGCCATCACC
ATCACCTCGACGCCATCGCCCTCAGATAAAAGAGGCGGTGCCGCCCGCGATCGCCAAGGC
TCGTGGCCACATCCTCCACTACCCGAGAGGCGAAGGTTTTGGTGATCCCTCCGGCTCTTG
GGCCATGGTGTCCGAGGCCGAGCGCATGACGCGGCAGGAGAAAAGGTACGACTGGCACAA
TGATGGCCTCCGCTCCGCGTTTGCCAAGACGGATGTGCGCCAGAATGAGTCTGCAGTGAC
CCAGACGTCGCCGTGGCGTGGGCGCTTGACCTATCACCACCACGGGGACGACCGCCAGGC
GTCGCCGACGCCTTGAGGGCGAGCTTGCCAAGATCGGCAAGGAGTGGTCGCTTAGCAACT
GCTCAACCAACACCGGTCGCGGCAAGGTCGCAGCGGCACTCCGCATGACGCAGTAGGAGG
TGGAGCGGCTCCTCCATGAGTGGCACGCATCCGCCGGACAAGGCTGCCACGCCCCGCGGC
GTCGTTACGCTGCTGGAGGGACCACGACGACGATGACGACACTGATGAAGACAACGGTGC
AGCAGGGTAGGGCGGCCACGCGTGCAAGGTGGTCGTGTGGTATAGGGTTTAGGTGTTTTT
TTAGTTTTTTAGTTAAATTATACGAACTTGATTGAAATCTGTTTTGATGGATTGAATTTC
ATCCTATTGGTATGAATTGTTGGCCGGATATATGCGGCTAGCGTTGGAACATCGTCATGT
CTCATTCGTGTCTATGGATTGGTCCCTGTTTGCAAACGGATGCGAGAAGAAATTTACGCG
TTGCCATTGAATATGCTCTTATTCTTATCATTAGTATATATTTATTTTTCTTTTCCTACT
ACTCCCTCCGTTACAAAATATAAGACATTTTAGAGATTTCACTAGGAGANNNNNNNCGGA
GCAAAATGAATAAATCTACACTTTAAAATATGTCTAAATACATCCGTATGTAGTTTATAG
TGCAATTTCTAAAAGGTCTTATATTTAGGAACGAAGGGAGTAGTATATATTTATTTTTCT
CTTCCTACTAGTGACTTTAGACATGAAATTAAAAGTTAAAAGCATCTCCTCCTAACAACT
CTTTCTCTTTAGCATACAATTATTGTGACTGGAACTCTATGTTTGACCCGGCGGCCGTGG
AAGATGCAGTGAGCTCAGACGTGAAGATAAGGATAACAGCAACCAACCAACGAACCAACA
ACCTCCGTTCACCGAGACGCTGATGCGATTTGCCAATCGCCGGAGGACGTCCACGACAAA
TTCCCCCCTCCCCGAAGGTCGTCTCTATCGGCGTTAAACAAAGGCACCGGCGTGCTCCAT
AGACTACTTTACTACGCGCCTTGACACACGTTCTACAGCGAGCTCCTGTCACTGACAAGT
GAGCCATGGGTGCCTCTGACCGCACGTGTCAGAGAGAGAGATACATATAACAACGGTCTG
CTAGGTCCTCTGGCGGAGTAGTTTAGTGATACAGTACTCGTGTATGGGCAATCGTGTATG
AGTAGGAGAGCTCGCTCCCCGTCCGTTTGGGTGGGGAGTGGTGACGCCGACAGCGAGATG
GAAACCGACACGTTTCGTTCGCGTTGGAAACAATATATTGGCCTAGTTTTCTACCCCCAT
CAAATTTATCGCCTGCGTGCGTGGTACTACTAGAACCGCAGAGCCGCTCGTGGATAAGCT
ATTTTTCTCTAATACTCCCTTCTTTCGGGTTTATAGGACTCAAATCTGAAATTTCATCAA
CCAAGATGAATTGTGAGACATTAGTTTTAACTAGCCAATGCAATATTTCTCACATATGCA
ATTTCCAAGGCAATAAGTATAGCATCCTTCCTTTCATTAGACTTGCATGGTGGATGTAGA
AAACGATGCATGCATAGCCACTCATCTCCTTTCTTTAAACTTTATGAATTAAATATGGCA
TGAGACTCAAAGCACTTTAACTCACTTAGACTCAAAAT