morexGenes - Barley RNA-seq Database

Contig contig_8313

Source Contig contig_8313

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_8313 (1826 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_8313

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_79050	1	1147 bp	MLOC_79050.1	Available	Available	LOC_Os11g24070.1, FRAME:-2, EVALUE:4e-23, 13111.m02293 protein LTPL10 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
MLOC_79049	1	535 bp	MLOC_79049.1	Available	Available	None

CDS Structure of MLOC_79050

CDS Structure of MLOC_79049

Contig Sequence (1826 bp)

>contig_8313 1826 assembly3_WGSMorex_rbca.fasta
CGATTCCTCTCAAAGGAAGTAAATATAAATTATAATTAACATCGATACAACAGAGTGTTG
GCCATGCAGAGCTGGCTCAACGTACGTACTTCTCTCTCTTTTTCTCCCACATGGAGATAA
TATATGAGATCATTTATTCATATATATGTGTGTGTGTGTGTGTGTGTGGTTGTGTAAATA
ACCTCAACGTACTCAGCGTCTCAGCATCGATAGCTGGAGCTATAGGCAGAAACGACGGCA
GCAAGTGGTCGATCAGTGAATCTTAGAGCAGTCGACGGAAGTGCTGATGGAGTAGGGGAC
GCTGACGCCGCACTTGGAGGGGATGCCGGCGGCCTTGCCAGCGTTTAACCCAGCGGCAGC
GCTCTTGATGCACTTGCACACCGCTTGCTTGTCAGCGGTGCTCTGCGCTGCGCCGGCCAA
TCTCTTGACGCCGCTGCAGCAGGCCGGAGGCAGGATGCCGCCGTTGCCGCTGGCATAGGA
AATGCAGGGGCGCAAGGCAGAGCTCACCTGACCGCAGGAGATGGCTGCGTCGGCGGCTAC
GAGGAGCATAGCGGCCACCATGGCGACCAGCACGAGCTGAGTAGCTGCAGAACGGGCCAT
TTCGATCAAGCTAGCAATAGTAGTGGTGGTGAGCTAAGCCGCAGATGATGAGATAGCTAG
ATTTGCTAAGTGATTGTACTGGTGGATCGTGGGGGATACATGAGCTTAAATAGTAGCCAA
CATGGGATTCCATTCAGAACAAACTGTGTCACGTATTGTGTCTACACGACCAATTCGGTT
GATGCCTACATGAATCTAGGTTGTGGGGTGTTGGAATTGAATTGTGGGTGTTAATGTATT
TAGGAGGTGGTTGGTTGTTGCCATTGGGTTGGGCCAATGGATGGACCAGTCATACATCCA
TGCGTTCTAGCGGTGGAATGTGATTGATTAGCGTCTGCACAACAGGTTAATGATGAGACG
AAGACATGTAGGCACTCTCACTGTTACCGACCATGGAGTAGTTGAGTGCATCTATGATGC
TGAGCACGACCAGTGAACTGTACCAACAGGATGCTGCATGTGGTTGTGTAGTGATAGCGT
CCGACTAGAATGAGATCAGCACCTAACGTGCGATCATGCCATCCATCATTCTGGATCATC
AGATGAATACTCAATGGCACAGATCAAGGATTGGTGAACATGATAAGACATCTTGCAAAT
AACCCATAGGCTTTTAGAGTTTAGTGCAGTTGATATCACTTCCTTGTTTTTTGTTAGATC
TGTATCGCTATTTACCAAATAAAAAGACTGCACAAGAGAAAACGCAGAAATATTGTATAT
ACGCCACTACAATTTCTTTTGGTTTTCATAATAATTATTTTTTAGAACTATTTTGCTGTT
CAAAACTGTGCAGCTAGTGGGATCACTGTATTATCTATACTTATACTAATTAAGCACTTC
TAATAAATTCTTACGTTAATTAGAATTTATGGACCGTTAATCTGGTGGGACAGAGTTATA
ACAGTGTGGATACTCCCAAGAAAATTCACCTATTGATTACAATTTACAGACCATTAATTT
GGTGGGACTAAGTTATAAGATTTACTGTTGGATTCTAAGATGAACAATCAACATGACTCG
TTTCCACCATAATCTACCCCTAAAGTTGTGAACGATGTCAAACTAGAGATCTTTCCCTGA
CCTCTCTCTTCACACGTCATGTAGGGGTCGTCATGCACAAGCCTCTACAGCAGCGTCAAA
CACACCCTCCTCGATCTGATCTCTCTTCCATCCTCTAATCTACTTGAGTTAACCAAATCG
TGTTCCCGTCCGGCGTGTTTTGCGTT