morexGenes - Barley RNA-seq Database

Contig contig_83904

Source Contig contig_83904

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_83904 (2292 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_83904

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_79210	1	845 bp	MLOC_79210.1	Available	Available	LOC_Os02g52830.1, FRAME:-1, EVALUE:1e-37, 13102.m06022 protein lipase, putative, expressed

CDS Structure of MLOC_79210

Contig Sequence (2292 bp)

>contig_83904 2292 assembly3_WGSMorex_rbca.fasta
AGACCCAAAGGTGGCAAAATTATTTGGGGATGCAGGAGATAACCATAAGTTGACTTCACA
TTGTGTCGCCTTGTTGAGATGTGGAAACCAGTTCTAAAGGTGTTAGAAAATTTACACAAC
CATGCAGATAATGTTGCCCAAAGAACAACCAACAGATAATGTTGCCCAAAGACATTGTGT
CGTCTTGCTGTGATGTGGAAGCCAAATATGGAAGATACAAGAACTGCTAATGGGCATTCA
AGGTCTTCGAGTGGGCAATTGGTAACTTACATCCATCACTTCAAAATTGAAATATTCAAT
GTGTTGCATGATCAACTTATTGTGGAGTTAAACAACCTCTTTGATGAAAGGTCTACTCAA
TTGTTGAGATGCATTGCCTGTCTTGATCCCAAGAATTCATTCTCCAATTATAGTGAAGAC
AAGCTAGTAGATCTTGCTAATATGTATGATGCTGACTTCTCTACATATGAAGTTACTTTT
GTCCTTAGAAACCAACTAGACTCATTCATTCGGGAAGCAAAAGCTGATCCACATTTGATG
AATTGCAATGATCTTGGTCATCTTGCCATTAATATGGTTAAAACTGATATGCACACAACT
TTTTCCTTGGTTTATCGTCTTATTGAGTTAGCATTGATTTTACGTGTTGCAACCGCAATA
GTGGAAAGAGCATTCTCAACAATGAGCATTATCAAGACTGGATTGAGGAACAAAATGGGT
GAAGATTGGATGGATCATAGAATGGTATGTTACATTGAGCGAGATGCATTTGTTACTATT
GAAGAATCAAAGATCATCGAGCGATTTCAAGGTTATTGCACACGTAAAGGCGTTTTGCCT
CATCCTAGAAGTAAGTTTTCACATTTTGCATCTATTATTAACTAGTTTTACCTGCTATAT
TATGCACTGGTTTGCATTTCGAAATTGATGATTGAAGGTTTAGTTTCTGCTATTGAAGAT
GTGGTCATGGGAGGCTCAGATCAACCAATACTTTGGTTTGATATAAATCTTTTGTATCAT
CTTCTATGCTACATATTGTATTTTGATTTGTCTTGCTTTATTGTCGATCCATCATGCAAC
AAATGCTGCCATTGGATATTATGTTTGGTTTCTTATTAGTAATGCAACATAGATTGACTT
TAGTATGCCTTGAAGCTAGAGTTTTTTCTAGATAGTTTTTAGCCCTTTGTTTCTCGTTCG
GGGAGTCAAACAATTCTGGGTCCGCCACTGGTTTCGATGGTTGCGGCATGGAATTGACCG
CCACTAGTGAGTCTTCGACGCAGGCGAGGGCGGCCAGGGGTGTGTCCGTCCATTCTGGCG
GGCGACAATGACGGGGGGTCGGGCAGGAAGAGTGCGATGCTTCCCTATTTATATTTACAA
GTGAGCAACTTAGAGCAAATATGAGGAGGAGGGGGGGGGGGTAATTTGGGAGAATAAAAG
GTAAATGTAGAAAAATAAAGTTTGGGGATGGGTTTAGATAGGTCTTTATTCCCAAACCAT
CATCCACATTAAGCGTTTGGGGATGACTAGCTAGAGATGCCCTAACCTTGTAATAGGAAG
GAGGGTGCGCAGATTGTAAGACGAACTATTAGTTACATATATATCCACATGATCATTTGC
TCAGACATTGAACACCGGAACATTAACAATGCAGACTACTTACATATGTTTAATCTGATT
CTGAACTTCTAGTATATGCACTAAATAAAGTTAAACTGGCTGCTCGGCCACCTCCAGCGG
GCCGAGGGACGCCGCCCCGAGCCTGGTGGCGTTGACGTAGTCCTGCGGCGCGTGCGGCGG
CAGCCCCGGCATCACCAGCGCGGCGACCCTGGCCAGCCGCATCAGCCACCCCTCGGCGTA
CTCGGGTCCCTCCGCGTAGCCGATGAGGAAGCTCCGGGCGAGCTCCCACCACGCGTTCAC
CAGCTTGGGCGCCACCGCCAGCACCGAGAAGTAGTTCTTGTTGGGCTCCTCCGCCGTAAC
CTGCTTTTCATTTTCAAAGGCGTCCGTCAGCGTCAGCGTCTCTTCTCCAACTCCAAAAGT
GCATTGCGATGAGGTTCTTGCTTCCAAGCCATGCTTTGCTCGATCGCCTTGCCTTACCTT
GGAAGTTTAGTCCTGTTACAGCATCACATGCATGCATTCCTTCTAGAGCAATGCTACATC
TACGTAAATGTTTACGTACGTTTACGTAATAGTCTGACTTGACAATAACTGATTGGATTA
AGAGGAGGATGAGGCTCACCCATCCCTGAAAATCAGGGGGGCATGTTTAGATTAGTTGGA
AGGTTTAATAAA