Contig Data
morexGenes
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Map Locations of contig_83118 (4275 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_83118

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_79046 3 1088 bp MLOC_79046.1 Available Available LOC_Os10g25030.1, FRAME:-1, EVALUE:2e-101, 13110.m02104 protein red chlorophyll catabolite reductase, putative, expressed





CDS Structure of MLOC_79046






Contig Sequence (4275 bp)

>contig_83118 4275 assembly3_WGSMorex_rbca.fasta
ATAAATGCCACCACTCATATCCACCTTACACAAGGAAATGGAATTGATAATGTAATTGAA
AAGATTCGAAGAATGACCCAACTTAACTTTCTTATTCTTCTCATCAGTGAATCTAAGAAT
ATTAAAGTCTCCTCCTACAATATAAGGGCAGGCTATACCTCCACACATTGCAGCAAGCTC
CGTGAGAAATTCAGTCTTAAATTCTTCGTGTGCTGATCCATGAACCACCAGAATACAACA
ATACAGTTTCAAATTTTTGTCCCACAACTCAAGTTTCATAATTTACCAAATCAAAGGTAT
TATTCCTATATCCACATAAGACACCTCCCGATTTCCCTTCCGAAGGAATCCACTTCCAAC
AGAAAGCATCCCCGGGATCAAATTTCCTCAAGAACTTAGAGGAAAAGTCCTTCTTCATAG
TTTCCTGGATCCCAACAAAATCAAGTTTATACTCTCTAATCAAATCAGACAGATATGTCA
CCATGCCTCTCTTCCCAACCCCCCTACAATTCCAAAAAAGGCTAATCATTTTTTCTTATT
TTTTGGAGATTGAGCTTTGTTGTCAGGTTTACCAGGAGCCACAGTTTTACGTGCAACTCC
ACTCAACTTTTGATTTTGACTTCTAGTCACAGGTTTAGAGATTATTACATTCACTTTCCT
TTTTTTTCTGGATCTAACAACAGTAAAATCATTCTCATCCAAGTCCCCCTCCCCCACCAA
GGCTGTGTTCAAGGGACATGATTCTCCAGCAGCATTGGTGATAAACAACATCTTATCTTG
ATGCTCATCATTTTCATCAACCTTTTTAGCAATATTAGCTCTAGATATCTCAAGTTCTCT
AATTATATCTATAGAGGCAAAGTTATCATCAGGAATGTTGACACCCATTTGAGCACCAGT
GGAAACAATCTCTAGATTTGATAAAACTTCAAAATAGTTACCAGGAGACATTTCCTTACC
TTATAGATTTCTTTTCTTAGTCATCTTCTCAGCCCTGATGCCCGCATGCTCCACATTGGC
CCATGCAGTACTTTTGCTAAACCTTGCTTGCATTTCCTCCACAGCAGGTGGCATAGGAAT
CACCTCAACATTCTCATCAGGGTTACCAGGAGATTGCACTGAGTAAGACTGCACTTTTTG
CTGGCAAGAGGAGTCACTAGGGTCCATCTCAGTCACCACAGGTTCCCCCACACATGCCTC
CAAGTAAGATGAGAATATCTTGCCAGAAACAGAACTAGGGACAATTTGCATTGAATTCAC
CACAATTCTATCATAGGAAACCTTATGAGTGTCCATATATTCCACCCCCCTCTAGGTTGA
TTTTTTTTCCGCTTCCTCAGCCATGGTATCAATGAGCAGCTCATTACCCACTTCCTCACT
CTCATCCTCAGATTGAACCTCATCACTATCATTTTGAGTTTTTTCTTCCTCCATCACTTC
CTCTAATGGAGCCATATTCATATTCTTCCCAAATCCTCCCCCAGCCATCCCCGGAGGAGC
CGAAGACTCCCCCATAGTAGATGAGGAGGCAATATGTCCTTCTGCACGCTTATCATTATT
GAAACTAGCTCTTTTAGGTGAATTACCTCCATCAGTTTCTTGCTGCACAAAAACTTTTTC
GTGAGGTGGATTTTTTACAAGAATCTTATCAACAAAAAAGAAGAAATCATAGAAATGTCC
TCCCAGTACCCCCTCTGCAGAAGCAGGGATATCCTCTGCATCTCTGCATCCCAGCTTGAT
CCTCACAGATTCAGGCCTATTAATAGTTGCCTTGTCAATCTCCAGCGTAACCCCAACCAG
AGACCCCACATATGCAATATTCTTCTCATGTCTTTTATCTAGAGGTATGTTACTAACATT
GACCCAAGCCACATTAAGAACACCCTTGGCACCCACAGATTCATACCACTTTCTCAAGTT
AATCACAACACCACAACTTTTCACATTCATGCTCTCAGCAAAGCATGCTTTGTCCACATC
TCTAGGAGAAGGGAACCTCATCATAAAGGCGTTAGGCCCAATAGATCTAGCCGATCATCT
CTAGTTAGTATTAATGTAAGCATTAAAAAACTCCTCAAGCTGCCTCCCAGATGCATGTCC
TTCTACTACTGATATCACAGTGAATCTATTCCTATCAGTATTCTGGCTAGGGGTACGATG
ATCATGAATATAGAAGAACCCCTTTCCCACAGCATGAAATCCACACATTGGGGCCACGCA
ATCCCAAGGGAGCACATTATTGCAAATCGGAACCAGGTGGCCATGGTTCCTACATCTACC
GCATATAGCACGAGGACAACATACTGGCAAATGCCCAGGTTCCTTGCAAGTGATGCAAAC
CTCAGCGCCTCCCACTAGTGGGGAAGCGTTACTCTTGCCGGGAGTAGGATGACGACGATC
TGGAGCTTGATGAAGAGGTTGTTGCTGACGCGGATCTTGTTGACGTCCTCCCGCAGCACC
TCCAGCGACAATTTGGTTGCTGTGGTCGCCCCACTTTTCCGATCCACGGCCTCCACCTTG
CGTCTCCATGGCCGTCGCATCCCATCTCGCCTTGTCGGATCCCCCTTGTCGCGGATCTAC
GTTGGAGGAGACTTGTCCGCCGTCGTCGATGTCGCGCGTCCACACCATGTTACGGCCGCC
TCCGCCACGGTCACGCCCTCCGCCGCGACCGAAACGGCCACCACCACCACCGTCCCCGCG
GAATCCGCGGTTGCCCATCTCCCGCCCCGCCATGGGTAGAGTCCGCGGTGACGAGGCCAC
AACCTCCGCGAAGGACCTGCTACCCCCTCGTGCCTTCCCCTCCCACCAACCAAAGGAAGA
AGAAACCCTAGATGGCGAAACCCTAGCTTTCTCGCAGAAGTGGCAAAAGAGAGCGGCGAG
ATCTGGAATGGGAGAGGCAGTGGGTGCGGGCGAGGATAACCCTGAAACCCTAGACGCATC
CCCTGTAGCGCGTGGGCCTTCGTGGACCGGGGCGGAGGCATCCCCCTGCCCAGCATGCGA
CCCGGGCCTAGGCCCGAGAATGCCTGGCTCGGTTGTACCTTGCGGTACACGGCAACGTAG
CGACACGTGAACGCTCCCACGGTCACCTCCTTCCGCGGGCCGGCTCGTGAGGTCGCTGGC
GGCGAGGCTCTGCGCCGGGGAGTCGCGTGCGGCGAGGGAGAGGAGAAAACGATGAAGATA
CCGAATCGTGTTGCCAAATCATCATCACAGCATTCAGTTCAGCGAGTCTGACAAGATGTA
CTGCAAATTAGAAACGTTTTCCACCAAATAATTATTTACATTCCCATTGGTTTGTAATCT
AAAGTCACATTTGTACTTCTGAATCCTAGGCCTCTTGTACCCCAAAGGCCTTACGAATTT
CAGCGATGATGCGTCCGGACACGTCGGGGCCAAACATCCTCGGCAAATTCGCGGTCAGGT
CAACCTCAATCGATTTTGATCTTACAGTTCGGTCCCTCTTGACCATGATCTCTCGCTCGC
CCTCTTCCATTTCTGAGGCGTCACTGGCGCAAGTATCAAGCCAGATCTGAAGAATCCCCT
TCACAACTGACGCAAGATGACCATGCACAATCTCTTCCAAGGTGCCCTCCCCTCCTTTCC
CACAGTCAATGGTGAAGAACACCGCCGTCGGAGAAAATGCGCTGCGCACGAAGAGAGACG
GCGAAAGGTACGGGCGGGCTTGCGGCAATTGTTCGATGATTTTGCGCTGCTTGTCCACCT
CGGTATCTTCATAGTACTTCTCGATGTACTCTGGATGGAGCGCGAGGTCTTTCCTTGGGA
GCAGGTCCAGAAGCACGACCATTGATGTTGGGCTGCCTTGGATGAACTCCATGATGAAAT
GTGGTGCATCCGTCGAGGCATTTAGGTTGATGAAAAGAGACGTGATGTCGATTGCACCAT
TTGGGACTTTGCAGTGAAGCGACGACTGCAGCATGAAATCAATCTGTAGACAACAAAGAG
CACTTGAACTGTCATTGGTGTTCCCTGCTGCCTGTTATATGGTCACGAGGAGCAAGTAAA
ACGAAGCAAGTTTTTTGTAGGTGAGCCTGTTTTCATGATTCCACTGCTACTGTTCTTTCT
GGCGACTGTGTTAACGGTTTCAGATGGAGCTGCCAGTCAAAATCGGATAAGATACACGAT
CGCAGGGACGGGAGGAGGTACCGAGGAGTCGGGCGCGCCGCGGCGCACGTCCAGGGAGCC
GAGGGCGGTCCCGTCGCCGTTGCGGAACTCGGCGACGTCGGCGGGCACGGCCGATGGCAG
CAGCCGGGCGCCCAG