Contig Data
morexGenes
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Map Locations of contig_8396 (5496 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_8396

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_79216 9 1674 bp AK375784 Not available Available None
MLOC_79215 1 496 bp None Not available Available None





CDS Structure of MLOC_79216






CDS Structure of MLOC_79215






Contig Sequence (5496 bp)

>contig_8396 5496 assembly3_WGSMorex_rbca.fasta
TGCAGCAGGATCAGCCAGGTCTATAAAAATAATTACAGACATAAGGAACATTGTATTATA
TAAGAAAGAAAAGCAAGTGAAAAGAGAAAATAGAAGCTGCATCATACAGAACACGTGAAA
ACGCATCAACAGATCGACGAACATACCAACAGAAAGCAGGGTTGTTCCGCGCCCATCAGC
AACCAAGGGAGAAGACTGTGGCCGAAGCGAAATGTCCACCGCATAAGTAGACACAGCATG
GCGGCCGCCGTCCCCTATACCATATGGCACATCCACGACCAGACGGAGTTGCAACCGAAG
CAGGAACTGCCGGCAAAACAGCCAGCACACCATGGCGAGCAGTCCCCATACCTCTCCCAC
CACCACGTGATACAGTAGCAACAGATCCACCGCGAACACATCGGGCAGACGCCCCGGCCT
TGAGAGCGGAAGAGCCGAAAGAAGAAAGGAAGAATCCACCACCAAATACACCAAATTCTC
TAGGCGGTCAAAGGGGCGGCATGGATATGATAACCGCCTAAGCAAATATATGTGTCAGCA
TCCAACCATGCCCGCAATTGGAAGTGTAGGAAACGTGGCAAAAAAGTACGCATCAACACA
AAACACAACCACGCAGCAAATATAAGGGCGATGAGCCGAACAGACAGGTCTAGAACCAAA
AACCAAGAAGAAATCCCAGTACAAAACCGGAGGAGAACCAGAGGGGTCAAAGGAAGACGT
GTCAATACATCAGAGAACATGCTGGAGCTCTCAAACTCATGCCAGTGACGCTAGCCTAGT
CAGTTTTATTTCTGTAATATATAACAAGGTTTACATACTTACATAAGCTCCTGTAGATAA
ACTGCAGAGCTCCACAACCACCCTTCTGATCATCAGTCAAGCTACTGTCCCTAGTCACGA
GTTTCTACAGAAATATCCATACCATATGAATATCCACCTATGGAAATCTTGGTTGTGGTA
TAGTTATATTAGTAGATTAGTTGGACAAACAGACCGATTCTTGTTCCACCAACTAGAAAC
TCTGCACTCGGTGGATCGCTGCCAAGAGGTTAAAGAGACAGGACAGCGCGATCGGGAACC
AGCTCAGGAAAGCCAGGACGGTAGCGGCCCTGAAGCTTGGGCAGTGGTTCTCCGAGCACA
TTCGCATGTCGTCAATGAGAAAGGTGATGGCTGCCGACCCACTCGCTGCAGTAAAAATCA
GCGCTCCTATGACCTTCAGATGAGATGTCGGGTGTGTTAGAGCCGAATCTTTGTGCGTTT
TAGGAGAAAAAAAACCGCATGTGATTGTTAAATGATTCTTTGCTTGTTCATGTATGTAAA
ATATTTTTAGTGTATGAGCTCACAAGAATGGCAGGGAAAATGTGACTTACCCAGTCCCCA
ATGAAAAAGATGATGGTAAGTCGGGGAGTCCGGAGTGAGCGTTTGACAAGAAGCGCGTAT
GCACCAATTATGGCCAGGAGGAAGCTCCACAGGAATTGCAATGTCGCTGCTGCTACAAGG
TAGCTGGTGAAAAGAACAACTGTGAGTTCATCTATGCAAGAAAACCAACCCCGTGTTTCG
AGTTCCAAAAGCGATAACCTAAGTGAACAAAACTATCTAATTGCATCAAAGAAATAAATT
TAGATACATCTAATTTCTACTGGAAACCTATCCCGCTCCCGTATACCCTCTTCACATAAC
ATCAGTTGCAAATCTCAACGGGAGATGACGCACTTTATATAGAACAGATTGCTACAGGTG
GACCAGGTATCTCTGATTACTTAGCATGGAACTACACAAAGAATGGCCTCTGATTATGCG
GCGTCCCAGTATATGGCAGAATATGGAACTTTGTCCAGCAGAGGAGAACTGGTACAGGCA
TCTCCAAGCCGGTTGCACATTGGAGGTCGCCGGCGGAGGGATATAACGCCTTCATGGGAA
AGGAATGGTTTAGTCCTGGCAAATGTGGTATGGCAGAAGCTTGCTATGTGTTTAACAAGG
TGCGACCACAGAATTATCACACCATGTTTGTCATCCACAAGGAATGCAGTTATGACACTG
GCTCGCCTCTCTTTCTGTCACTTAGCCTGGATGCTCTTAGAAAATGGGATCCAGGAGTTC
TTCTTGTACTTAAGAGTTAAGACTTAATTCAGAGATGGGTTTGAACTACACTTCCTTGAT
AAAGTATGTTGCTGCAAAACAACGGGGCCCTGGGTTACTAATTTTTTTTCTGCAACTTGC
TTATGTAGAGTGCATCAGAGAAGCATACAACTTGCAGTTCTCACGAACCTCTCTATTCCA
AGGGATCCTGTAATTTGTAGTATTTGGGTCCGGCGGCTCCACAAGCATGTCTTTGTTTTC
TATGCTTTGAACCCTAGTAGTCTTCAAGTGATTGATTTTCATTGGCTACAGAGACTAGAC
AAATGCAAGAATATATCTCGGCTGCTCCGTCTGGGCCGCAAGTTTCAGTACGGATTGGTA
GCAGAAATGAGAGGAGCTTGGGCAATTAGGACTGATGGACCTACATACTTGAGCAGAACT
AAAGGGAGTTCGATCTGTCTTCGACAACTAGCATGCATAAATTTCTCGCACATATGAGCT
GACCTCTTCTGATAAAGACCTTATTGGAAACGGGACTCCGGTTTGCGTGTATACGCAGAT
GCATTGAGAAAGGGGCATATACACATATCAACCTCCGTGGTATCTTTGTTCTTATACAAA
TGAGGATGATAATGCGTGCTCCCTGTTCAATGATGTATGCCTCGTTAACTGTAGCCTCTT
GAGCCAAAGTTCTGGGCCTAACATAGTTGGTGGTTTTGCTATAGCTCTATCTTACGAGCT
GCTGGTCATTCTCGTACAAGCTTGCACTAGTGGATTTATCACTGATGGACAGGGAAAATT
GTTTATGGCTGCTATCCATTTCAGATATTGAGAATTTTTCATCTGAATGTTATTATCGCT
ATGAGCTTGCTAGTCTCAACATCTGCACCAGTGTCACTTGCTACCGATAATTGTTGTATT
ATGCAAGCATTCGAGTTCATGCAGCTTTATCGGATTGGGGACTATCATGTACTACTGTTG
TGCAGTTCAAGCATATATATGGTTCAGCGAAGAGAGAGCTGGTGCTTCAGAGCATACACA
TGTATCCAGATTCTGTCCTGGCAAGAACTATATATCCAGTCAGATATTCAGATTGTAATC
TCTTGTCGGTTTATTTAATATAAAGCGAAAAATGGATTCGAACCCGGCAGCTGCCCTTAA
ACCAGTGGCATAGCACAATCACCATCAGGCCAACTAAGCTGTTGTTAATACTCCCTATGT
ACCTAAATAATTGTAGTTGGGGAGAACTAGACGGGAGTAGTTATCAGTACGACACTCCTT
TCAGTTAGTGGCCACCACAAGACCAACTAAGCTCTTGTTAATATGTACTCAGTTATCAGC
ACGACACTCCTTTAAATTAGCGATCAACGGCCGTGTTGTAGTGTGAGCGCCGTCAATCGA
AACCTAGTAAGGGAAACCAAATTTGTCGAGTGGGAGAGAAATTGGGGGAGCACGTACGCA
CCGGTACGCGGTGACCACCTGGAAGTCATTCGTGGAAGCCATGAAGGCGACGGCGGCGGA
CGCGAGGAGGGCCTGCGCGAGGCGGTTCCCGAGCCCGCAGCGCGTCCCGGGCGCCCACAA
CAGGTCCTCCATCAGCACCCCGGGCGGCGGCGCGTTCCCGTTCCCCGCCTGCTCCGCCAC
AGCCGCAGCCGGAGCCAGCCCCTGTCCCTGCGCCTGCGCCACCATCGGGGCCGGATGCAC
CGCCGGATGACTAGCCCGCGCAATCATGCCACGCGCCCCTACTGAACTCAGCAAATAGCT
GGATACAGGATTTTTGGGGAGAAACTTAGGGTTCCGGAGACTGAGAGGAAGGGAAGGGGG
ATCGATAGCAGCAGGGGCATGCGAGTTGGGACCTCCTATTCTCGGCCAGCCGTCTCGTGC
TGTTAATAATTCGGGATACCAAAAGGTTCTAAATTTCAAAAAAGAAGTGAACTTTTAGAA
AAAATGTCCATGAATTCCGAAAAGGTTCAGGATTTCAATAAAATGTTTGAGAGCTTTAAA
AATGTTCATGGTTTAAGAGAATGTTCATGAAATTGTGAAAAATGGTCATGAATTTAAAAA
AAGTTAGCGAATTCGAACAACTTTAAATATTTAGGATAAATATTCAAGAATTTAAAAAAT
GTACAAATTTTCGAAAATTTGTTTGTGATTTAAAAAATTTCCCATGATTTCCAAAATATG
TTCACAAATTCGATAAATGTTTACTACAGTATTTTAGAAAATGTTCCCAAATTTGTAAAA
TTAATTCACGAGTTTAAAAAATGTTCTCAATTTCAAAAGAATGATGATGTATTTGCAAAA
TGTTCATGATTTCATAAAATGTTCAAATTTCAAAAGATGTTCACAAATTGAAAAAGAAAA
AAGAAAAAAGGAAAAAAAGAAAAGGAAAACATAAATGAAAAACGAAAAGAAAAAATGTAA
AAACGTAAGGGAAAAAAGTAATTCGGTCGGCTCATACAAACACCCAGCGTGTCTTGTGCT
CCAAATGGGAGTCGCCATGCAAGTTGGGCTGTTACAAATTGCACATCCTCTGTTTGTGCG
AAATTAATTATTAAAAATACTCCTTTGAAAGATCACTTTATTTTTTAAGGTTGCGATAAG
TGACGCATTATATGTGTATCATTTGTCGTAACTTGGTAGTTTTTTCCTTCGTAGATCCCT
TTATTCAAAACATTGTATCTTTTAAACCATGCATCTAAATCTCAAACCATTTTCACCGTC
AGATTTTGCACATCGATATTTTGTAAAAATAGATCACGTGTTGATAGATTTTGACGAAGT
TTTTATTCATGTTGTTTTTCTTCTTGTCTTCTCATCAGTTGTTTCTCTGTTTTTCTTCAG
TTTTGTTTTTAGTTTTAGTTGTTATGGTCATTCATTCCCATTTTCATGTGTCATTTTACC
AAGTCATTTTCATTTACATAGGTAGTATTTTTGTCCCTTTTTGCAGGAAGGTGAATGCAT
TTTTATCGAGTTCTTCTCTGCCAAGTAAACAAGGACACAAGTAAGCTTTATCTAACTCTA
GCACTTTTTTTCATGTATTTATATGATTTATACAAAAATGCAGCATGCATGTATAAATAA
AATCTCAGGGAAATGGAGGGCTGTGTGTTTCGTTACCTGAGATGGTTCACCTTGGGTGGC
TCCAGGTGAGTGTACTATGGATTGTAAGAGCATCTCCACTCCGCCCCCCCTCCAACAGGC
TCTCCCGGGCGACTTTTTTAGTGTCGATAGTGCGAAATCGGTCCAGTCGTGTCTCCAAGA
GGTTGTTTTTCTCGGCTCGGGCCGAAATTGGCTCCGGCTTTCCCATGCCGAACACAACGC
GCTGGGGGCGCTCGGGGACACCGACGGAAACCCTTTTGGCATGAAAAAATGATGGGCCCG
CCGAGTCAGCGACTCGCGCGCGGGCGTCGCGCTTGT