Contig Data
morexGenes
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Map Locations of contig_8280 (3472 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_8280

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_78976 1 240 bp MLOC_78976.1 Available Available None
MLOC_78975 4 1191 bp MLOC_78975.2 Available Available LOC_Os05g01490.1, FRAME:+2, EVALUE:5e-25, 13105.m00083 protein ras-related protein, putative





CDS Structure of MLOC_78976






CDS Structure of MLOC_78975






Contig Sequence (3472 bp)

>contig_8280 3472 assembly3_WGSMorex_rbca.fasta
AATGTGGCCATAAGATTGATAATTTAACTTGAAAGCCATAAATCTTCACACACGATAGCC
CATTTCTCATAACACTTTTTTTAAAATAATCATTGTATTACAAGTTTATTATTTTTCCTC
ATAACTTGGTCACATATTATAACACAACGCGAAGGTTTTGCATTTTTTGTTTTTTTTTAA
TTTGTTATACCCGTTTCAAAATGCGGTTGAAACGGCGGGTGTGACCGTTCATACCTAATA
GTTGAATCTTGGAAAACTTTGTATGTTTCTCTGATTAAATAGATACTTGTGTGCCTAAAA
ATCATTTTTGGTAAAAATAAAGAGCAAACTATGAGGCAGTTGTAGTTCAAATTTGACCCG
CTTCCAGCTGATTCGACGAAAATTTGTCTTTTCACGAGAGGTGGATAAAAGCTTTTGACA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCCTAGTATTTTAGAAAAATAATTTGG
TCCAATTTTAAAACAAATATATGATATGTCCTTCACAAAACAAAACTCATTTTGGACACT
CGAAAAATGGAAAACGATTTTTTCGTTCAAAGAAAAATGAAAACTTCTTAGGCAACATCG
TTTTCCTTTACAATATGCACCCTTGCGCACAATATGGGAACATTTGAAAAAACTATGCCA
TGGATGTGGCCATAAGATTGGTTATTTGCTTGAAAACCATGAATCTTCAAACATGATAGC
TCATTCTGAGAATACTTTTTTTAAAATAATTACAGTATTACAAGTTTATTATTTTTCTTG
GTAACTTGGTCACATATGATGAAACAACGCAAAGATTTTGCATTTTTTTGTTTTTGTTTG
AATTTGTTATGTCTGTTTCAAAATGCGGTCGAAACGGCTAGCATGACCGTTCGTATCTAG
GGGTTGAATCTTGCTAAATTTTTGTTGGATCTCTGATTAAATAGNNNNNNNTTTACCTAA
AAATGATTTTTGGAAGAAATCATGAGAAAACTATGAGGTACCTCTAGTTCAAATTTGACC
CGCTTTCTGCTGAATCGACGGTAATTTGTCTTTTTTACGAGAGGTGGATAAAAGTTTTTG
ACACCCAACCATTTGGTCAATTGTATATTAAATATGCACTAGTATTTTAGAAAATTGATG
GAATCCAATTTTGCAGCAAATATTTGATAGATTCTTCACAAAAAAACCATTTTTGTCACT
TGAAAAATGGTTAAAAATATCTACAAAGATCGGAAATGCATACAAATCGGTCCTCGTCCA
TAAAATGTGGTCTACTGTAGTGAAAATTCGTGTGGTGCCCTTTTAAAAAATATTTTTAAT
AGATGCTTCACACTTTAGATGATCATAACGTCATTAAAGCTTACACTTTGTTCTGATTGG
TCTATGAGCATATCACGCGGATCAAGCATCAGAGACCGTCGGATACTGAAGATCTAACGG
CCTACAACCCTCACCCCCACCCGGAAGTAGCTCCCCTAGCGTACACCACATGCCGTTGAG
AGCACTGACATGTGGGCCTAATTCCTCGTGGGCCCACCTGTCACTGAACGAATGCCACCC
TCTCCCTGCACACCTCTCACCCACCGCGAGCTCCTGTCCCCCTCTCCCCCGCACACCACT
CCTCTCCCCACAACCCGCAACACAAACCCTAACCCTCCCATCTGACCCATGTACCCTCTC
CCCAATTGGGCCGCCGCCGCCCATCTACGGCGGCTAATCCCACCTCCTCGCCTTCATTGA
TGACCACCTGCTCCCACGCGCCAGCTCCTTCCCCTCATCGCCTCGCTCCTCGCCTTCCCC
GCCGACCACCCGCTCCGCGACCACCTCGTCGCCACCGCCGCCTCTGGCCTCGCCTTCGTG
TTCTCCGTGCCGGTCTCCGACCACCTACAAGGTAGAGTCGTACCTCTCCCTATCTCCCAT
GGTGTCAGATCAAGCCGACGAGGTCAGCCCGCGGCCAGATCCGCCATGGCCACATCGGGC
CTGCCGGATCCGTGTCGTCGTCGAGCTGGATCCTCCTCGGAGGCCATGCGAGGACGATGG
TCGTTGACGACGGCGTCGGCAGGTGCGTCGAGGTCCCTCCTCCATCTTCATCCCCCTCCC
CTCCCCTCCACCGATCTGCACACCCCATCCACCGTCCTCGGATCCCCTCCAGCAGCCCTC
CCCCTCTTTCAACTCTGAATCCGCCGGAGCCCAGCCGACGCCCGCCATGAGCACCTCCGA
GTAGTAAGTCCCCGCCGCCGATCTTTCTTTATTTCTTGCTTGAGTTTTCTATTTCTCTTT
GGTCCCGGTGGGTAATTCATCTGACGCGCGTGGGCTGCTTGCTGCAGCGACTACCTCTTG
AAGCTGCTCCTCATCGGCGACTCCTCCATCGGCAAGTCGTGCCTCCTCCTCCGCTTCGCC
GTGAGAAACCCCGACCCTCTTCCGATTGGGAATACCTTGCATCTCTCTTTTTCCCCTCTT
GTATAAGGTTTGGTTGATCCCTTTTGCAGGACAATTCGTACGGCGGCAACTACATCAACA
CCACCGGCGTTGATTTCGTAAGTACAGTAACAGTACAGATGATCCCTTTTTTGCTGCGGT
TGATTGATGGAGCTCCATTAAGCAGCTGCTGCCTGCAAGTACTACAGGGCTTCTGACTGA
ATCTTCTCAACTCTTTTTCATGGCAGAAAATCCGGACCGTCGAGCTCGACGGCAAGTCGG
TGAAGCTGCAGATTGTGAGTTCCAGTTCACAGGAACTTTGCTAGTGCCAGTTCATTCGTA
GTTATATGTGTGCATGGTCTAGAAATGTTCCCGTTATTAGCTCGAGAACATGTGATGCCG
GCCATATTGTAGGTTCTAAATATGTGTGAGTCTGACAGTGTATGTGTGTGTGGGTCTGGT
TCTACATGTTTTACTTAAAAGTGAGATTTTATTTTTCTTCATCTTTTAGGGGAGAAACTT
TTGATCTGTTCAACGACTCTCAAGATAGTATAAATAACATCAGAAATAAAAATTACGTTC
ATGTGTGTAGATTTCTTTTGTTTTATCAGAATCTCTTGACAACCGTCTTGGTCTTCTTTG
GACTCGCACGGAAAGAGAGCATTAACCAATGGTGAGAGACTCTCTTTCCAGCTCAGTTCA
CTTATCTAAAGTGTAAAGCTTTCAGAAATCAGTTTGCAGTGTTGAATCAATACACATCTT
TTATCTTGAATTTTGGTAGTATGAAAAACACATTAGTAAATCTGAATAACTTTGACATAT
TTTCTCTATTATCTTGCACTGGATTGGTACCTGTGATTGCCTTGTACAAATATATCTTAA
TTCTGCTAACACCGATCCTTGTGTATGTTTATAGTTGTTAGTTCTTTGATCTGTCCACCG
AGGAAGAGGGGGCATCTTTGATCTGTCCACAACGTAAGTGCTTGGTCTGTCCCACTCTCT
TCCTTTGCTACGTGATGGTGATCTCTTTGTCTTATTTGTACACATTGGTTAA