Map Locations of contig_85109 (9238 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_85109

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_79455 2 292 bp MLOC_79455.1 Available Available None





CDS Structure of MLOC_79455






Contig Sequence (9238 bp)

>contig_85109 9238 assembly3_WGSMorex_rbca.fasta
CGAAGTTATTACGGTAATCATAAGTAGGTTTTTAGTTCAAGTAAGAACAACACCTTATAA
CTGGTCCACCCACATATCAAATCATCAAAGTAGCGAATGCAAATCAACTTAAAATGATGA
ACATGAGTAGATAAAAATTCACATGTGTCCTCGGGAGCCTTGCTTTATATAAGATAACTT
TCAGGTCTGTCCTTTGCTATAAAAAGGATTGGGCTACCTTGCTACACATTTTCTACTATT
GTTACTTGTCACTTGTTATGAATTATCTTCCTACAAAACCATATATCGCTGTTACTTACA
ACACTTGTAGAGAATTCCTTGCTGAAAACTACTTNNNNNNNNNNNNNNNNNNNCGTTGGG
TTCGACACTCTTATTGAAATGACTATGATTGATCCCCTATACTTCTGGGTTATCAACTAC
CCATTTGCAAGCTGATACAATATAAAGATGATGCATGCCCAAGTCTTGCGCCAACGAGAA
AGCCTCTCGGCAGGCTAAATCTTCTAGAGTAGGAGGATCAACGATGCCACGAATCACTAG
CACTGAAGACCCAAGATAGTTACCATCTCGGTCTCGACAAATTGTTGCTGCTATGCCCAC
GTTGTGCTCTCCACTAATAATCCCCCGTAAACATTAATTTTTATTTATCCTGTGGTAGGC
GTGATCTAGTGGCGTTGCCCAATATTGCATGTAGCCCGAATCATATTAGGTCGTTGTGGT
GTTCCCAATGGGTGATCCAGTTCCGAAATAAAGCTTGAAAAAAAACTATGAGTTCCATAC
GGGCTTTTGATTAATCCTTTCATGAATAAGCTTTCTTCTTGTATACCATATTGCCCAAAG
AGTGTTTGACATTCGTGTGAATTCTTCGTGGCTTCGGACATCTATCATAGAAAAGAGCTG
GTTCTTATCATCTCTTTCCGTTGTTTCGATCATATGTTCCAAAAGGTCATGGTCCACTAG
AACCCATACACAACATGCCATGGTGCACTTAATGAGGCTATGTCGCCATGAGTGTTGAGC
CCCACATGTAAAACATTGGTCATGGTGTGCTTTCGAACATCCTCCATCGGCAACAAATTC
TGTGATAATCTCCATAAGGAAACTTCTATTTTTGTAGGCACTGAGATTTTCCAAAGAGTG
GACCAGGATTTCTCAATTCCTGGGCTTTTTGAGGAGCCAACTCCATTTTCTAGCCAGTCT
TCCTGTCGCTTCTTGATAGCCACGAGCATTCTATAAGCTATGCGAACCAAGAAGACCCCA
TTCTTTTTGAAGTTCCATGACCAAAAATCATCTATAGCCCTCGTGCATACTAGAATCTGC
AAGATAGCAGTCGATTGTAAGGCAAAACAACATGATCAATAAATTGTGCATTCCATCTTG
CATTACACGGATCCAACTGTTCGGAGACCAACTGAGACAGATCTGTAGTAAGTGACACAA
TTTATCTCATATTTTCTGCTCGCAGGATCCAATTCATATCCCAAATATTCGTTCAGTCCC
AATCCTCCTAATGAGTCCTCTCCAAAGTATCGCGTCCATCAATGACCGATCGCCATAGTT
GCAACAGATGATTGCCTAATTCAGCCGATAGGAATTCAGTGTTGGGATAATACACTGCTT
TTAAAATTCTAGCACTCAATGACTCTAAGTTCTTAAGTATCCGCCAAGCCTGCCTAGCTA
GGAGATCTAGGTTGAAAATTTTAAAATCTCGAAAGCCTAGTCCTCTCATGTATTTAGGCA
TGTGTCCGAGGAGATCTAATAAGATTTTGATTCTCCTTCTTTGTTGTTCCACCGGAAAGC
TTTGATCATGAACGTAGTTGCTCATATATCCCTCTATAAAACGTTCATCAACTAATTGCT
CTCACCCACGACGTTGTGGGGTCAGCCACACCACGCATGCTTTTCCTTTTTTTAGAAATC
TCGCCTTCCTTATTCATTCAAAGAACATGGAATAGGTAGAATGTTCGTGTCATGGGGGGA
GCCAAGCCACACATGTCTACCTTCACCTAAATCACAAGCAAATTTTGCAAAATTAATGGC
TTCAACACTAAGACCCCTAGTCTCAATAGAAAAAGACCTAGACTGAAATCTATTACATCG
ATACTTGATCTCTTGATAAATAGTTACATTGGGTCCTCCTGTCCCCCTAGTGATGTCATT
AACCACCTCCTGACAGGATGAAGCAACACAAATGTTGTGTTTGTCGAGGTCCTCAGCGGG
AGATAAAGCTTCTCGGTAGGCATAAGACTCCCATATAGCATGATCATTGGATCCCCGGAA
AACCACAGCCGAAGACCCCAAGTAGAGGCCAATGTGATCACGGCAAATGGCCGCCACCAC
TCCTCCATGGAATAGGCTTGAAACAATCCCTAAAACATTGATCTTGATGGACCCTAGTGG
AGGGGGACTCCATGATGCCTCCGGTAGCTGAACTGCTGCTGACAGGCCTCTCGTAGTGCT
GCTTGCTGCGTGTCCCAGCTCTGCAAGAAAATTATCAATTAAGGTCTTCGTTTGCTGTGG
GCTTTGGAAGATAGCTTCATATACCACCTTGCGCCTTGCATACCAGATGGACCACATGGT
AACAACCATCCGATAGAAGCTATGATGGTCCAAAGAATCACTAAGCTCGAAGAGCCAGCG
CCTAGCATTCAGTTCAATGTTACTTGCCATTTGAGAGACGATCCCCTCGTATGTAAGCGC
CCATACACATCTGGCCATGGTACAAGAGAGCACAGCATGTCGCCAAGAATCTGGGCCGCC
GCAAAGTGGGCATACATCCTGATATCCTATCTTCCTATGCTTCAGCACATCTGTAGACGG
GAGAGAATGATGCGCCAATCTTCACAGAAAAAATCTAACTTTGGATGGGACCGATAGCTT
CCACAGGGAGCACCACAATTTCTCATCCCTCAGGGAATGAGAGGAGCCGATGCGTACCTC
AAGCCAATCCTCCTGCCGCAATTTGGTCTACAGAAGCAGCTTCTTGGCCGACGAGACAGA
AAATTTACCCTTTTTGTCATGAAACCATGCCTAGGAATTTGTGGTATTGTTAGTGCAAAT
CAGAATCTTCAGGATGGCAATCGGATCAATCGGTAGGAAAACTGACCGTACGAATCCTTC
ATTCCATGAAGCCGTTGCTGGGGAAAGCAATTCGGCCACCTTGGTGGTGGTAGTGGGGGG
GTTGATGTCAAAAAAGTGATCGGACGGGGTGTAGTTTCCTTCGGGATCCAATTGTCATCC
CATATGTTTGTAGTCTGTCCATTCCCTATCCGCGTGATGAGTCCCTGCTTAAGTAGACCC
CGTCCCACGATGATGGCTCACCAAATCTGAGATGGTTTGGACCCAATTTCAGCATCTAAG
ATTGTGCCATTGGGGAAGTATGATGCCCTCAATATTCTAGCACTCAAAGTTTTAGGTTCC
CGTAATAACCTCCAAGACTGTCTTGCGAGCAGAGCCAAATTGAAGATCTCCAAGTCTTTA
AATCCTAGACCCCCAAGATTCTTTGGTCGAGTCATGATGTCCCAAGAGACCCATGCATGT
TTACGATCTCCTTGCTTGCAACCCCACTAGAACCTCTGAATGGTGGATTTTGTATGATCA
CATAGTCCTCGTGGAATCTTGAAGCAGGACATCAAGAAAACTGGGATGGCTTGGGCTACA
GATTTGATTAACAGATCCTTACCCCCAGCCGAGAGGCACTTGCTCATCCACCCTTTCACC
TTGTCCCAAACTCTGTCCGAAAGGAACTTAAAAGTTCCCTTCTTCGAGTGGCCGACATCT
GTTGGCATCCCCAGATATTGATCACTAAGAGACTCATTGGGCACCTACACATATCCTTTT
ACCGCAATTCTGATAGTTTCTGGGCAGCCTTTATTAAAAAAGATAGAAGACTTCTCTCAA
CTTATCCGCTGTCCCGAGGCCATACGATATGAATCCAACAGGTTTGATACCTCCTCCGTT
CCATTAACACTTGCCCTGAAGAACAGCAGGCCGTCATCCGTGAATAAAAGGTGGTTCACC
GCCGGGGACATTGGTGCCACCTTAAAGTCGCTGATCTGGGACGACTGGTTTTGAGATTTT
AAGAGGCCAGAGAGGTCATCTGCTGCTAACAGGAAAATGTATGGAGAGATAGGATCTCCC
TGTCAAATACCTCAAGTAGGTTAAATTGTTCGGATATGTTACCATTGAACATTACTAAAA
ATGAGACCGAGCTAAGCATATTCATAATTACCTACACCCATGGTGCCGCAAAGCCCAACT
TCAACATGATTGCTTCTAGATATGTCCATTCCACCGATCATATGCTTTCATCATATCAAG
TTTCAGAGCAGCATAGCTATTTCTCTTAGCTCGATTCCCCTTCATATAGTGTAAGCACTC
ATAGGCAGATATAATATTCTCAGTGATTTGCCTACCGAGAACAAATTCCGATTGTTCTTC
AGAGATAATCTCCGGAAGAAACATCTTGAGACGGTTGGCAAGTACCTTAGAGGCTATCTT
ATAGAGTACATTGCAAAGACTGATGGGACGAAATTGAGACCGTGATGTAGGATTTTGTAC
CTTGGGAATCAAAACCAACAAAGTATCATTTATCCCCTCATGGCTCTCTTCTCCTCGAAC
AATGCTCTACACCACTTCCGTTACATACGGACCACAAATATCCCAATGTTTCTGAAAAAA
TGAGCTCGGAACCCATTTGGCCCTGGGGACTTTGTTGGGAACATTTGTAACAAAGCCGTT
TTGACCTCCATTGGATCGTAAGGGGCCAGCAGAGTGCTATTCATCGTCGGAGTAACTTTG
AGAGGGACATGTTGCAGAACATTTTCCACCCCCCTGGATCCCTTCTGATGTGTACACGTG
CTTGTAATACTCGATCGCCAGCTATTGCATCTCAGTCACTTCCTCAGTTATTTGCCCGCC
CGGCCATTGCAATGCTTTGATAAAATTATTTTGATGTCTCATTGATGCCCTCATGTGGAA
AAACCTGGTGTTGCGGTCCCCTTCAGCAAGACATTGAACACGAGACCGCTTCACGAAGAT
ATAACTCGATTAATCTATCATTGATTTTTGTTTCAGCATGAGAAGGGCCCGAACGGGTTG
TGTTGCACCGCAAGCGTTCCAACTCCTTATTCAAACTTCGTATCTCCCCTCTGACACTAC
AAAAGGTAGATTTAGCCGAGGTTCCAAGATTGTAAGCTAGATCCTCCAACTTTGCTCGCA
CGGCGTTCGCCGAGAGGTTTTGATCGTAAGATTGCCAAAAATATGAGACTGTCGGCTTGA
GTTCAATGTGGGAGTCCCACATCACCTCATACCTAAACAACTTCCCATTCAACCTGGCCG
GTGGTTCGTCAAGTTGAATTCTAAGGGCCGAGTGATCTGAAGTTTCCATGGTGAGATGCT
CAACTATCGTTGATGGAAAACGAGAGTTCCAATCAGGGGTGCCTAGAGCTCTCTCTAGCC
GCACCTGGGTATACGAACCACTTGCCACTCTTTTTTCAAAAGTCCATTTCGTCTCCTTGA
AGCCTAAGTCCAAGAGTTCAAAAACATCAACTGCTTCGCGGAATCCTTGAATGTGAGATT
GGCTCCTAGAACCGATCCCCACATGTTCATCATGTTTTAGGACTTGATTAAAGTCATCAA
TGCAAAGCCATGGCAGGTCTTGCAACATGGACAAAATTTTCATTGTGTCCCATGTGTGAT
GACGAGAGTGAGTGCGGGCATCACCATAGAAACAAGTGAGTCTCCAAGGATCGCTACCCG
GATCAGAGATTTTACAGTCAATATGGTACTTTGAGTAACCTAAAATTTCAAGTTGTATAT
CATCGTTCCAAAATAAATCTAATCCTCCACTCCGACCGGAGGAATCAACAATAAAGGCAT
TATCGAAACCTAAACTGCTCTTCAACGTTTTATTCCTACTCCTAGTGATTTGGGTTTCAA
CAATGCCGAGTACTCTAGGGGCAAACTTTTGTGCTATCTCGCGACGCTCTTGGACTTTCG
GGGCGTTGCCAATACCCCGACAGTTCCAACATAAGAGATTCATTGTCCCCGGCGGTCCTC
CAACGTGGAGGCCGCTGATTGTGCATTTTGTTGTTTGTTACCTTCTAGAGACTTCTTGAT
TCCTCCACTATTGATCCTCTCAGCTACCTGACCCGATCGCATGTGCTTTGGGTCTCGTAT
CGGGGGAGGGCTTGGAGGCACAACATCCCCTCCCTTACTAGCTAAGACGAGCTCATTCCC
AGAGTTGACATTCGTCTCACGTCTTGCGGCCACCTCGTCCAAGGCCCTCTTCCTGTTATC
CTTAGTTGGATCCATCTCCACATCATCTGATTCCTGTTTGTCCTGGGCATCAGCCTCGGT
ATTAACCTCCTGTCCCTCACCATCAACATTCATGTCATGCTTCCCTTGTCTCTGGTTGTA
GTTCTGGTGTCTCGTACCCCAAGCTGTAGTGGCCGGGGCACACAAGTTTTTGAAGATCAA
AGCCGACGGAGGATGCACCCCGTCTCCATGCTCTTTGAATTCGTGGCCCATCATCCCGCA
AACTTGGTACCAGTCCGGCAGCCGCTCATATTTAACCACAAAAATTTCTCTCGCGCCCCC
TTCGATAATTGAGGTAGCCCTCTTCAGTTGATTGTGCACGTCCAAGCGCACCCTTACCCT
AAAGAAGTTCCCTTCAAAATCAAAGGAGGATGGCTCTGAATTCACAAGCTCGCCCAGTTT
GGAAGCAAGAGCTTTCACTTTCCCATGGTAAGCTATTGGCAGGTCAATGATCTAGGCCCA
GACCTCAAACTTGTAAAGCTCTATCGAAGTAGGCTTGGTGTACCCATCGTACGGAGCTAT
GATCACACGATTGCCTCTGAAGTGCCACGGCCCCCCATGGGTGACCTTCTCCCAAACTCC
CAGGTAGTTAAACTGCATCATGAACAGGTTCTCTTCCAGAGTCTTGATTTTGACTGTCCT
CGCAAGATCCCACGCCGTTCTCATGTTTCGGAAAAACCACCAGGAGCTGAACCCCTTATC
CATATGAACTTGAACCAAAATCATCCAGCGGATTTCTTCCTCCGCCGGTGCGTCAGATTC
TTCAAAAACAATGTCGTCGAGATCATCTTCTTGCAACCCAAGCTCTTTAATCAGATCCTC
AACATTGCCACCCCCTCCTGCCGATGATGATGGCGGGTCCCCACGTCGCGCCATACTGAC
AAAAAACCCTAAGAAGATCGATCTAGCTCTCGTCGACAAGCAACCTCCTCCCGTACAACA
AGGATTACCCATTCTTTGGCAGAGGATACCCTCAGTGCTAGAGTTACCGGAAGGGGGTAT
TGATAGTCTCAACATCGCCTCAGGCTATGAGTGGAATAAATCCTAACGCGAGGCCTCGTT
TGGTTAGGGTGGATTAGGAGGGATTTGAGTGGATTTTCCTCGCGTGGGCCACAAACCTCG
CAAAACCCGGAAGGCCCGTTTGGTGTGCGGGATTTCCTCGGCCCAATCCCTCTCTTACCC
CTCCGATCCCTCACTTTCCACGAGGTTCAGAACCCTCGAGGGTGGCCTCGTGGATCCGTC
GCCCGACTCCTCCTCTACACGCTGCGAGCCACCGCCGCCGCCATCTGACTCCTCCTCGAC
ACCTCGTCGCCCGACCCCTCGACGCCAGCGAACTCCTCCGGTGACCTCAACTGGATTTTC
CCCCGGTCGTAAGTCATTGTTGCCCCTCCCCTTCTCCCCCTCCTCCCCCTCCTGTCCCGA
TTTTGGATATCTGCATTCGATCCGTCGATTCCGCGGTGGATGCTGCACCTGCACGGGCAT
CAATAGTGAGATCGAAAGGTGAAAAGAAGAGGGTGGGGAGAATGATTGAGGTGACGAGGA
ATCAGTTGTCGGTCTGATGGTGATGGTGTGTGTTCACTCTGACGGTGATGGTTTGATTCC
ATTGGGATCCGGTGATGGTGTGTGTTGACGGGCGCAGATACATGATGGAGGACTATGCGG
CTGGACATGCCAAACACTTGGAGTTTCTGATGCGCGAGCTCGAGATGCGCAAGCTTGTAC
ACGTAGCGACCAACGCAGTCGCGCTCCGGGCCACTCCAAGGGTGGGTGATACGAGGGAGA
CCTCCTGTCATGTCTGTCAGGATGATTTCAAGGAGGAGGACAAGCTGAGGGCGATGTCGT
GTGCCCACACTTTCCATCAGCGTTGTATCTTTAGGGTGCTCGGTGTTAACCGTCTGTGCC
CAGTCTGCGGCTACCAACTTCCGGGGGACGACGAGATGCCTTGAAACCGGTCATGAAAGA
TTGATCCTTTCTTATGCAACCTTATATGTATAATTCATAATTATGCGCTGCTTTATCTAT
CCCTAGTGCAGATCAGCAACTTCTGACATCTCAGATATATATGTTGCTCACCTGATTGTG
ATTGTCATCAGCAACTGCACTTCCATAAACCATTATGTTGCTCTGCTCTGTCGTGTGATC
GTTGCACACATAACCTGGTTTTGCAGCCTATATAATGTTACAACATTTAGGAAGTTCCTT
TCTGCATAGACATCGTAAAGAAGTTAGTGGCCTTTGTCTGCATCGGATCAATCAATTTAT
GTGCTAACATTATGCAATTAAAACATATCACATTTGTACTTCTCTTTTAGGGCATATCAC
ATTTGTACTTCTCTAAATAGTTTGATCTTTGGTTATCTTGGTGAAAATGCTATTTGATTC
ACTAATCCATGGTTGTGTGGTGTTCTGAGTTTTCTCTTGACCTTGTTTTTATTTTGACAG
CCTGCCGCTCGGGTTCTTGTTGGGGTGGATGAGTTGCCTCCATCTTGGGATCCAGTTGTG
ACGCCTAACTTCGGTACTCCTTGGCCTCTTATGATTTTCTATCACGTCTCTATGAAAAAC
TTGCTTCAAGTCAAGAAACCGTCAAATGTATTTCTTATTTCTTGCATGATTATTCTAATT
TTAGTGTCGAGATGAATTCCGAGATAATCTCACTCACAACATTTATTATCCTGCTTGTTG
CTTGTCGATTCTAGTTTTAGTGTCGAGATGAATTCCGAAATCATCGACCGAATTCGGAAG
AGAAGAAGAGAGGATGATGAAGACCTGATGTCTTTCATTTGGCCCATATTGCATCGGATG
CGTAAAAGAGGATCAATCGAGAGAAAGCAGCGACATAGCTCCATCCTATATGGAAAGAAG
CGTGTCCATGATATTCTTACAGGGCATATTAAAAACTGCCTCGTAGCTTATAGGATGG